General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000644462
Gene ID:	ENSG00000099956
Gene Name:	SMARCB1
Sequence (UNICHARACTER ENCODING)	UACCCCUCACUCUGGAGGCGACUAGCCACUGUGGAAGAGAGGAAGAAAAUAGUUGCAUCGUCACAUGAUCACGGAUACACGACUCUAGCCACCAGUGUGACCCUGUUAAAAGCCUCGGAAGUGGAAGAGAUUCUGGAUGGCAACGAUGAGAAGUACAAGGCUGUGUCCAUCAGCACAGAGCCCCCCACCUACCUCAGGGAЖCAGAAGGCCAAGAGGAЖCAGCCAGUGGGUACCCACCCUGCCCAACЖGCUCCCACCACUUAGAUGCCGUGCCAUGCUCCACAACCAUCAACAGGAACCGCAUGGGCCGAGACAAGAAGAGAACCUUCCCCCUUUGGUGUGGAUGCAUCGCUGCACUCACCCUCCGUGCUGAUUCCGCCUUAGUUCUCCAGCACGUUUCAGUUCCUUCCUCCCCAGAAAAACACUCUGCUUUGACCUUGUGCUCCCCACAACGCCACAGUACCUCCUCGCCUUUGAЖCUGUUGUGUUUCCCUGACUUCCAGGACAUUGUCCAUAGCCUCCUUGGCUCUGUCUGCUGUCACCUUGCCAUGUCCUCCUCACCUCUCUGGCCCCUCAAGUGGAGUUACUCAGGGCGCGGUCCUUGGGCCCUUUCUCUGCCCUCAGUUUCACAUGAGUGGGCCACAGCCAGUCUGAUGGUGCAGAUGCCAUCCACGUGACUCCCACUGUGCCACCAUUUCCCAGAGCCUGCUGGAGUAAACCACCACAAACUGGUGGCUUCGAGCAGAGCACAUUUCUUCCCUCACAGUUCUGGGGCCCAGGAGCCUGGAUUUAGUUUCACUAGACCAGACUCAUGUGUGGACAGGGCCAUGCUCCCUCCAGAGGCCAUCGAGGCGAUUCGGUCCUUGCUUCUUCCAGCUUUGGGGGCUGCCACGUUCCAGUCUCAGCCUCUGUGGUCACGUGGCCUUCUCUGCAUGAAACUUCCCUGUCUCUCUCUUAGAAGGACACUUGGCGAUGUAAUUUAGGGCCCUUCUGGUUAAUCUCUCAGGAUCUUUCACUUAAUCGUAUCUUCAAAGUCUCCUUUUUUGGCCAUAUGAGCUGACAGUCACAGGUUUUGGGGAUUAAGUUGUAGAUGUCUUCGGGGUCUGUUUUUUACCUCUGUGGCCCAGACUUCCUCAGCUGCCCUCACCCCCUCAGCCUCAUGCUGCCUGAAGACCUCUCCAUCUCGGCGCGUGGAGAUCCAGCCCUCUCCUUGCUCAGGCUCUUUGAUGACCAUGACCCAGCUGUGAUCCAUGAGAACGCAUCUCAGCCCGAGGUGCUGGUCCCCAPCCGGCUGGACAUGGAGAUCGAUGGGCAGAAGCUGCGAGACGCCUUCACCUGGAACAUGAAUGAGAAGUUGAUGACGCCUGAGAUGUUUUCAGAAAUCCUCUGUGACGAUCUGGAUPUGAACCCGCUGACGUUUGUGCCAGCCAUCGCCUCUGCCAUCAGЖCAGCAGAUCGAGUCCUACCCCACGGACAGCAUCCUGGAGGACCAGUCAGACCAGCGCGUCAUCAUCAAGCUGAACAPCCAUGUGGGAAACAUUUCCCUGGUGGACCAGUUUGAGUGGGACAUGUCAGAGAAGGAGAACUCACCAGAGAAGUUUGCCCUGAAGCUGUGCUCGGAGCUGGGGUUGGGCGGGGAGUUUGUCACCACCAUCGCAUACAGCAPCCGGGGACAGCUGAGCUGGCAUCAGAAGACCUACGCCUUCAGCGAGAACCCUCUGCCCACAGUGGAGAUUGCCAUCCGGAACACGGGCGAUGCGGACCAGUGGUGCCCACUGCUGGAGACUCUGACAGACGCUGAGAUGGAGAAGAAGAUCCGCGACCAGGACAGGAACACGAGGCGGAUGAGGCGUCUUGCCAACACGGCCCCGGCCUGGUAACCAGCCCAUCAGCACACGGCUCCCACGGAGCAUCUCAGAAGAUUGGGCCGCCUCUCCPCCAUCUUCUGGCAAGGACAGAGGCGAGGGGACAGCCCAGCGCCAUCCUGAGGAUCGGGUGGGGGUGGAGUGGGGGCUUCCAGGUGGCCCUUCC?GGCACACAUUCCAUUUGUUGAGCCCC
Sequence (SHORT NAMES ENCODING)	UACCCCUCACUCUGGAGGCGACUAGCCACUGUGGAAGAGAGGAAGAAAAUAGUUGCAUCGUCACAUGAUCACGGAUACACGACUCUAGCCACCAGUGUGACCCUGUUAAAAGCCUCGGAAGUGGAAGAGAUUCUGGAUGGCAACGAUGAGAAGUACAAGGCUGUGUCCAUCAGCACAGAGCCCCCCACCUACCUCAGGGAm6ACAGAAGGCCAAGAGGAm6ACAGCCAGUGGGUACCCACCCUGCCCAACm6AGCUCCCACCACUUAGAUGCCGUGCCAUGCUCCACAACCAUCAACAGGAACCGCAUGGGCCGAGACAAGAAGAGAACCUUCCCCCUUUGGUGUGGAUGCAUCGCUGCACUCACCCUCCGUGCUGAUUCCGCCUUAGUUCUCCAGCACGUUUCAGUUCCUUCCUCCCCAGAAAAACACUCUGCUUUGACCUUGUGCUCCCCACAACGCCACAGUACCUCCUCGCCUUUGAm6ACUGUUGUGUUUCCCUGACUUCCAGGACAUUGUCCAUAGCCUCCUUGGCUCUGUCUGCUGUCACCUUGCCAUGUCCUCCUCACCUCUCUGGCCCCUCAAGUGGAGUUACUCAGGGCGCGGUCCUUGGGCCCUUUCUCUGCCCUCAGUUUCACAUGAGUGGGCCACAGCCAGUCUGAUGGUGCAGAUGCCAUCCACGUGACUCCCACUGUGCCACCAUUUCCCAGAGCCUGCUGGAGUAAACCACCACAAACUGGUGGCUUCGAGCAGAGCACAUUUCUUCCCUCACAGUUCUGGGGCCCAGGAGCCUGGAUUUAGUUUCACUAGACCAGACUCAUGUGUGGACAGGGCCAUGCUCCCUCCAGAGGCCAUCGAGGCGAUUCGGUCCUUGCUUCUUCCAGCUUUGGGGGCUGCCACGUUCCAGUCUCAGCCUCUGUGGUCACGUGGCCUUCUCUGCAUGAAACUUCCCUGUCUCUCUCUUAGAAGGACACUUGGCGAUGUAAUUUAGGGCCCUUCUGGUUAAUCUCUCAGGAUCUUUCACUUAAUCGUAUCUUCAAAGUCUCCUUUUUUGGCCAUAUGAGCUGACAGUCACAGGUUUUGGGGAUUAAGUUGUAGAUGUCUUCGGGGUCUGUUUUUUACCUCUGUGGCCCAGACUUCCUCAGCUGCCCUCACCCCCUCAGCCUCAUGCUGCCUGAAGACCUCUCCAUCUCGGCGCGUGGAGAUCCAGCCCUCUCCUUGCUCAGGCUCUUUGAUGACCAUGACCCAGCUGUGAUCCAUGAGAACGCAUCUCAGCCCGAGGUGCUGGUCCCCAYCCGGCUGGACAUGGAGAUCGAUGGGCAGAAGCUGCGAGACGCCUUCACCUGGAACAUGAAUGAGAAGUUGAUGACGCCUGAGAUGUUUUCAGAAAUCCUCUGUGACGAUCUGGAUYUGAACCCGCUGACGUUUGUGCCAGCCAUCGCCUCUGCCAUCAGm6ACAGCAGAUCGAGUCCUACCCCACGGACAGCAUCCUGGAGGACCAGUCAGACCAGCGCGUCAUCAUCAAGCUGAACAYCCAUGUGGGAAACAUUUCCCUGGUGGACCAGUUUGAGUGGGACAUGUCAGAGAAGGAGAACUCACCAGAGAAGUUUGCCCUGAAGCUGUGCUCGGAGCUGGGGUUGGGCGGGGAGUUUGUCACCACCAUCGCAUACAGCAYCCGGGGACAGCUGAGCUGGCAUCAGAAGACCUACGCCUUCAGCGAGAACCCUCUGCCCACAGUGGAGAUUGCCAUCCGGAACACGGGCGAUGCGGACCAGUGGUGCCCACUGCUGGAGACUCUGACAGACGCUGAGAUGGAGAAGAAGAUCCGCGACCAGGACAGGAACACGAGGCGGAUGAGGCGUCUUGCCAACACGGCCCCGGCCUGGUAACCAGCCCAUCAGCACACGGCUCCCACGGAGCAUCUCAGAAGAUUGGGCCGCCUCUCCYCCAUCUUCUGGCAAGGACAGAGGCGAGGGGACAGCCCAGCGCCAUCCUGAGGAUCGGGUGGGGGUGGAGUGGGGGCUUCCAGGUGGCCCUUCCm5CGGCACACAUUCCAUUUGUUGAGCCCC
Sequence (MODOMICS CODE ENCODING)	UACCCCUCACUCUGGAGGCGACUAGCCACUGUGGAAGAGAGGAAGAAAAUAGUUGCAUCGUCACAUGAUCACGGAUACACGACUCUAGCCACCAGUGUGACCCUGUUAAAAGCCUCGGAAGUGGAAGAGAUUCUGGAUGGCAACGAUGAGAAGUACAAGGCUGUGUCCAUCAGCACAGAGCCCCCCACCUACCUCAGGGA2000000006ACAGAAGGCCAAGAGGA2000000006ACAGCCAGUGGGUACCCACCCUGCCCAAC2000000006AGCUCCCACCACUUAGAUGCCGUGCCAUGCUCCACAACCAUCAACAGGAACCGCAUGGGCCGAGACAAGAAGAGAACCUUCCCCCUUUGGUGUGGAUGCAUCGCUGCACUCACCCUCCGUGCUGAUUCCGCCUUAGUUCUCCAGCACGUUUCAGUUCCUUCCUCCCCAGAAAAACACUCUGCUUUGACCUUGUGCUCCCCACAACGCCACAGUACCUCCUCGCCUUUGA2000000006ACUGUUGUGUUUCCCUGACUUCCAGGACAUUGUCCAUAGCCUCCUUGGCUCUGUCUGCUGUCACCUUGCCAUGUCCUCCUCACCUCUCUGGCCCCUCAAGUGGAGUUACUCAGGGCGCGGUCCUUGGGCCCUUUCUCUGCCCUCAGUUUCACAUGAGUGGGCCACAGCCAGUCUGAUGGUGCAGAUGCCAUCCACGUGACUCCCACUGUGCCACCAUUUCCCAGAGCCUGCUGGAGUAAACCACCACAAACUGGUGGCUUCGAGCAGAGCACAUUUCUUCCCUCACAGUUCUGGGGCCCAGGAGCCUGGAUUUAGUUUCACUAGACCAGACUCAUGUGUGGACAGGGCCAUGCUCCCUCCAGAGGCCAUCGAGGCGAUUCGGUCCUUGCUUCUUCCAGCUUUGGGGGCUGCCACGUUCCAGUCUCAGCCUCUGUGGUCACGUGGCCUUCUCUGCAUGAAACUUCCCUGUCUCUCUCUUAGAAGGACACUUGGCGAUGUAAUUUAGGGCCCUUCUGGUUAAUCUCUCAGGAUCUUUCACUUAAUCGUAUCUUCAAAGUCUCCUUUUUUGGCCAUAUGAGCUGACAGUCACAGGUUUUGGGGAUUAAGUUGUAGAUGUCUUCGGGGUCUGUUUUUUACCUCUGUGGCCCAGACUUCCUCAGCUGCCCUCACCCCCUCAGCCUCAUGCUGCCUGAAGACCUCUCCAUCUCGGCGCGUGGAGAUCCAGCCCUCUCCUUGCUCAGGCUCUUUGAUGACCAUGACCCAGCUGUGAUCCAUGAGAACGCAUCUCAGCCCGAGGUGCUGGUCCCCA2000000009UCCGGCUGGACAUGGAGAUCGAUGGGCAGAAGCUGCGAGACGCCUUCACCUGGAACAUGAAUGAGAAGUUGAUGACGCCUGAGAUGUUUUCAGAAAUCCUCUGUGACGAUCUGGAU2000000009UUGAACCCGCUGACGUUUGUGCCAGCCAUCGCCUCUGCCAUCAG2000000006ACAGCAGAUCGAGUCCUACCCCACGGACAGCAUCCUGGAGGACCAGUCAGACCAGCGCGUCAUCAUCAAGCUGAACA2000000009UCCAUGUGGGAAACAUUUCCCUGGUGGACCAGUUUGAGUGGGACAUGUCAGAGAAGGAGAACUCACCAGAGAAGUUUGCCCUGAAGCUGUGCUCGGAGCUGGGGUUGGGCGGGGAGUUUGUCACCACCAUCGCAUACAGCA2000000009UCCGGGGACAGCUGAGCUGGCAUCAGAAGACCUACGCCUUCAGCGAGAACCCUCUGCCCACAGUGGAGAUUGCCAUCCGGAACACGGGCGAUGCGGACCAGUGGUGCCCACUGCUGGAGACUCUGACAGACGCUGAGAUGGAGAAGAAGAUCCGCGACCAGGACAGGAACACGAGGCGGAUGAGGCGUCUUGCCAACACGGCCCCGGCCUGGUAACCAGCCCAUCAGCACACGGCUCCCACGGAGCAUCUCAGAAGAUUGGGCCGCCUCUCC2000000009UCCAUCUUCUGGCAAGGACAGAGGCGAGGGGACAGCCCAGCGCCAUCCUGAGGAUCGGGUGGGGGUGGAGUGGGGGCUUCCAGGUGGCCCUUCC2000000005CGGCACACAUUCCAUUUGUUGAGCCCC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	201	218	247	476	1284	1400	1444	1521	1662	1934	2028
Modification Positions	m6A	m6A	m6A	m6A	Y	Y	m6A	Y	Y	Y	m5C
Genomic Coordinates	22:23800947:+	22:23800964:+	22:23800993:+	22:23801222:+	22:23803360:+	22:23816823:+	22:23816867:+	22:23825232:+	22:23825373:+	22:23834238:+	22:23834332:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	gBgcfFQ5WN9C msuJfBpJvM5H VyCX26p5UBRL	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4RW3xrzJ5VQa Er3yHVFp6tX8 JBTYPMm6qNsy KyXZuxKVckYS 4Hod8ruppnD2 5tjPWDS39J3i 9De2LACts9mj BnpqjwVeTStU bvmqLAbo2zqf mNhhJTdKpjtR