General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000425375
Gene ID:	ENSG00000100284
Gene Name:	TOM1
Sequence (UNICHARACTER ENCODING)	UUCGCGGUGCCACCGCCCCGCCCACGCCUCCUCGCCGGCCUCCGAGUGCGUCACGUGACGGGUCGGUGGCGCUGGCGGUUGCUGUCAGCUGAUUCCCGGGGUUGGUGGCAGCGGCGGUAGCAGCAAUGGACUUUCUCCUGGGGAACCCGUUCAGCUCUCCAGUGGGACAGCGCAUCGAGAAAGCCACAGAUGGCUCCCUGCAGAGCGAGGACUGGGCCCUCAACAUGGAGAUCUGCGACAUCAUCAACGAGACGGAGGAAGGUCCCAAAGAUGCCCUCCGAGCAGUAAAGAAGAGAAUCGUGGGGAAUAAGAACUUCCACGAGGUGAUGCUGGCUCUCACAGUCUUAGAAACCUGUGUCAAGAACUGCGGGCACCGCUUCCACGUGCUGGUGGCCAGCCAGGACUUCGUGGAGAGUGUGCUGGUGAGGACCAUCCUGCCCAAGAACAACCCACCCACCAUCGUGCAUGACAAAGUGCUCAACCUCAUCCAGЖCCGUGUUCAACUCAGAGACACAAUCAGGACAGGAUUCUGUGGGCACUGACUCCAGCCAGCAAGAGGACUCUGGCCAGCAUGCUGCCCCUCUGCCCGCCCCGCCCAUACUCUCCGGUGACACGCCCAUAGCACCAACCCCGGAACAGAUUGGGAAGCUGCGCAGUGAGCUGGAGAUGGUGAGUGGGAACGUGAGGGUGAUGUCGGAGAUGCUGACGGAGCUGGUGCCCACCCAGGCCGAGCCCGCAGACCUGGAGCUGCUGCAGGAGCUCAACCGCACGUGCCGAGCCAUGCAGCAGCGGGUCCUGGAGCUCAPCCCUCAGAUCGCCAAUGAGCAGCUGACAGAGGAGCUGCUCAUCGUCAAUGACAAUCUCAACAAUGUGUUCCUGCGCCAUGAACGGUUUGAACGGUUCCGAACAGGCCAGACCACCAAGGCCCCAAGUGAGGCCGAGCCGGCAGCUGACCUGAUCGACAUGGGCCCUGACCCAGCAGCCACCGGCAACCUCUCAUCCCAGCUGGCAGGAAUGAACCUGGGCUCCAGCAGUGUGAGAGCUGGCCUGCAGUCUCUGGAGGCCUCUGGUCGACUGGAAGAUGAGUUUGACAUGUUUGCGCUGACACGGGGCAGCUCACUGGCUGACCAACGGAAAGAGGUAAAAUACGAAGCCCCCCAAGCAACAGACGGCCUGGCUGGAGCCCUGGACGCCCGGCAGCAGAGCACUGGCGCGAUCCCAGUCACCCAGGCCUGCCUCAUGGAGGACAUCGAGCAGUGGCUGUCCACUGACGUGGGUAAUGAUGCGGAAGAGCCUAAGGGGGUCACCAGCGAAGAAUUUGACAAAUUCCUGGAAGAACGGGCCAAAGCCGCGGACCGAUUGCCCAACCUCUCCAGCCCCUCAGCUGAGGGGCCCCCGGGUCCCCCAUCUGGCCCAGCGCCCCGGAAGAAGACCCAGGAGAAAGAUGAUGACAUGCUGUUUGCCUUAUGAGUGUGGGGUCUGGCACCCUGCAGCCCAGGUCCCCACUGCUCUCACACCCUUAGGCUGGGACCUCCCUCCCUCCUCUGGUGUUAAGGCUGCUUUGGGGGUGGCUUGUUACCCCCUUUUCCUCCUCUUUGAAGACGGAGCUGCCCCAGCUGUGGCUGGGGGUGUGGAGGCAGUGGGAUGAЖCUGGGGGACAGGUCUGCGCUGCAGUGGGAUCUGGCUGCUCUGCCUCCUUUCCCACCCCAGCUGACCAUGAGЖCUUUGCUGAGAAGUGGAGGCCCCAGGЖCAGGCUGGCUGGCUGGCUGGCUGCUUGЖCCBAGUGUGЖCUCUCCUUCACUGAGUGAUACCCUGCUCCGGGCCCAUGCCCCAAGGAGCCCUUCAGAGCCCACACUGCCAGUCGAGGCCUGGCUGGAGGCUGGCCACAGUGGAAAUUCUGCCGAGCCUCUUGUCCCUUCCCUGCUCUGCUGCAUGGGGCCCCAUGGCUUUGGCUGGCCACUGAGGGUAGGGUGUGGAGGUGUGGAGGCCCCCUGAGGAGCUGCGGCGGCCCAGGUACGAAGCUGCAACUCUGCGCGCAGUGGGCGAGAUCUCAUCAGCCCCAGGCUGCAGGUGAGGCUUCAGGGGAUGCUGGGGCCCCACUGCCCCUCCGCUGCCUUGCCCUCCAPCCUUCCUCUGUUCCUUCUGGCCGGGCACCACAGCACUGGGGCUCACCUCUUGGUUGAUCCUCUUGUACUGGGAGAGGUGCCUUUUGUAUCCCCAAUUAAAGGUAGAAAACCACCCUGCUAGCAGCAUUGUC
Sequence (SHORT NAMES ENCODING)	UUCGCGGUGCCACCGCCCCGCCCACGCCUCCUCGCCGGCCUCCGAGUGCGUCACGUGACGGGUCGGUGGCGCUGGCGGUUGCUGUCAGCUGAUUCCCGGGGUUGGUGGCAGCGGCGGUAGCAGCAAUGGACUUUCUCCUGGGGAACCCGUUCAGCUCUCCAGUGGGACAGCGCAUCGAGAAAGCCACAGAUGGCUCCCUGCAGAGCGAGGACUGGGCCCUCAACAUGGAGAUCUGCGACAUCAUCAACGAGACGGAGGAAGGUCCCAAAGAUGCCCUCCGAGCAGUAAAGAAGAGAAUCGUGGGGAAUAAGAACUUCCACGAGGUGAUGCUGGCUCUCACAGUCUUAGAAACCUGUGUCAAGAACUGCGGGCACCGCUUCCACGUGCUGGUGGCCAGCCAGGACUUCGUGGAGAGUGUGCUGGUGAGGACCAUCCUGCCCAAGAACAACCCACCCACCAUCGUGCAUGACAAAGUGCUCAACCUCAUCCAGm6ACCGUGUUCAACUCAGAGACACAAUCAGGACAGGAUUCUGUGGGCACUGACUCCAGCCAGCAAGAGGACUCUGGCCAGCAUGCUGCCCCUCUGCCCGCCCCGCCCAUACUCUCCGGUGACACGCCCAUAGCACCAACCCCGGAACAGAUUGGGAAGCUGCGCAGUGAGCUGGAGAUGGUGAGUGGGAACGUGAGGGUGAUGUCGGAGAUGCUGACGGAGCUGGUGCCCACCCAGGCCGAGCCCGCAGACCUGGAGCUGCUGCAGGAGCUCAACCGCACGUGCCGAGCCAUGCAGCAGCGGGUCCUGGAGCUCAYCCCUCAGAUCGCCAAUGAGCAGCUGACAGAGGAGCUGCUCAUCGUCAAUGACAAUCUCAACAAUGUGUUCCUGCGCCAUGAACGGUUUGAACGGUUCCGAACAGGCCAGACCACCAAGGCCCCAAGUGAGGCCGAGCCGGCAGCUGACCUGAUCGACAUGGGCCCUGACCCAGCAGCCACCGGCAACCUCUCAUCCCAGCUGGCAGGAAUGAACCUGGGCUCCAGCAGUGUGAGAGCUGGCCUGCAGUCUCUGGAGGCCUCUGGUCGACUGGAAGAUGAGUUUGACAUGUUUGCGCUGACACGGGGCAGCUCACUGGCUGACCAACGGAAAGAGGUAAAAUACGAAGCCCCCCAAGCAACAGACGGCCUGGCUGGAGCCCUGGACGCCCGGCAGCAGAGCACUGGCGCGAUCCCAGUCACCCAGGCCUGCCUCAUGGAGGACAUCGAGCAGUGGCUGUCCACUGACGUGGGUAAUGAUGCGGAAGAGCCUAAGGGGGUCACCAGCGAAGAAUUUGACAAAUUCCUGGAAGAACGGGCCAAAGCCGCGGACCGAUUGCCCAACCUCUCCAGCCCCUCAGCUGAGGGGCCCCCGGGUCCCCCAUCUGGCCCAGCGCCCCGGAAGAAGACCCAGGAGAAAGAUGAUGACAUGCUGUUUGCCUUAUGAGUGUGGGGUCUGGCACCCUGCAGCCCAGGUCCCCACUGCUCUCACACCCUUAGGCUGGGACCUCCCUCCCUCCUCUGGUGUUAAGGCUGCUUUGGGGGUGGCUUGUUACCCCCUUUUCCUCCUCUUUGAAGACGGAGCUGCCCCAGCUGUGGCUGGGGGUGUGGAGGCAGUGGGAUGAm6ACUGGGGGACAGGUCUGCGCUGCAGUGGGAUCUGGCUGCUCUGCCUCCUUUCCCACCCCAGCUGACCAUGAGm6ACUUUGCUGAGAAGUGGAGGCCCCAGGm6ACAGGCUGGCUGGCUGGCUGGCUGCUUGm6ACCCmAGUGUGm6ACUCUCCUUCACUGAGUGAUACCCUGCUCCGGGCCCAUGCCCCAAGGAGCCCUUCAGAGCCCACACUGCCAGUCGAGGCCUGGCUGGAGGCUGGCCACAGUGGAAAUUCUGCCGAGCCUCUUGUCCCUUCCCUGCUCUGCUGCAUGGGGCCCCAUGGCUUUGGCUGGCCACUGAGGGUAGGGUGUGGAGGUGUGGAGGCCCCCUGAGGAGCUGCGGCGGCCCAGGUACGAAGCUGCAACUCUGCGCGCAGUGGGCGAGAUCUCAUCAGCCCCAGGCUGCAGGUGAGGCUUCAGGGGAUGCUGGGGCCCCACUGCCCCUCCGCUGCCUUGCCCUCCAYCCUUCCUCUGUUCCUUCUGGCCGGGCACCACAGCACUGGGGCUCACCUCUUGGUUGAUCCUCUUGUACUGGGAGAGGUGCCUUUUGUAUCCCCAAUUAAAGGUAGAAAACCACCCUGCUAGCAGCAUUGUC
Sequence (MODOMICS CODE ENCODING)	UUCGCGGUGCCACCGCCCCGCCCACGCCUCCUCGCCGGCCUCCGAGUGCGUCACGUGACGGGUCGGUGGCGCUGGCGGUUGCUGUCAGCUGAUUCCCGGGGUUGGUGGCAGCGGCGGUAGCAGCAAUGGACUUUCUCCUGGGGAACCCGUUCAGCUCUCCAGUGGGACAGCGCAUCGAGAAAGCCACAGAUGGCUCCCUGCAGAGCGAGGACUGGGCCCUCAACAUGGAGAUCUGCGACAUCAUCAACGAGACGGAGGAAGGUCCCAAAGAUGCCCUCCGAGCAGUAAAGAAGAGAAUCGUGGGGAAUAAGAACUUCCACGAGGUGAUGCUGGCUCUCACAGUCUUAGAAACCUGUGUCAAGAACUGCGGGCACCGCUUCCACGUGCUGGUGGCCAGCCAGGACUUCGUGGAGAGUGUGCUGGUGAGGACCAUCCUGCCCAAGAACAACCCACCCACCAUCGUGCAUGACAAAGUGCUCAACCUCAUCCAG2000000006ACCGUGUUCAACUCAGAGACACAAUCAGGACAGGAUUCUGUGGGCACUGACUCCAGCCAGCAAGAGGACUCUGGCCAGCAUGCUGCCCCUCUGCCCGCCCCGCCCAUACUCUCCGGUGACACGCCCAUAGCACCAACCCCGGAACAGAUUGGGAAGCUGCGCAGUGAGCUGGAGAUGGUGAGUGGGAACGUGAGGGUGAUGUCGGAGAUGCUGACGGAGCUGGUGCCCACCCAGGCCGAGCCCGCAGACCUGGAGCUGCUGCAGGAGCUCAACCGCACGUGCCGAGCCAUGCAGCAGCGGGUCCUGGAGCUCA2000000009UCCCUCAGAUCGCCAAUGAGCAGCUGACAGAGGAGCUGCUCAUCGUCAAUGACAAUCUCAACAAUGUGUUCCUGCGCCAUGAACGGUUUGAACGGUUCCGAACAGGCCAGACCACCAAGGCCCCAAGUGAGGCCGAGCCGGCAGCUGACCUGAUCGACAUGGGCCCUGACCCAGCAGCCACCGGCAACCUCUCAUCCCAGCUGGCAGGAAUGAACCUGGGCUCCAGCAGUGUGAGAGCUGGCCUGCAGUCUCUGGAGGCCUCUGGUCGACUGGAAGAUGAGUUUGACAUGUUUGCGCUGACACGGGGCAGCUCACUGGCUGACCAACGGAAAGAGGUAAAAUACGAAGCCCCCCAAGCAACAGACGGCCUGGCUGGAGCCCUGGACGCCCGGCAGCAGAGCACUGGCGCGAUCCCAGUCACCCAGGCCUGCCUCAUGGAGGACAUCGAGCAGUGGCUGUCCACUGACGUGGGUAAUGAUGCGGAAGAGCCUAAGGGGGUCACCAGCGAAGAAUUUGACAAAUUCCUGGAAGAACGGGCCAAAGCCGCGGACCGAUUGCCCAACCUCUCCAGCCCCUCAGCUGAGGGGCCCCCGGGUCCCCCAUCUGGCCCAGCGCCCCGGAAGAAGACCCAGGAGAAAGAUGAUGACAUGCUGUUUGCCUUAUGAGUGUGGGGUCUGGCACCCUGCAGCCCAGGUCCCCACUGCUCUCACACCCUUAGGCUGGGACCUCCCUCCCUCCUCUGGUGUUAAGGCUGCUUUGGGGGUGGCUUGUUACCCCCUUUUCCUCCUCUUUGAAGACGGAGCUGCCCCAGCUGUGGCUGGGGGUGUGGAGGCAGUGGGAUGA2000000006ACUGGGGGACAGGUCUGCGCUGCAGUGGGAUCUGGCUGCUCUGCCUCCUUUCCCACCCCAGCUGACCAUGAG2000000006ACUUUGCUGAGAAGUGGAGGCCCCAGG2000000006ACAGGCUGGCUGGCUGGCUGGCUGCUUG2000000006ACC2000000090CAGUGUG2000000006ACUCUCCUUCACUGAGUGAUACCCUGCUCCGGGCCCAUGCCCCAAGGAGCCCUUCAGAGCCCACACUGCCAGUCGAGGCCUGGCUGGAGGCUGGCCACAGUGGAAAUUCUGCCGAGCCUCUUGUCCCUUCCCUGCUCUGCUGCAUGGGGCCCCAUGGCUUUGGCUGGCCACUGAGGGUAGGGUGUGGAGGUGUGGAGGCCCCCUGAGGAGCUGCGGCGGCCCAGGUACGAAGCUGCAACUCUGCGCGCAGUGGGCGAGAUCUCAUCAGCCCCAGGCUGCAGGUGAGGCUUCAGGGGAUGCUGGGGCCCCACUGCCCCUCCGCUGCCUUGCCCUCCA2000000009UCCUUCCUCUGUUCCUUCUGGCCGGGCACCACAGCACUGGGGCUCACCUCUUGGUUGAUCCUCUUGUACUGGGAGAGGUGCCUUUUGUAUCCCCAAUUAAAGGUAGAAAACCACCCUGCUAGCAGCAUUGUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	492	805	1648	1720	1747	1775	1778	1785	2121
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	Cm	m6A	Y
Genomic Coordinates	22:35323768:+	22:35330396:+	22:35347388:+	22:35347460:+	22:35347487:+	22:35347515:+	22:35347518:+	22:35347525:+	22:35347861:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	WiQcrNTGZHPT Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC WiQcrNTGZHPT UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8