General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000267838
Gene ID:	ENSG00000140280
Gene Name:	LYSMD2
Sequence (UNICHARACTER ENCODING)	AAGCUCCCCGACCCGGCGGCCUCGGCAGGACCCAUGGCGGAUUCCUCGCCCGCACUGUCCCUGCGGGAAGGCGGCCCCCGCGCGCCGCGGCCCUCGGCCCCCUCGCCGCCGCCGCGCUCGCGCUCCGGCUCCGAGUCCGAGGAGGCCGAGCUGUCGCUGAGCCUGGCCCGCACCAAGЖCCCGCUCGUACGGCAGCACCGCCAGCGUGCGGGCGCCGCUGGGCGCCGGCGUCAUCGAGCGCCAUGUGGAGCACCGGGUCCGCGCGGGCGACACGCUGCAGGGCAUCGCGCUCAAGUACGGUGUCACGAUGGAACAGAUUAAAAGGGCCAAUAAЖCUGUUUACCAAUGAUUGUAUAUUUCUGAAGAAAACUUUGAACAUCCCAGUUAUAUCAGAGAAGCCUUUGUUGUUUAAUGGЖCUUAЖCUCCAUUGAUUCUCCAGAAAAUGAAACUGCUGAUAACAGUUUUUCUCAGGAAGAGGAGCCAGUGGUGGCCGGGGAAGACCUCCCUCCUCCCAGUCCUCAAGAAUCUGAUGUUCAGCCUGUGCAGCCUGAGGAAGUGUCAGCCAGAGAUUUCCUGCAGAGACUUGACUUGCAGAUUAAGUUAUCAACACAGGCAGCCAAGAAGCUAAAAGAAGAGAGCAGAGAUGAAGAAAGUCCCUAUGCAACUUCCCUCUAUCACAGUUAGGUGAUUUGGGGGCAUAЖCUCUAACCAAAAUUAAGAUAUGUUUGGACCAUAAAGAAUCCAACAACUGAAGAUUCAAAAACAPCCCUUCUGGAUUCCUAUAGUGUCCAUCUUAAAAUCAUAЖCUAGGUAGUUCUACCUGCUGCAGUUGCACUGAAGUGAUUAGUUCCCUCUGGCUUUCUAUAAUUUUAAGUCUPUAUUAUGGCAUGAUGGCAAGGUUGUAGCCUAAAGCUCAUCACUUUUGUAGGUGGUGUUAGUUUUUAGACUAGCUUUUAUAAAUACUAAUUGACAUAAAGCAUCAAAGAUUAUUUAUAUAUUUAGGCUAAAAAUAAUGUUUAUCUCCUUAUGCAAUCCUGAUUAUGUGAAAAUAUGGUUGCUGUUUAAGUGAUGCUGAAUUUGCUGUGUGUUUAUAЖCUUAAGUGCUAUAUAUAUAUUUCGAUAUGUCUUACAUAUUCUCUAUUAAUAUAAAGAACCAAAUUUUGUCUGCUAUUUUGUAAAAAUAAACUACAAAAGCCUGAAUGAGAAAAUAAACUAUGUUUUCAAACUUGAGUCUCCUUUUUUUUUUUAACAAAUGAGAAAAUAAAAUUGACUUUUAAAUUAUA
Sequence (SHORT NAMES ENCODING)	AAGCUCCCCGACCCGGCGGCCUCGGCAGGACCCAUGGCGGAUUCCUCGCCCGCACUGUCCCUGCGGGAAGGCGGCCCCCGCGCGCCGCGGCCCUCGGCCCCCUCGCCGCCGCCGCGCUCGCGCUCCGGCUCCGAGUCCGAGGAGGCCGAGCUGUCGCUGAGCCUGGCCCGCACCAAGm6ACCCGCUCGUACGGCAGCACCGCCAGCGUGCGGGCGCCGCUGGGCGCCGGCGUCAUCGAGCGCCAUGUGGAGCACCGGGUCCGCGCGGGCGACACGCUGCAGGGCAUCGCGCUCAAGUACGGUGUCACGAUGGAACAGAUUAAAAGGGCCAAUAAm6ACUGUUUACCAAUGAUUGUAUAUUUCUGAAGAAAACUUUGAACAUCCCAGUUAUAUCAGAGAAGCCUUUGUUGUUUAAUGGm6ACUUAm6ACUCCAUUGAUUCUCCAGAAAAUGAAACUGCUGAUAACAGUUUUUCUCAGGAAGAGGAGCCAGUGGUGGCCGGGGAAGACCUCCCUCCUCCCAGUCCUCAAGAAUCUGAUGUUCAGCCUGUGCAGCCUGAGGAAGUGUCAGCCAGAGAUUUCCUGCAGAGACUUGACUUGCAGAUUAAGUUAUCAACACAGGCAGCCAAGAAGCUAAAAGAAGAGAGCAGAGAUGAAGAAAGUCCCUAUGCAACUUCCCUCUAUCACAGUUAGGUGAUUUGGGGGCAUAm6ACUCUAACCAAAAUUAAGAUAUGUUUGGACCAUAAAGAAUCCAACAACUGAAGAUUCAAAAACAYCCCUUCUGGAUUCCUAUAGUGUCCAUCUUAAAAUCAUAm6ACUAGGUAGUUCUACCUGCUGCAGUUGCACUGAAGUGAUUAGUUCCCUCUGGCUUUCUAUAAUUUUAAGUCUYUAUUAUGGCAUGAUGGCAAGGUUGUAGCCUAAAGCUCAUCACUUUUGUAGGUGGUGUUAGUUUUUAGACUAGCUUUUAUAAAUACUAAUUGACAUAAAGCAUCAAAGAUUAUUUAUAUAUUUAGGCUAAAAAUAAUGUUUAUCUCCUUAUGCAAUCCUGAUUAUGUGAAAAUAUGGUUGCUGUUUAAGUGAUGCUGAAUUUGCUGUGUGUUUAUAm6ACUUAAGUGCUAUAUAUAUAUUUCGAUAUGUCUUACAUAUUCUCUAUUAAUAUAAAGAACCAAAUUUUGUCUGCUAUUUUGUAAAAAUAAACUACAAAAGCCUGAAUGAGAAAAUAAACUAUGUUUUCAAACUUGAGUCUCCUUUUUUUUUUUAACAAAUGAGAAAAUAAAAUUGACUUUUAAAUUAUA
Sequence (MODOMICS CODE ENCODING)	AAGCUCCCCGACCCGGCGGCCUCGGCAGGACCCAUGGCGGAUUCCUCGCCCGCACUGUCCCUGCGGGAAGGCGGCCCCCGCGCGCCGCGGCCCUCGGCCCCCUCGCCGCCGCCGCGCUCGCGCUCCGGCUCCGAGUCCGAGGAGGCCGAGCUGUCGCUGAGCCUGGCCCGCACCAAG2000000006ACCCGCUCGUACGGCAGCACCGCCAGCGUGCGGGCGCCGCUGGGCGCCGGCGUCAUCGAGCGCCAUGUGGAGCACCGGGUCCGCGCGGGCGACACGCUGCAGGGCAUCGCGCUCAAGUACGGUGUCACGAUGGAACAGAUUAAAAGGGCCAAUAA2000000006ACUGUUUACCAAUGAUUGUAUAUUUCUGAAGAAAACUUUGAACAUCCCAGUUAUAUCAGAGAAGCCUUUGUUGUUUAAUGG2000000006ACUUA2000000006ACUCCAUUGAUUCUCCAGAAAAUGAAACUGCUGAUAACAGUUUUUCUCAGGAAGAGGAGCCAGUGGUGGCCGGGGAAGACCUCCCUCCUCCCAGUCCUCAAGAAUCUGAUGUUCAGCCUGUGCAGCCUGAGGAAGUGUCAGCCAGAGAUUUCCUGCAGAGACUUGACUUGCAGAUUAAGUUAUCAACACAGGCAGCCAAGAAGCUAAAAGAAGAGAGCAGAGAUGAAGAAAGUCCCUAUGCAACUUCCCUCUAUCACAGUUAGGUGAUUUGGGGGCAUA2000000006ACUCUAACCAAAAUUAAGAUAUGUUUGGACCAUAAAGAAUCCAACAACUGAAGAUUCAAAAACA2000000009UCCCUUCUGGAUUCCUAUAGUGUCCAUCUUAAAAUCAUA2000000006ACUAGGUAGUUCUACCUGCUGCAGUUGCACUGAAGUGAUUAGUUCCCUCUGGCUUUCUAUAAUUUUAAGUCU2000000009UUAUUAUGGCAUGAUGGCAAGGUUGUAGCCUAAAGCUCAUCACUUUUGUAGGUGGUGUUAGUUUUUAGACUAGCUUUUAUAAAUACUAAUUGACAUAAAGCAUCAAAGAUUAUUUAUAUAUUUAGGCUAAAAAUAAUGUUUAUCUCCUUAUGCAAUCCUGAUUAUGUGAAAAUAUGGUUGCUGUUUAAGUGAUGCUGAAUUUGCUGUGUGUUUAUA2000000006ACUUAAGUGCUAUAUAUAUAUUUCGAUAUGUCUUACAUAUUCUCUAUUAAUAUAAAGAACCAAAUUUUGUCUGCUAUUUUGUAAAAAUAAACUACAAAAGCCUGAAUGAGAAAAUAAACUAUGUUUUCAAACUUGAGUCUCCUUUUUUUUUUUAACAAAUGAGAAAAUAAAAUUGACUUUUAAAUUAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	178	333	414	419	698	762	801	873	1089
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A
Genomic Coordinates	15:51737478:-	15:51725095:-	15:51725014:-	15:51725009:-	15:51723590:-	15:51723526:-	15:51723487:-	15:51723415:-	15:51723199:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8