General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000558958
Gene ID:	ENSG00000166855
Gene Name:	CLPX
Sequence (UNICHARACTER ENCODING)	ACUCUGGUGAAUAGACGGCUGUGGGGCAGAGAAGCGUGAAGGCCUGGCUGCCGGGCAGGUGAACUCUCCACGGGGUCUAGGGCCCGCGAAAGGGUUCGGAACCGAGUCAGCGCGCCUUGCGGGCAGGAUUCACGCCGCUGUGACCCGGAGGUCCUCAGGGGGCGAAGCCCCGGCCUAGGCCUCGCGGAGAUGCCCAGCUGCGGUGCUUGUACUUGCGGCGCGGCGGCCGUCCGGCUCAUCACCPCCUCACUCGCCUCCGCGCAGAGAGGUAUUUCUGGUGGUCGCAUUCAUAUGUCAGUUUUAGGAAGGCUUGGGACAUUUGAAACUCAGAUUCUGCAAAGAGCUCCUCUUAGAUCCUPUACAGAAЖCACCAGCAUACUUUGCCUCAAAAGAUGGGAUAAGUAAAGAUGGUUCUGGAGAUGGAAAUAAGAAAUCAGCAAGUGAGGGAAGUAGUAAGAAAUCAGGCUCUGGGAAUUCUGGGAAAGGUGGAAACCAGCUGCGCUGUCCUAAAUGUGGCGACUUGUGCACACAUGUAGAGACCUUUGUAUCAPCCACCCGUUUUGUCAAGUGUGAAAAGUGUCAUCAUUUUUUUGUUGUGCUAUCUGAAGCAGACUCAAAGAAAAGCAUAAUUAAAGAACCUGAAUCAGCAGCAGAAGCUGUAAAAUUGGCAUUCCAACAGAAACCACCACCUCCCCCUAAGAAGAUUUAUAЖCUACCUCGACAAGUAUGUUGUUGGCCAGUCAUUUGCUAAGAAGGUGCUUUCAGUUGCUGUGUACAAUCAUUAUAAGAGAAUAUAUAAUAAUAUCCCAGCUAAUCUGAGACAGCAAGCAGAGGUUGAGAAGCAGACAUCAUUAЖCACCAAGAGAGUUAGAAAUAAGAAGACGGGAGGAUGAGUACAGAUUUACAAAAUUGCUUCAGAUUGCUGGAAUUAGCCCACAUGGUAAUGCUPUAGGAGCAUCAAUGCAGCAACAGGUAAAUCAACAAAUACCUCAGGAAAAACGAGGAGGUGAAGUAUUGGAUUCUUCUCAUGAUGACAUAAAACUUGAAAAAAGUAAUAUUUUGCUGCUUGGACCAACUGGGUCAGGUAAAACUCUGCUGGCACAAACCCUAGCUAAAUGCCUUGAUGUCCCUUUUGCUAUCUGUGACUGUACAACUUUGACUCAGGCUGGAUAUGUAGGCGAAGAUAUUGAAUCUGUGAUUGCAAAACUACUCCAAGAUGCCAAUUAUAAUGUGGAAAAAGCACAACAAGGAAUUGUCUUUCUGGAUGAAGUAGAUAAGAUUGGCAGUGUGCCAGGCAUUCAUCAAUUACGGGAUGUAGGUGGAGAAGGCGUUCAGCAAGUAAGCAGUUGAGUAUUUUGUUCAAGCCCACUAAAAGGAAGGGAAUACAUCAACCUCCCAAAUAUUGUACGUUUGGUUUCACAUUCAAUUAGAUUCUGUUUUAUUUCUUCCGCCCCCAAACUCCACAUAUCAUUUUGAAGUAGUUUAGAUCCUAAAAG
Sequence (SHORT NAMES ENCODING)	ACUCUGGUGAAUAGACGGCUGUGGGGCAGAGAAGCGUGAAGGCCUGGCUGCCGGGCAGGUGAACUCUCCACGGGGUCUAGGGCCCGCGAAAGGGUUCGGAACCGAGUCAGCGCGCCUUGCGGGCAGGAUUCACGCCGCUGUGACCCGGAGGUCCUCAGGGGGCGAAGCCCCGGCCUAGGCCUCGCGGAGAUGCCCAGCUGCGGUGCUUGUACUUGCGGCGCGGCGGCCGUCCGGCUCAUCACCYCCUCACUCGCCUCCGCGCAGAGAGGUAUUUCUGGUGGUCGCAUUCAUAUGUCAGUUUUAGGAAGGCUUGGGACAUUUGAAACUCAGAUUCUGCAAAGAGCUCCUCUUAGAUCCUYUACAGAAm6ACACCAGCAUACUUUGCCUCAAAAGAUGGGAUAAGUAAAGAUGGUUCUGGAGAUGGAAAUAAGAAAUCAGCAAGUGAGGGAAGUAGUAAGAAAUCAGGCUCUGGGAAUUCUGGGAAAGGUGGAAACCAGCUGCGCUGUCCUAAAUGUGGCGACUUGUGCACACAUGUAGAGACCUUUGUAUCAYCCACCCGUUUUGUCAAGUGUGAAAAGUGUCAUCAUUUUUUUGUUGUGCUAUCUGAAGCAGACUCAAAGAAAAGCAUAAUUAAAGAACCUGAAUCAGCAGCAGAAGCUGUAAAAUUGGCAUUCCAACAGAAACCACCACCUCCCCCUAAGAAGAUUUAUAm6ACUACCUCGACAAGUAUGUUGUUGGCCAGUCAUUUGCUAAGAAGGUGCUUUCAGUUGCUGUGUACAAUCAUUAUAAGAGAAUAUAUAAUAAUAUCCCAGCUAAUCUGAGACAGCAAGCAGAGGUUGAGAAGCAGACAUCAUUAm6ACACCAAGAGAGUUAGAAAUAAGAAGACGGGAGGAUGAGUACAGAUUUACAAAAUUGCUUCAGAUUGCUGGAAUUAGCCCACAUGGUAAUGCUYUAGGAGCAUCAAUGCAGCAACAGGUAAAUCAACAAAUACCUCAGGAAAAACGAGGAGGUGAAGUAUUGGAUUCUUCUCAUGAUGACAUAAAACUUGAAAAAAGUAAUAUUUUGCUGCUUGGACCAACUGGGUCAGGUAAAACUCUGCUGGCACAAACCCUAGCUAAAUGCCUUGAUGUCCCUUUUGCUAUCUGUGACUGUACAACUUUGACUCAGGCUGGAUAUGUAGGCGAAGAUAUUGAAUCUGUGAUUGCAAAACUACUCCAAGAUGCCAAUUAUAAUGUGGAAAAAGCACAACAAGGAAUUGUCUUUCUGGAUGAAGUAGAUAAGAUUGGCAGUGUGCCAGGCAUUCAUCAAUUACGGGAUGUAGGUGGAGAAGGCGUUCAGCAAGUAAGCAGUUGAGUAUUUUGUUCAAGCCCACUAAAAGGAAGGGAAUACAUCAACCUCCCAAAUAUUGUACGUUUGGUUUCACAUUCAAUUAGAUUCUGUUUUAUUUCUUCCGCCCCCAAACUCCACAUAUCAUUUUGAAGUAGUUUAGAUCCUAAAAG
Sequence (MODOMICS CODE ENCODING)	ACUCUGGUGAAUAGACGGCUGUGGGGCAGAGAAGCGUGAAGGCCUGGCUGCCGGGCAGGUGAACUCUCCACGGGGUCUAGGGCCCGCGAAAGGGUUCGGAACCGAGUCAGCGCGCCUUGCGGGCAGGAUUCACGCCGCUGUGACCCGGAGGUCCUCAGGGGGCGAAGCCCCGGCCUAGGCCUCGCGGAGAUGCCCAGCUGCGGUGCUUGUACUUGCGGCGCGGCGGCCGUCCGGCUCAUCACC2000000009UCCUCACUCGCCUCCGCGCAGAGAGGUAUUUCUGGUGGUCGCAUUCAUAUGUCAGUUUUAGGAAGGCUUGGGACAUUUGAAACUCAGAUUCUGCAAAGAGCUCCUCUUAGAUCCU2000000009UUACAGAA2000000006ACACCAGCAUACUUUGCCUCAAAAGAUGGGAUAAGUAAAGAUGGUUCUGGAGAUGGAAAUAAGAAAUCAGCAAGUGAGGGAAGUAGUAAGAAAUCAGGCUCUGGGAAUUCUGGGAAAGGUGGAAACCAGCUGCGCUGUCCUAAAUGUGGCGACUUGUGCACACAUGUAGAGACCUUUGUAUCA2000000009UCCACCCGUUUUGUCAAGUGUGAAAAGUGUCAUCAUUUUUUUGUUGUGCUAUCUGAAGCAGACUCAAAGAAAAGCAUAAUUAAAGAACCUGAAUCAGCAGCAGAAGCUGUAAAAUUGGCAUUCCAACAGAAACCACCACCUCCCCCUAAGAAGAUUUAUA2000000006ACUACCUCGACAAGUAUGUUGUUGGCCAGUCAUUUGCUAAGAAGGUGCUUUCAGUUGCUGUGUACAAUCAUUAUAAGAGAAUAUAUAAUAAUAUCCCAGCUAAUCUGAGACAGCAAGCAGAGGUUGAGAAGCAGACAUCAUUA2000000006ACACCAAGAGAGUUAGAAAUAAGAAGACGGGAGGAUGAGUACAGAUUUACAAAAUUGCUUCAGAUUGCUGGAAUUAGCCCACAUGGUAAUGCU2000000009UUAGGAGCAUCAAUGCAGCAACAGGUAAAUCAACAAAUACCUCAGGAAAAACGAGGAGGUGAAGUAUUGGAUUCUUCUCAUGAUGACAUAAAACUUGAAAAAAGUAAUAUUUUGCUGCUUGGACCAACUGGGUCAGGUAAAACUCUGCUGGCACAAACCCUAGCUAAAUGCCUUGAUGUCCCUUUUGCUAUCUGUGACUGUACAACUUUGACUCAGGCUGGAUAUGUAGGCGAAGAUAUUGAAUCUGUGAUUGCAAAACUACUCCAAGAUGCCAAUUAUAAUGUGGAAAAAGCACAACAAGGAAUUGUCUUUCUGGAUGAAGUAGAUAAGAUUGGCAGUGUGCCAGGCAUUCAUCAAUUACGGGAUGUAGGUGGAGAAGGCGUUCAGCAAGUAAGCAGUUGAGUAUUUUGUUCAAGCCCACUAAAAGGAAGGGAAUACAUCAACCUCCCAAAUAUUGUACGUUUGGUUUCACAUUCAAUUAGAUUCUGUUUUAUUUCUUCCGCCCCCAAACUCCACAUAUCAUUUUGAAGUAGUUUAGAUCCUAAAAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	244	359	367	550	710	853	946
Modification Positions	Y	Y	m6A	Y	m6A	m6A	Y
Genomic Coordinates	15:65185099:-	15:65180114:-	15:65180106:-	15:65166783:-	15:65164181:-	15:65164038:-	15:65158710:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 dknfVe6BK8aP	bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr