Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000316967
Gene ID: ENSG00000290689
Gene Name: None
Sequence (UNICHARACTER ENCODING) AGACGUUACUGCCCUCUUGCGUGCCCCGGCCACCCCCGGGCGGCUUGUAGCCGGUGCGCGGGGUGGCUGGGGCUACGUGCAGAGCUGUCGCGGAGCCGGAACAGCAGCGGUGAAGCCCCUCGGCUCGGCCGAGACCGCCGUGCCCAUUGCUCGCCUCGGUUGCCGCCGCUUUAGCCGCAGCCGCUGCUGCCGCCGCCGGGGGAGAGGCAGCCUAUUGUCUUUCUCCGCGGCGAAGGUGAGGAGCUGUCUCGGCUCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGAGAUGGAGGAGGACAUCUGGACAGUGAGCAGGAGGCGCCUCGGCCCAUGCCGAACAUCCCAGGGGACCUGGAGAGCCGGGAGGCCAUGGUGGCAUUUUUCAACUCCGCUGGAGCCAGUGCCCAGGAGGAACAAAGGGUGUGCUGCCAGCCCCUGGCUCACCCAGUGGCCUCGUCCCAGAAGAAGCCAGAGGUAGCGGCCCCAGCCCCAGAGAGUGGGGGUGAGUCUGUGUUUGGGGAGACCCACCGGGCCCUGCAGGGGGCCAUGGAGAAGCUGCAGGAAAGUACAUCAGCCAGGGGGCAGUGUCAGAGACGCAGCACUGGGAGAGGAGGACAUCGUCAGGCUGGCCCAGGACCAGGAGGAGAUGAAGGUGAACCUGCAGGAGCUGCGGGGCAGGUGUUGCAGCUUGUGGGCGACCACAAGGAGGGGCAUGGCAAAUUUUGACCAUUGCCCAGAACCCUGCUGAUGAGCCCACUCUAGGAGCCCCAGUAGCCCAGGAGCUUGGGUGUGCUGACGAGCAGGGUGGCUUUUAUCCUAGAUCACCACUGGAUUGCUGACAGAUAGAGGAGGUGGGACCCUGACUAUCACCCCUAAUCUGCAGUGGAUUUGGCUCUCGGCACUCCCAGGCUGGGAGCUGGAUACCUGCCCUGGCAGCAUGGCUCAGACUGCAUGACAGUCACAGACUCGCCUCUGCUCCUGUGGUCCAGUGGCCGGACACCCCCUGGGAUGGCUCAAAGGAGUCAGGACUUGGAAGUGGGGACAUCAGGGUAGCUGAAGGAAAUCCACACACCCAGAGCAUCUCGGAGUUCAGACUCUCAGACCUGAAGUAGGCGCCCCCGGGACUGGGCUAGGAGUUGGACGGAAUGGAGGAUGGAGGACAGCGAGAAGAAAGGAAGAGAAAUGCAAAGUGUGGGCAGCCGCCAAGAGUGAAAAUAGAGGGAAGUGUCAUGCAAGUGCUGGACAGAAGGCGGCAGGUGGGACGAGCCCCACAGCCCCCUCCUCAAAAACGACCACCUCCAGGACUCAGUGAUCCCUGGGGGGCAGGCUCUGCCAGCCCUCGGCCACACGUGGCUCCGGCACCCAUGGUCCCAGUGCCUUGGAUGGAGACGGCCAGUUCUGGCGGCCAGAUGUGGUGCUCUGGAAUCCAGUCCCAUUUCCUUCCUGGCCACGCCUGUCCAGCGGCCUCUUUGGCUGCAUUCAGCCCCUACUUACCUGGGGACCCCGGCUGGGGCACAAGAGCACCAGGGGGGUAGGGCCCAAAGGGAUCAGGGGAAGCCUCUGGCCUGGAGGGUAUGGGGCACACUUCCCCAAGGGCGGACCCAGCAGGAGGAAGCCCAGGAGCUGGGUCCUGCCGCCCAGGAGCUGGGCCCUGCCACCCAGGCCGGGCUAGGGACAUGGCAGGGCCUGGGCAUCCUGGCGCUGGACUUGGGCGACCUGGGAGGCACAGGGAGGGGAGAGAUGGGCGGCCCCGCCCCAGCGCAGUGCCGGCCACACCCAUGCACUGAAGCUCCUCCCUGCCACACCCCAAGGCGGUUGCCGGAGCUUAAGCCCCGCCCCCAGCAGCGAGAACAUCCCACCCCUCCCCCCCCCCCCCCCGCAGCCAGUGCUCCUUGUCAAGCUCCCCCCGUCACUCCAGGUGGGAGCCACCCCGGUGAGGGGGUGUGCCACUUGUCCCCAGGGCACUCCUCUGGGCAUCCCGGGUGGGGGAUUUUGGGGCCGUGGGGGGCAGUCUCUGGUACCUGUGUGCGUCAGGGAUGCUCUGCACCUGCAACCAGGUGUCGUCCACGGGCGGGGGCAUGGUAACAGUGGUCCUGUUGAUGUCACCGAUGAUGCUGAGCGCCUCCUUCAGCGCGUGGUGCAUGUGCAGCAUCUCGUCGUGCUGCUGUGCCUGCUCUGCCAACUCCUCCAUCAGUGUGUUCUGGUUCCCACAUGAGUЖCAUAUUGGCCAGCGGCUCCGAGAUGAUGAACUCCGGGGUCUGAGAGUGGGCAAACAGGGAAGAAGGUUGGGACCUGGUGCCUGUGCCGCCCUGGCUGCCUUGCUGGGCCCUUCUGGGACUGUGCGCUGGACUUGGAGCCCCUUGGAGUAUGGCUUUUCACACGGGCUUCUAUACCGCUUCGACUGGAAGAUCCACCUCCCCACUGCCUUUUCUCACUCAGAUGGGGACACCGAGGUCCAGAGGAAAAGACACCUGUCAAAUGUCACAGAUCUGGGAGGGGЖCUUAAGACCUAUCAUGCCAAGAGG
Sequence (SHORT NAMES ENCODING) AGACGUUACUGCCCUCUUGCGUGCCCCGGCCACCCCCGGGCGGCUUGUAGCCGGUGCGCGGGGUGGCUGGGGCUACGUGCAGAGCUGUCGCGGAGCCGGAACAGCAGCGGUGAAGCCCCUCGGCUCGGCCGAGACCGCCGUGCCCAUUGCUCGCCUCGGUUGCCGCCGCUUUAGCCGCAGCCGCUGCUGCCGCCGCCGGGGGAGAGGCAGCCUAUUGUCUUUCUCCGCGGCGAAGGUGAGGAGCUGUCUCGGCUCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGAGAUGGAGGAGGACAUCUGGACAGUGAGCAGGAGGCGCCUCGGCCCAUGCCGAACAUCCCAGGGGACCUGGAGAGCCGGGAGGCCAUGGUGGCAUUUUUCAACUCCGCUGGAGCCAGUGCCCAGGAGGAACAAAGGGUGUGCUGCCAGCCCCUGGCUCACCCAGUGGCCUCGUCCCAGAAGAAGCCAGAGGUAGCGGCCCCAGCCCCAGAGAGUGGGGGUGAGUCUGUGUUUGGGGAGACCCACCGGGCCCUGCAGGGGGCCAUGGAGAAGCUGCAGGAAAGUACAUCAGCCAGGGGGCAGUGUCAGAGACGCAGCACUGGGAGAGGAGGACAUCGUCAGGCUGGCCCAGGACCAGGAGGAGAUGAAGGUGAACCUGCAGGAGCUGCGGGGCAGGUGUUGCAGCUUGUGGGCGACCACAAGGAGGGGCAUGGCAAAUUUUGACCAUUGCCCAGAACCCUGCUGAUGAGCCCACUCUAGGAGCCCCAGUAGCCCAGGAGCUUGGGUGUGCUGACGAGCAGGGUGGCUUUUAUCCUAGAUCACCACUGGAUUGCUGACAGAUAGAGGAGGUGGGACCCUGACUAUCACCCCUAAUCUGCAGUGGAUUUGGCUCUCGGCACUCCCAGGCUGGGAGCUGGAUACCUGCCCUGGCAGCAUGGCUCAGACUGCAUGACAGUCACAGACUCGCCUCUGCUCCUGUGGUCCAGUGGCCGGACACCCCCUGGGAUGGCUCAAAGGAGUCAGGACUUGGAAGUGGGGACAUCAGGGUAGCUGAAGGAAAUCCACACACCCAGAGCAUCUCGGAGUUCAGACUCUCAGACCUGAAGUAGGCGCCCCCGGGACUGGGCUAGGAGUUGGACGGAAUGGAGGAUGGAGGACAGCGAGAAGAAAGGAAGAGAAAUGCAAAGUGUGGGCAGCCGCCAAGAGUGAAAAUAGAGGGAAGUGUCAUGCAAGUGCUGGACAGAAGGCGGCAGGUGGGACGAGCCCCACAGCCCCCUCCUCAAAAACGACCACCUCCAGGACUCAGUGAUCCCUGGGGGGCAGGCUCUGCCAGCCCUCGGCCACACGUGGCUCCGGCACCCAUGGUCCCAGUGCCUUGGAUGGAGACGGCCAGUUCUGGCGGCCAGAUGUGGUGCUCUGGAAUCCAGUCCCAUUUCCUUCCUGGCCACGCCUGUCCAGCGGCCUCUUUGGCUGCAUUCAGCCCCUACUUACCUGGGGACCCCGGCUGGGGCACAAGAGCACCAGGGGGGUAGGGCCCAAAGGGAUCAGGGGAAGCCUCUGGCCUGGAGGGUAUGGGGCACACUUCCCCAAGGGCGGACCCAGCAGGAGGAAGCCCAGGAGCUGGGUCCUGCCGCCCAGGAGCUGGGCCCUGCCACCCAGGCCGGGCUAGGGACAUGGCAGGGCCUGGGCAUCCUGGCGCUGGACUUGGGCGACCUGGGAGGCACAGGGAGGGGAGAGAUGGGCGGCCCCGCCCCAGCGCAGUGCCGGCCACACCCAUGCACUGAAGCUCCUCCCUGCCACACCCCAAGGCGGUUGCCGGAGCUUAAGCCCCGCCCCCAGCAGCGAGAACAUCCCACCCCUCCCCCCCCCCCCCCCGCAGCCAGUGCUCCUUGUCAAGCUCCCCCCGUCACUCCAGGUGGGAGCCACCCCGGUGAGGGGGUGUGCCACUUGUCCCCAGGGCACUCCUCUGGGCAUCCCGGGUGGGGGAUUUUGGGGCCGUGGGGGGCAGUCUCUGGUACCUGUGUGCGUCAGGGAUGCUCUGCACCUGCAACCAGGUGUCGUCCACGGGCGGGGGCAUGGUAACAGUGGUCCUGUUGAUGUCACCGAUGAUGCUGAGCGCCUCCUUCAGCGCGUGGUGCAUGUGCAGCAUCUCGUCGUGCUGCUGUGCCUGCUCUGCCAACUCCUCCAUCAGUGUGUUCUGGUUCCCACAUGAGUm6ACAUAUUGGCCAGCGGCUCCGAGAUGAUGAACUCCGGGGUCUGAGAGUGGGCAAACAGGGAAGAAGGUUGGGACCUGGUGCCUGUGCCGCCCUGGCUGCCUUGCUGGGCCCUUCUGGGACUGUGCGCUGGACUUGGAGCCCCUUGGAGUAUGGCUUUUCACACGGGCUUCUAUACCGCUUCGACUGGAAGAUCCACCUCCCCACUGCCUUUUCUCACUCAGAUGGGGACACCGAGGUCCAGAGGAAAAGACACCUGUCAAAUGUCACAGAUCUGGGAGGGGm6ACUUAAGACCUAUCAUGCCAAGAGG
Sequence (MODOMICS CODE ENCODING) AGACGUUACUGCCCUCUUGCGUGCCCCGGCCACCCCCGGGCGGCUUGUAGCCGGUGCGCGGGGUGGCUGGGGCUACGUGCAGAGCUGUCGCGGAGCCGGAACAGCAGCGGUGAAGCCCCUCGGCUCGGCCGAGACCGCCGUGCCCAUUGCUCGCCUCGGUUGCCGCCGCUUUAGCCGCAGCCGCUGCUGCCGCCGCCGGGGGAGAGGCAGCCUAUUGUCUUUCUCCGCGGCGAAGGUGAGGAGCUGUCUCGGCUCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGAGAUGGAGGAGGACAUCUGGACAGUGAGCAGGAGGCGCCUCGGCCCAUGCCGAACAUCCCAGGGGACCUGGAGAGCCGGGAGGCCAUGGUGGCAUUUUUCAACUCCGCUGGAGCCAGUGCCCAGGAGGAACAAAGGGUGUGCUGCCAGCCCCUGGCUCACCCAGUGGCCUCGUCCCAGAAGAAGCCAGAGGUAGCGGCCCCAGCCCCAGAGAGUGGGGGUGAGUCUGUGUUUGGGGAGACCCACCGGGCCCUGCAGGGGGCCAUGGAGAAGCUGCAGGAAAGUACAUCAGCCAGGGGGCAGUGUCAGAGACGCAGCACUGGGAGAGGAGGACAUCGUCAGGCUGGCCCAGGACCAGGAGGAGAUGAAGGUGAACCUGCAGGAGCUGCGGGGCAGGUGUUGCAGCUUGUGGGCGACCACAAGGAGGGGCAUGGCAAAUUUUGACCAUUGCCCAGAACCCUGCUGAUGAGCCCACUCUAGGAGCCCCAGUAGCCCAGGAGCUUGGGUGUGCUGACGAGCAGGGUGGCUUUUAUCCUAGAUCACCACUGGAUUGCUGACAGAUAGAGGAGGUGGGACCCUGACUAUCACCCCUAAUCUGCAGUGGAUUUGGCUCUCGGCACUCCCAGGCUGGGAGCUGGAUACCUGCCCUGGCAGCAUGGCUCAGACUGCAUGACAGUCACAGACUCGCCUCUGCUCCUGUGGUCCAGUGGCCGGACACCCCCUGGGAUGGCUCAAAGGAGUCAGGACUUGGAAGUGGGGACAUCAGGGUAGCUGAAGGAAAUCCACACACCCAGAGCAUCUCGGAGUUCAGACUCUCAGACCUGAAGUAGGCGCCCCCGGGACUGGGCUAGGAGUUGGACGGAAUGGAGGAUGGAGGACAGCGAGAAGAAAGGAAGAGAAAUGCAAAGUGUGGGCAGCCGCCAAGAGUGAAAAUAGAGGGAAGUGUCAUGCAAGUGCUGGACAGAAGGCGGCAGGUGGGACGAGCCCCACAGCCCCCUCCUCAAAAACGACCACCUCCAGGACUCAGUGAUCCCUGGGGGGCAGGCUCUGCCAGCCCUCGGCCACACGUGGCUCCGGCACCCAUGGUCCCAGUGCCUUGGAUGGAGACGGCCAGUUCUGGCGGCCAGAUGUGGUGCUCUGGAAUCCAGUCCCAUUUCCUUCCUGGCCACGCCUGUCCAGCGGCCUCUUUGGCUGCAUUCAGCCCCUACUUACCUGGGGACCCCGGCUGGGGCACAAGAGCACCAGGGGGGUAGGGCCCAAAGGGAUCAGGGGAAGCCUCUGGCCUGGAGGGUAUGGGGCACACUUCCCCAAGGGCGGACCCAGCAGGAGGAAGCCCAGGAGCUGGGUCCUGCCGCCCAGGAGCUGGGCCCUGCCACCCAGGCCGGGCUAGGGACAUGGCAGGGCCUGGGCAUCCUGGCGCUGGACUUGGGCGACCUGGGAGGCACAGGGAGGGGAGAGAUGGGCGGCCCCGCCCCAGCGCAGUGCCGGCCACACCCAUGCACUGAAGCUCCUCCCUGCCACACCCCAAGGCGGUUGCCGGAGCUUAAGCCCCGCCCCCAGCAGCGAGAACAUCCCACCCCUCCCCCCCCCCCCCCCGCAGCCAGUGCUCCUUGUCAAGCUCCCCCCGUCACUCCAGGUGGGAGCCACCCCGGUGAGGGGGUGUGCCACUUGUCCCCAGGGCACUCCUCUGGGCAUCCCGGGUGGGGGAUUUUGGGGCCGUGGGGGGCAGUCUCUGGUACCUGUGUGCGUCAGGGAUGCUCUGCACCUGCAACCAGGUGUCGUCCACGGGCGGGGGCAUGGUAACAGUGGUCCUGUUGAUGUCACCGAUGAUGCUGAGCGCCUCCUUCAGCGCGUGGUGCAUGUGCAGCAUCUCGUCGUGCUGCUGUGCCUGCUCUGCCAACUCCUCCAUCAGUGUGUUCUGGUUCCCACAUGAGU2000000006ACAUAUUGGCCAGCGGCUCCGAGAUGAUGAACUCCGGGGUCUGAGAGUGGGCAAACAGGGAAGAAGGUUGGGACCUGGUGCCUGUGCCGCCCUGGCUGCCUUGCUGGGCCCUUCUGGGACUGUGCGCUGGACUUGGAGCCCCUUGGAGUAUGGCUUUUCACACGGGCUUCUAUACCGCUUCGACUGGAAGAUCCACCUCCCCACUGCCUUUUCUCACUCAGAUGGGGACACCGAGGUCCAGAGGAAAAGACACCUGUCAAAUGUCACAGAUCUGGGAGGGG2000000006ACUUAAGACCUAUCAUGCCAAGAGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 2220 2501
Modification Positions m6A m6A
Genomic Coordinates 15:84199617:- 15:84199336:-
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
5Nnepx5V7yHo
aHkqKEJkRYyb
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9