Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000425574
Gene ID: ENSG00000260916
Gene Name: CCPG1
Sequence (UNICHARACTER ENCODING) AUAAGAGGCGUCAUUGGCGCCCGAGCUGUGACCGCCGCCACUGGGGCAGCCAGCACAAUCGGGCGGAGGUGGCGCUGCCCCUUCAGACCUGAAAGAUGUCUGAAAAUUCCAGUGACAGUGAUUCAUCUUGUGGUUGGACUGUCAUCAGUCAUGAGGGGUCAGAUAUAGAAAUGUUGAAUUCUGUGACCCCCACUGACAGCUGUGAGCCCGCCCCAGAAUGUUCAUCUUUAGAGCAAGAGGAGCUUCAAGCAUUGCAGAUAGAGCAAGGAGAAAGCAGCCAAAAUGGCACAGUGCUUAUGGAAGAAACUGCUUAUCCAGCUUUGGAGGAAACCAGCUCAACAAUUGAGGCAGAGGAACAAAAGAUACCCGAAGACAGUAUCUAUAUUGGAACUGCCAGUGAUGAUUCUGAUAUUGUUACCCUUGAGCCACCUAAGUUAGAAGAAAUUGGAAAUCAAGAAGUUGUCAUUGUUGAAGAAGCACAGAGUUCAGAAGACUUUAACAUGGGCUCUUCCUCUAGCAGCCAGUAUACUUUCUGUCAGCCAGAAACUGUAUUUUCAUCUCAGCCUAGUGACGAUGAAUCAAGUAGUGAUGAAACCAGUAAUCAGCCCAGUCCUGCCUPUAGACGACGCCGUGCUAGGAAGAAGACCGUUUCUGCUUCAGAAUCUGAAGЖCCGGCUAGUUGCUGAACAAGAAACUGAACCUUCUAAGGAGUUGAGUAAACGUCAGUUCAGUAGUGGUCUCAAUAAGUGUGUUAUACUUGCUUUGGUGAUUGCAAUCAGCAUGGGAUUUGGCCAUUUCUAUGGCACAAUUCAGAUUCAGAAGCGUCAACAGUUAGUCAGAAAGAUACAUGAAGAUGAAUUGAAUGAUAUGAAGGAUUAUCUUUCCCAGUGUCAACAGGAACAAGAAUCUUUUAUAGAUUAUAAGUCAUUGAAAGAAAAUCUUGCAAGGUGUUGGACACUUACUGAAGCAGAGAAGAUGUCCUUUGAAACUCAGAAAACGAACCUUGCUACЖGAAAAUCAGUAUUUAAGAAAGCUCUUCACUGЖCUUUGUUAAUGAUGUUAAAGAUUAUCUUAGAAACAUGAAGGAAUAUGAAGUAGAUAAUGAUGGAGUAUUUGAGAAGUUGGAUGAAUAUAUAUAUAGЖCACUUCUUUGGUCACACUUUUUCCCCUCCAUAUGGЖCCCAGUCGACCUGAUAAAAAGCAACGUAUGGUAAAUAUUGAAAACUCCAGGCAUCGAAAACAAGAGCAGAAGCACCUUCAGCCACAGCCUUAUAAAAGGGAAGGUAAAUGGCAUAAAUAUGGUCGCACUAAUGGAAGACAAAUGGCAAAUCUUGAAAUAGAAUUGGGGCAAUUACCUUUUGAUCCUCAAUACUGAUUCACAAUUGAGUUAAAUUAGACAACUGUAAGAGAAAAAUUUAUGCUUUGUAUAAUGUUUGGUAUUGAAACUAAUGAAAUUACCAAGAUGACAAUGUCUUUUCUUUUGUUUCUAAGUAUCAGUUUGAUAACUUUAUAUUAUUCCUCAGAAGCAUUAGUUAAAAGUCUACUAACCUGCAUUUUCCUGUAGUUUAGCUUCGUUGAAUUUUUUUUGACACUGGAAAUGUUCAACUGUAGUUUUAUUAAGGAAGCCAGGCAUGCAACAGAUUUUGUGCAUGAAAUGAGACUUCCUUUCAGUGUAAGAGCUUAAAGCAAGCUCAGUCAUACAUGACAAAGUGUAAUUAACACUGAUGUUUGUGUUAAAUUUGCAGCAGAGCUUGAGAAAAGUACAUUGUUCUGGAAUUUCAUCAUUAACAUUUUAUAAUCUUACACUCACUUCUUGUCUUUUUGUGGGUUCAAGAGCCCUCUGACUUGUGAAGAAUUUGCUGCCCUCUUAAGAGCUUGCUGACUUGUUUUCUUGUGAAAUUUUUUGCACAUCUGAAUAUCGUGGAAGAAACAAUAAAACUACACCAUGAG
Sequence (SHORT NAMES ENCODING) AUAAGAGGCGUCAUUGGCGCCCGAGCUGUGACCGCCGCCACUGGGGCAGCCAGCACAAUCGGGCGGAGGUGGCGCUGCCCCUUCAGACCUGAAAGAUGUCUGAAAAUUCCAGUGACAGUGAUUCAUCUUGUGGUUGGACUGUCAUCAGUCAUGAGGGGUCAGAUAUAGAAAUGUUGAAUUCUGUGACCCCCACUGACAGCUGUGAGCCCGCCCCAGAAUGUUCAUCUUUAGAGCAAGAGGAGCUUCAAGCAUUGCAGAUAGAGCAAGGAGAAAGCAGCCAAAAUGGCACAGUGCUUAUGGAAGAAACUGCUUAUCCAGCUUUGGAGGAAACCAGCUCAACAAUUGAGGCAGAGGAACAAAAGAUACCCGAAGACAGUAUCUAUAUUGGAACUGCCAGUGAUGAUUCUGAUAUUGUUACCCUUGAGCCACCUAAGUUAGAAGAAAUUGGAAAUCAAGAAGUUGUCAUUGUUGAAGAAGCACAGAGUUCAGAAGACUUUAACAUGGGCUCUUCCUCUAGCAGCCAGUAUACUUUCUGUCAGCCAGAAACUGUAUUUUCAUCUCAGCCUAGUGACGAUGAAUCAAGUAGUGAUGAAACCAGUAAUCAGCCCAGUCCUGCCUYUAGACGACGCCGUGCUAGGAAGAAGACCGUUUCUGCUUCAGAAUCUGAAGm6ACCGGCUAGUUGCUGAACAAGAAACUGAACCUUCUAAGGAGUUGAGUAAACGUCAGUUCAGUAGUGGUCUCAAUAAGUGUGUUAUACUUGCUUUGGUGAUUGCAAUCAGCAUGGGAUUUGGCCAUUUCUAUGGCACAAUUCAGAUUCAGAAGCGUCAACAGUUAGUCAGAAAGAUACAUGAAGAUGAAUUGAAUGAUAUGAAGGAUUAUCUUUCCCAGUGUCAACAGGAACAAGAAUCUUUUAUAGAUUAUAAGUCAUUGAAAGAAAAUCUUGCAAGGUGUUGGACACUUACUGAAGCAGAGAAGAUGUCCUUUGAAACUCAGAAAACGAACCUUGCUACm6AGAAAAUCAGUAUUUAAGAAAGCUCUUCACUGm6ACUUUGUUAAUGAUGUUAAAGAUUAUCUUAGAAACAUGAAGGAAUAUGAAGUAGAUAAUGAUGGAGUAUUUGAGAAGUUGGAUGAAUAUAUAUAUAGm6ACACUUCUUUGGUCACACUUUUUCCCCUCCAUAUGGm6ACCCAGUCGACCUGAUAAAAAGCAACGUAUGGUAAAUAUUGAAAACUCCAGGCAUCGAAAACAAGAGCAGAAGCACCUUCAGCCACAGCCUUAUAAAAGGGAAGGUAAAUGGCAUAAAUAUGGUCGCACUAAUGGAAGACAAAUGGCAAAUCUUGAAAUAGAAUUGGGGCAAUUACCUUUUGAUCCUCAAUACUGAUUCACAAUUGAGUUAAAUUAGACAACUGUAAGAGAAAAAUUUAUGCUUUGUAUAAUGUUUGGUAUUGAAACUAAUGAAAUUACCAAGAUGACAAUGUCUUUUCUUUUGUUUCUAAGUAUCAGUUUGAUAACUUUAUAUUAUUCCUCAGAAGCAUUAGUUAAAAGUCUACUAACCUGCAUUUUCCUGUAGUUUAGCUUCGUUGAAUUUUUUUUGACACUGGAAAUGUUCAACUGUAGUUUUAUUAAGGAAGCCAGGCAUGCAACAGAUUUUGUGCAUGAAAUGAGACUUCCUUUCAGUGUAAGAGCUUAAAGCAAGCUCAGUCAUACAUGACAAAGUGUAAUUAACACUGAUGUUUGUGUUAAAUUUGCAGCAGAGCUUGAGAAAAGUACAUUGUUCUGGAAUUUCAUCAUUAACAUUUUAUAAUCUUACACUCACUUCUUGUCUUUUUGUGGGUUCAAGAGCCCUCUGACUUGUGAAGAAUUUGCUGCCCUCUUAAGAGCUUGCUGACUUGUUUUCUUGUGAAAUUUUUUGCACAUCUGAAUAUCGUGGAAGAAACAAUAAAACUACACCAUGAG
Sequence (MODOMICS CODE ENCODING) AUAAGAGGCGUCAUUGGCGCCCGAGCUGUGACCGCCGCCACUGGGGCAGCCAGCACAAUCGGGCGGAGGUGGCGCUGCCCCUUCAGACCUGAAAGAUGUCUGAAAAUUCCAGUGACAGUGAUUCAUCUUGUGGUUGGACUGUCAUCAGUCAUGAGGGGUCAGAUAUAGAAAUGUUGAAUUCUGUGACCCCCACUGACAGCUGUGAGCCCGCCCCAGAAUGUUCAUCUUUAGAGCAAGAGGAGCUUCAAGCAUUGCAGAUAGAGCAAGGAGAAAGCAGCCAAAAUGGCACAGUGCUUAUGGAAGAAACUGCUUAUCCAGCUUUGGAGGAAACCAGCUCAACAAUUGAGGCAGAGGAACAAAAGAUACCCGAAGACAGUAUCUAUAUUGGAACUGCCAGUGAUGAUUCUGAUAUUGUUACCCUUGAGCCACCUAAGUUAGAAGAAAUUGGAAAUCAAGAAGUUGUCAUUGUUGAAGAAGCACAGAGUUCAGAAGACUUUAACAUGGGCUCUUCCUCUAGCAGCCAGUAUACUUUCUGUCAGCCAGAAACUGUAUUUUCAUCUCAGCCUAGUGACGAUGAAUCAAGUAGUGAUGAAACCAGUAAUCAGCCCAGUCCUGCCU2000000009UUAGACGACGCCGUGCUAGGAAGAAGACCGUUUCUGCUUCAGAAUCUGAAG2000000006ACCGGCUAGUUGCUGAACAAGAAACUGAACCUUCUAAGGAGUUGAGUAAACGUCAGUUCAGUAGUGGUCUCAAUAAGUGUGUUAUACUUGCUUUGGUGAUUGCAAUCAGCAUGGGAUUUGGCCAUUUCUAUGGCACAAUUCAGAUUCAGAAGCGUCAACAGUUAGUCAGAAAGAUACAUGAAGAUGAAUUGAAUGAUAUGAAGGAUUAUCUUUCCCAGUGUCAACAGGAACAAGAAUCUUUUAUAGAUUAUAAGUCAUUGAAAGAAAAUCUUGCAAGGUGUUGGACACUUACUGAAGCAGAGAAGAUGUCCUUUGAAACUCAGAAAACGAACCUUGCUAC2000000006AGAAAAUCAGUAUUUAAGAAAGCUCUUCACUG2000000006ACUUUGUUAAUGAUGUUAAAGAUUAUCUUAGAAACAUGAAGGAAUAUGAAGUAGAUAAUGAUGGAGUAUUUGAGAAGUUGGAUGAAUAUAUAUAUAG2000000006ACACUUCUUUGGUCACACUUUUUCCCCUCCAUAUGG2000000006ACCCAGUCGACCUGAUAAAAAGCAACGUAUGGUAAAUAUUGAAAACUCCAGGCAUCGAAAACAAGAGCAGAAGCACCUUCAGCCACAGCCUUAUAAAAGGGAAGGUAAAUGGCAUAAAUAUGGUCGCACUAAUGGAAGACAAAUGGCAAAUCUUGAAAUAGAAUUGGGGCAAUUACCUUUUGAUCCUCAAUACUGAUUCACAAUUGAGUUAAAUUAGACAACUGUAAGAGAAAAAUUUAUGCUUUGUAUAAUGUUUGGUAUUGAAACUAAUGAAAUUACCAAGAUGACAAUGUCUUUUCUUUUGUUUCUAAGUAUCAGUUUGAUAACUUUAUAUUAUUCCUCAGAAGCAUUAGUUAAAAGUCUACUAACCUGCAUUUUCCUGUAGUUUAGCUUCGUUGAAUUUUUUUUGACACUGGAAAUGUUCAACUGUAGUUUUAUUAAGGAAGCCAGGCAUGCAACAGAUUUUGUGCAUGAAAUGAGACUUCCUUUCAGUGUAAGAGCUUAAAGCAAGCUCAGUCAUACAUGACAAAGUGUAAUUAACACUGAUGUUUGUGUUAAAUUUGCAGCAGAGCUUGAGAAAAGUACAUUGUUCUGGAAUUUCAUCAUUAACAUUUUAUAAUCUUACACUCACUUCUUGUCUUUUUGUGGGUUCAAGAGCCCUCUGACUUGUGAAGAAUUUGCUGCCCUCUUAAGAGCUUGCUGACUUGUUUUCUUGUGAAAUUUUUUGCACAUCUGAAUAUCGUGGAAGAAACAAUAAAACUACACCAUGAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 619 670 1010 1042 1139 1175
Modification Positions Y m6A m6A m6A m6A m6A
Genomic Coordinates 15:55371975:- 15:55371924:- 15:55360858:- 15:55359677:- 15:55359580:- 15:55359544:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
BtsJQJ3DteUq
bXBqJigD9oV3
3kRDPWwiRCgi
L6w2k2VEv4EY
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
93arJtwJmuS9
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
ArijeGVTwYBw
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP