General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000330334
Gene ID:	ENSG00000184508
Gene Name:	HDDC3
Sequence (UNICHARACTER ENCODING)	CGCGCGAUGGGCUCUGAGGCGGCGCAGCUGCUGGAGGCUGCCGACUUCGCGGCUCGCAAGCACCGGCAGCAGCGGCGGAAGGACCCCGAGGGGACCCCCUACAUCAACCACCCCAUCGGUGUGGCACGGAUCCUGACCCACGAGGCGGGAAUCACUGACAUUGUGGUGUUACAGGCGGCCCUGCUCCAUGACACGGUGGAGGACACAGACACCACCCUGGAUGAGGUGGAGCUACACUUUGGGGCACAAGUGCGGCGCCUGGUGGAGGAGGUAACAGAUGACAAGACUCUGCCCAAGCUGGAGAGAAAGAGGCUGCAGGUGGAGCAAGCGCCCCACAGUAGCCCCGGGGCCAAACUGGUGAAGCUGGCAGACAAGCUGUACAAUCUGAGGGACCUGAAUCGCUGCACCCCAGAGGUAAAAAUACAAUAGCUGGGCCAAGGGGAAGUUUUCAGGЖCAGCUCAUUCCAUCAGGAЖCUCAUGGCCUUGAACCAAGCUUGCCAGGAAGUGGGGAAAAGGCAGUGCUUUCCUUGACAUCACGCUAGCAAGUUUCUGUCGACUCUUAUGCAGGAUGGUCAGAACAUCGAGUCCAGGAAUACUUCGAGUGGGCAGCGCAGGUGGUGAAGGGGCUUCAGGGAACAAACCGGCAACUGGAAGAGGCUCUAAAGCAUCUGUUCAAGCAGCGGGGGCUGACAAUCUGAUCAGUGCUUGAAGCUAUCCAGAGGCACAACUCCAGCCUCGUUCAGGCCGGЖCAGGAUUCAUACGCCAUCUUUUCUGUGUCUCCUGAGCUCCCUCCAPCCUUCCCAGAUAUUAGAGGCCAAAAAAAGЖCUUGCAUUUUUUCUCAGUCUGAAGGUCUCCUGCUAACUAAGCUGAGCCCCGCGUGGUGGGAAUCAGAUGUACCCAPCCAUUUCUGЖUGCACUCACCGCCUCUCCCCAAGUCUUGGGUCUGUUUGCUAUUUUGCAUGGUGGGAUCUCUGGCCCCUCAGGGЖCUUGAGAUUAUUUAAGUACUAGUUCCUAЖCACGUUCUGGAAAAUAAAAAUAЖCUCUGGGUUAA
Sequence (SHORT NAMES ENCODING)	CGCGCGAUGGGCUCUGAGGCGGCGCAGCUGCUGGAGGCUGCCGACUUCGCGGCUCGCAAGCACCGGCAGCAGCGGCGGAAGGACCCCGAGGGGACCCCCUACAUCAACCACCCCAUCGGUGUGGCACGGAUCCUGACCCACGAGGCGGGAAUCACUGACAUUGUGGUGUUACAGGCGGCCCUGCUCCAUGACACGGUGGAGGACACAGACACCACCCUGGAUGAGGUGGAGCUACACUUUGGGGCACAAGUGCGGCGCCUGGUGGAGGAGGUAACAGAUGACAAGACUCUGCCCAAGCUGGAGAGAAAGAGGCUGCAGGUGGAGCAAGCGCCCCACAGUAGCCCCGGGGCCAAACUGGUGAAGCUGGCAGACAAGCUGUACAAUCUGAGGGACCUGAAUCGCUGCACCCCAGAGGUAAAAAUACAAUAGCUGGGCCAAGGGGAAGUUUUCAGGm6ACAGCUCAUUCCAUCAGGAm6ACUCAUGGCCUUGAACCAAGCUUGCCAGGAAGUGGGGAAAAGGCAGUGCUUUCCUUGACAUCACGCUAGCAAGUUUCUGUCGACUCUUAUGCAGGAUGGUCAGAACAUCGAGUCCAGGAAUACUUCGAGUGGGCAGCGCAGGUGGUGAAGGGGCUUCAGGGAACAAACCGGCAACUGGAAGAGGCUCUAAAGCAUCUGUUCAAGCAGCGGGGGCUGACAAUCUGAUCAGUGCUUGAAGCUAUCCAGAGGCACAACUCCAGCCUCGUUCAGGCCGGm6ACAGGAUUCAUACGCCAUCUUUUCUGUGUCUCCUGAGCUCCCUCCAYCCUUCCCAGAUAUUAGAGGCCAAAAAAAGm6ACUUGCAUUUUUUCUCAGUCUGAAGGUCUCCUGCUAACUAAGCUGAGCCCCGCGUGGUGGGAAUCAGAUGUACCCAYCCAUUUCUGm6AUGCACUCACCGCCUCUCCCCAAGUCUUGGGUCUGUUUGCUAUUUUGCAUGGUGGGAUCUCUGGCCCCUCAGGGm6ACUUGAGAUUAUUUAAGUACUAGUUCCUAm6ACACGUUCUGGAAAAUAAAAAUAm6ACUCUGGGUUAA
Sequence (MODOMICS CODE ENCODING)	CGCGCGAUGGGCUCUGAGGCGGCGCAGCUGCUGGAGGCUGCCGACUUCGCGGCUCGCAAGCACCGGCAGCAGCGGCGGAAGGACCCCGAGGGGACCCCCUACAUCAACCACCCCAUCGGUGUGGCACGGAUCCUGACCCACGAGGCGGGAAUCACUGACAUUGUGGUGUUACAGGCGGCCCUGCUCCAUGACACGGUGGAGGACACAGACACCACCCUGGAUGAGGUGGAGCUACACUUUGGGGCACAAGUGCGGCGCCUGGUGGAGGAGGUAACAGAUGACAAGACUCUGCCCAAGCUGGAGAGAAAGAGGCUGCAGGUGGAGCAAGCGCCCCACAGUAGCCCCGGGGCCAAACUGGUGAAGCUGGCAGACAAGCUGUACAAUCUGAGGGACCUGAAUCGCUGCACCCCAGAGGUAAAAAUACAAUAGCUGGGCCAAGGGGAAGUUUUCAGG2000000006ACAGCUCAUUCCAUCAGGA2000000006ACUCAUGGCCUUGAACCAAGCUUGCCAGGAAGUGGGGAAAAGGCAGUGCUUUCCUUGACAUCACGCUAGCAAGUUUCUGUCGACUCUUAUGCAGGAUGGUCAGAACAUCGAGUCCAGGAAUACUUCGAGUGGGCAGCGCAGGUGGUGAAGGGGCUUCAGGGAACAAACCGGCAACUGGAAGAGGCUCUAAAGCAUCUGUUCAAGCAGCGGGGGCUGACAAUCUGAUCAGUGCUUGAAGCUAUCCAGAGGCACAACUCCAGCCUCGUUCAGGCCGG2000000006ACAGGAUUCAUACGCCAUCUUUUCUGUGUCUCCUGAGCUCCCUCCA2000000009UCCUUCCCAGAUAUUAGAGGCCAAAAAAAG2000000006ACUUGCAUUUUUUCUCAGUCUGAAGGUCUCCUGCUAACUAAGCUGAGCCCCGCGUGGUGGGAAUCAGAUGUACCCA2000000009UCCAUUUCUG2000000006AUGCACUCACCGCCUCUCCCCAAGUCUUGGGUCUGUUUGCUAUUUUGCAUGGUGGGAUCUCUGGCCCCUCAGGG2000000006ACUUGAGAUUAUUUAAGUACUAGUUCCUA2000000006ACACGUUCUGGAAAAUAAAAAUA2000000006ACUCUGGGUUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	454	473	748	794	824	900	910	984	1013	1036
Modification Positions	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	15:90931518:-	15:90931499:-	15:90931224:-	15:90931178:-	15:90931148:-	15:90931072:-	15:90931062:-	15:90930988:-	15:90930959:-	15:90930936:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6AyXsheySjfx Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8