Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000534014
Gene ID: ENSG00000131871
Gene Name: SELENOS
Sequence (UNICHARACTER ENCODING) CGGCGGCAGGGCUGGGCGGCGGCGGCGGCGGCGGUCAUGGAACGCCAAGAGGAGUCUCUGUCCGCGCGGCCGGCCCUGGAGACCGAGGGGCUGCGCUUCCUGCACACCACGGUGGGCUCCCUGCUGGCCACCUAUGGCUGGUACAUCGUCUUCЖGCUGCAPCCUUCUCUACGUGGUCUUUCAGAAGCUUUCCGCCCGGCUAAGAGCCUUGAGGCAGAGGCAGCUGGACCGAGCUGCGGCUGCUGUGGGUUAGUGCCUGAUAACCGAAAUGAAAGCGGUGGUUUUGCACCUCCUUUAUAUUAAGAGUUAGUCUCUUAGUAAAAGUAAGAGGGGCCACACAGGAAGACCCUGUCUCU
Sequence (SHORT NAMES ENCODING) CGGCGGCAGGGCUGGGCGGCGGCGGCGGCGGCGGUCAUGGAACGCCAAGAGGAGUCUCUGUCCGCGCGGCCGGCCCUGGAGACCGAGGGGCUGCGCUUCCUGCACACCACGGUGGGCUCCCUGCUGGCCACCUAUGGCUGGUACAUCGUCUUCm6AGCUGCAYCCUUCUCUACGUGGUCUUUCAGAAGCUUUCCGCCCGGCUAAGAGCCUUGAGGCAGAGGCAGCUGGACCGAGCUGCGGCUGCUGUGGGUUAGUGCCUGAUAACCGAAAUGAAAGCGGUGGUUUUGCACCUCCUUUAUAUUAAGAGUUAGUCUCUUAGUAAAAGUAAGAGGGGCCACACAGGAAGACCCUGUCUCU
Sequence (MODOMICS CODE ENCODING) CGGCGGCAGGGCUGGGCGGCGGCGGCGGCGGCGGUCAUGGAACGCCAAGAGGAGUCUCUGUCCGCGCGGCCGGCCCUGGAGACCGAGGGGCUGCGCUUCCUGCACACCACGGUGGGCUCCCUGCUGGCCACCUAUGGCUGGUACAUCGUCUUC2000000006AGCUGCA2000000009UCCUUCUCUACGUGGUCUUUCAGAAGCUUUCCGCCCGGCUAAGAGCCUUGAGGCAGAGGCAGCUGGACCGAGCUGCGGCUGCUGUGGGUUAGUGCCUGAUAACCGAAAUGAAAGCGGUGGUUUUGCACCUCCUUUAUAUUAAGAGUUAGUCUCUUAGUAAAAGUAAGAGGGGCCACACAGGAAGACCCUGUCUCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 154 161
Modification Positions m6A Y
Genomic Coordinates 15:101276634:- 15:101276627:-
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8