General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000559152
Gene ID:	ENSG00000166855
Gene Name:	CLPX
Sequence (UNICHARACTER ENCODING)	GAUUCACGCCGCUGUGACCCGGAGGUCCUCAGGGGGCGAAGCCCCGGCCUAGGCCUCGCGGAGAUGCCCAGCUGCGGUGCUUGUACUUGCGGCGCGGCGGCCGUCCGGCUCAUCACCPCCUCACUCGCCUCCGCGCAGAGAGGUAUUUCUGGUGGUCGCAUUCAUAUGUCAGUUUUAGGAAGGCUUGGGACAUUUGAAACUCAGAUUCUGCAAAGAGCUCCUCUUAGAUCCUPUACAGAAЖCACCAGCAUACUUUGCCUCAAAAGAUGGGAUAAGUAAAGAUGGUUCUGGAGAUGGAAAUAAGAAAUCAGCAAGUGAGGGAAGUAGUAAGAAAUCAGGCUCUGGGAAUUCUGGGAAAGGUGGAAACCAGCUGCGCUGUCCUAAAUGUGGCGACUUGUGCACACAUGUAGAGACCUUUGUAUCAPCCACCCGUUUUGUCAAGUGUGAAAAGUGUCAUCAUUUUUUUGUUGUGCUAUCUGAAGCAGACUCAAAGAAAAGCAUAAUUAAAGAACCUGAAUCAGCAGCAGAAGCUGUAAAAUUGGCAUUCCAACAGAAACCACCACCUCCCCCUAAGAAGAUUUAUAЖCUACCUCGACAAGUAUGUUGUUGGCCAGUCAUUUGCUAAGAAGGUGCUUUCAGUUGCUGUGUACAAUCAUUAUAAGAGAAUAUAUAAUAAUAUCCCAGCUAAUCUGAGACAGCAAGCAGAGGUUGAGAAGCAGACAUCAUUAЖCACCAAGAGAGUUAGAAAUAAGAAGACGGGAGGAUGAGUACAGAUUUACAAAAUUGCUUCAGAUUGCUGGAAUUAGCCCACAUGGUAAUGCUPUAGGAGCAUCAAUGCAGCAACAGGUAAAACUCUGCUGGCACAAACCCUAGCUAAAUGCCUUGAUGUCCCUUUUGCUAUCUGUGACUGUACAACUUUGACUCAGGCUGGAUAUGUAGGCGAAGAUAUUGAAUCUGUGAUUGCAAAACUACUCCAAGAUGCCAAUUAUAAUGUGGAAAAAGCACAACAAGGAAUUGUCUUUCUGGAUGAAGUAGAUAAGAUUGGCAGUGUGCCAGGCAUUCAUCAAUUACGGGAUGUAGGUGGAGAAGGCGUUCAGCAAGUAAGCAGUUGAGUAUUUUGUUCAAGCCCACUAAAAGGAAGGGAAUACAUCAACCUCCCAAAUAUUGGCUUAUUAAAACUACUAGAAGGCACAAUAGUCAAUGUUCCAGAAAAGAAUUCCCGAAAGCUCCGUGGAGAAACAGUUCAAGUUGAUACAACAAACAPCCUGUUUGUGGCAUCUGGUGCUUUCAAUGGUUUAGACAGAAUCAUCAGCAGGAGGAAAAAUGAAAAGUAUCUUGGAUUUGGAACACCAUCUAAUCUGGGAAAAGGCAGAAGGGCUGCAGCUGCUGCAGACCUUGCUAAUCGAAGUGGGGAAUCGAAUACUCACCAAGACAUUGAAGAAAAAGAUCGGUUAUUGCGUCAUGUGGAAGCCAGAGAUCUGAUUGAGUUUGGCAUGAUUCCUGAGUUUGUGGGACGGUUGCCUGUGGUGGUUCCAUUGCAUAGCCUAGAUGAGAAAACACUUGUACAAAUAUUAACUGAGCCACGAAAUGCUGUUAUUCCUCAGUACCAGGCCUUAUUCAGCAUGGAUAAGUGUGAACUGAAUGUUACUGAGGAUGCUUUGAAAGCUAUAGCCAGAUUGGCACUAGAACGAAAAACAGGUGCACGAGGCCUUCGGUCCAUAAUGGAAAAGCUGUUACUAGAЖCCAAUGUUUGAAGUCCCUAAUUCUGAUAUCGUAUGUGUGGAGGUUGACAAAGAAGUAGUAGAAGGAAAAAAGGAACCAGGAUACAPCCGGGCUCCAACAAAAGAAUCCUCUGAAGAGGAGUAUGACUCUGGAGUUGAAGAAGAAGGAUGGCCCCGCCAAGCAGAUGCUGCAAACAGCUAAЖCUGUCAUAUUGCUGUCUUGUAUAUACAGCUUUUCCUUCUUUUGUUUAGGAUCAUAAUUGUCUCUACAGUCUGAUAUUAAAGGCAUUGGAUCUAUCUUGGAUAUCAUACAUGGUCAGAGAAGCCUPUAGGAGAAGAAUCAGAUCAUGUAUAUAAUUGUAЖCAUCACAUUGAUUUUACGGAAGAUGUUAUAUGGЖCUPUAAUGACACAAUGUUUAGAGAUAAAAUGUACAUUAUUUUGGUUCAGUUUUUUAAAAAAAAUAUGCUPUAACAAAAUUCUUAGGAAUUCUUUUAAGCAAUGCAGGUAUUGCGA
Sequence (SHORT NAMES ENCODING)	GAUUCACGCCGCUGUGACCCGGAGGUCCUCAGGGGGCGAAGCCCCGGCCUAGGCCUCGCGGAGAUGCCCAGCUGCGGUGCUUGUACUUGCGGCGCGGCGGCCGUCCGGCUCAUCACCYCCUCACUCGCCUCCGCGCAGAGAGGUAUUUCUGGUGGUCGCAUUCAUAUGUCAGUUUUAGGAAGGCUUGGGACAUUUGAAACUCAGAUUCUGCAAAGAGCUCCUCUUAGAUCCUYUACAGAAm6ACACCAGCAUACUUUGCCUCAAAAGAUGGGAUAAGUAAAGAUGGUUCUGGAGAUGGAAAUAAGAAAUCAGCAAGUGAGGGAAGUAGUAAGAAAUCAGGCUCUGGGAAUUCUGGGAAAGGUGGAAACCAGCUGCGCUGUCCUAAAUGUGGCGACUUGUGCACACAUGUAGAGACCUUUGUAUCAYCCACCCGUUUUGUCAAGUGUGAAAAGUGUCAUCAUUUUUUUGUUGUGCUAUCUGAAGCAGACUCAAAGAAAAGCAUAAUUAAAGAACCUGAAUCAGCAGCAGAAGCUGUAAAAUUGGCAUUCCAACAGAAACCACCACCUCCCCCUAAGAAGAUUUAUAm6ACUACCUCGACAAGUAUGUUGUUGGCCAGUCAUUUGCUAAGAAGGUGCUUUCAGUUGCUGUGUACAAUCAUUAUAAGAGAAUAUAUAAUAAUAUCCCAGCUAAUCUGAGACAGCAAGCAGAGGUUGAGAAGCAGACAUCAUUAm6ACACCAAGAGAGUUAGAAAUAAGAAGACGGGAGGAUGAGUACAGAUUUACAAAAUUGCUUCAGAUUGCUGGAAUUAGCCCACAUGGUAAUGCUYUAGGAGCAUCAAUGCAGCAACAGGUAAAACUCUGCUGGCACAAACCCUAGCUAAAUGCCUUGAUGUCCCUUUUGCUAUCUGUGACUGUACAACUUUGACUCAGGCUGGAUAUGUAGGCGAAGAUAUUGAAUCUGUGAUUGCAAAACUACUCCAAGAUGCCAAUUAUAAUGUGGAAAAAGCACAACAAGGAAUUGUCUUUCUGGAUGAAGUAGAUAAGAUUGGCAGUGUGCCAGGCAUUCAUCAAUUACGGGAUGUAGGUGGAGAAGGCGUUCAGCAAGUAAGCAGUUGAGUAUUUUGUUCAAGCCCACUAAAAGGAAGGGAAUACAUCAACCUCCCAAAUAUUGGCUUAUUAAAACUACUAGAAGGCACAAUAGUCAAUGUUCCAGAAAAGAAUUCCCGAAAGCUCCGUGGAGAAACAGUUCAAGUUGAUACAACAAACAYCCUGUUUGUGGCAUCUGGUGCUUUCAAUGGUUUAGACAGAAUCAUCAGCAGGAGGAAAAAUGAAAAGUAUCUUGGAUUUGGAACACCAUCUAAUCUGGGAAAAGGCAGAAGGGCUGCAGCUGCUGCAGACCUUGCUAAUCGAAGUGGGGAAUCGAAUACUCACCAAGACAUUGAAGAAAAAGAUCGGUUAUUGCGUCAUGUGGAAGCCAGAGAUCUGAUUGAGUUUGGCAUGAUUCCUGAGUUUGUGGGACGGUUGCCUGUGGUGGUUCCAUUGCAUAGCCUAGAUGAGAAAACACUUGUACAAAUAUUAACUGAGCCACGAAAUGCUGUUAUUCCUCAGUACCAGGCCUUAUUCAGCAUGGAUAAGUGUGAACUGAAUGUUACUGAGGAUGCUUUGAAAGCUAUAGCCAGAUUGGCACUAGAACGAAAAACAGGUGCACGAGGCCUUCGGUCCAUAAUGGAAAAGCUGUUACUAGAm6ACCAAUGUUUGAAGUCCCUAAUUCUGAUAUCGUAUGUGUGGAGGUUGACAAAGAAGUAGUAGAAGGAAAAAAGGAACCAGGAUACAYCCGGGCUCCAACAAAAGAAUCCUCUGAAGAGGAGUAUGACUCUGGAGUUGAAGAAGAAGGAUGGCCCCGCCAAGCAGAUGCUGCAAACAGCUAAm6ACUGUCAUAUUGCUGUCUUGUAUAUACAGCUUUUCCUUCUUUUGUUUAGGAUCAUAAUUGUCUCUACAGUCUGAUAUUAAAGGCAUUGGAUCUAUCUUGGAUAUCAUACAUGGUCAGAGAAGCCUYUAGGAGAAGAAUCAGAUCAUGUAUAUAAUUGUAm6ACAUCACAUUGAUUUUACGGAAGAUGUUAUAUGGm6ACUYUAAUGACACAAUGUUUAGAGAUAAAAUGUACAUUAUUUUGGUUCAGUUUUUUAAAAAAAAUAUGCUYUAACAAAAUUCUUAGGAAUUCUUUUAAGCAAUGCAGGUAUUGCGA
Sequence (MODOMICS CODE ENCODING)	GAUUCACGCCGCUGUGACCCGGAGGUCCUCAGGGGGCGAAGCCCCGGCCUAGGCCUCGCGGAGAUGCCCAGCUGCGGUGCUUGUACUUGCGGCGCGGCGGCCGUCCGGCUCAUCACC2000000009UCCUCACUCGCCUCCGCGCAGAGAGGUAUUUCUGGUGGUCGCAUUCAUAUGUCAGUUUUAGGAAGGCUUGGGACAUUUGAAACUCAGAUUCUGCAAAGAGCUCCUCUUAGAUCCU2000000009UUACAGAA2000000006ACACCAGCAUACUUUGCCUCAAAAGAUGGGAUAAGUAAAGAUGGUUCUGGAGAUGGAAAUAAGAAAUCAGCAAGUGAGGGAAGUAGUAAGAAAUCAGGCUCUGGGAAUUCUGGGAAAGGUGGAAACCAGCUGCGCUGUCCUAAAUGUGGCGACUUGUGCACACAUGUAGAGACCUUUGUAUCA2000000009UCCACCCGUUUUGUCAAGUGUGAAAAGUGUCAUCAUUUUUUUGUUGUGCUAUCUGAAGCAGACUCAAAGAAAAGCAUAAUUAAAGAACCUGAAUCAGCAGCAGAAGCUGUAAAAUUGGCAUUCCAACAGAAACCACCACCUCCCCCUAAGAAGAUUUAUA2000000006ACUACCUCGACAAGUAUGUUGUUGGCCAGUCAUUUGCUAAGAAGGUGCUUUCAGUUGCUGUGUACAAUCAUUAUAAGAGAAUAUAUAAUAAUAUCCCAGCUAAUCUGAGACAGCAAGCAGAGGUUGAGAAGCAGACAUCAUUA2000000006ACACCAAGAGAGUUAGAAAUAAGAAGACGGGAGGAUGAGUACAGAUUUACAAAAUUGCUUCAGAUUGCUGGAAUUAGCCCACAUGGUAAUGCU2000000009UUAGGAGCAUCAAUGCAGCAACAGGUAAAACUCUGCUGGCACAAACCCUAGCUAAAUGCCUUGAUGUCCCUUUUGCUAUCUGUGACUGUACAACUUUGACUCAGGCUGGAUAUGUAGGCGAAGAUAUUGAAUCUGUGAUUGCAAAACUACUCCAAGAUGCCAAUUAUAAUGUGGAAAAAGCACAACAAGGAAUUGUCUUUCUGGAUGAAGUAGAUAAGAUUGGCAGUGUGCCAGGCAUUCAUCAAUUACGGGAUGUAGGUGGAGAAGGCGUUCAGCAAGUAAGCAGUUGAGUAUUUUGUUCAAGCCCACUAAAAGGAAGGGAAUACAUCAACCUCCCAAAUAUUGGCUUAUUAAAACUACUAGAAGGCACAAUAGUCAAUGUUCCAGAAAAGAAUUCCCGAAAGCUCCGUGGAGAAACAGUUCAAGUUGAUACAACAAACA2000000009UCCUGUUUGUGGCAUCUGGUGCUUUCAAUGGUUUAGACAGAAUCAUCAGCAGGAGGAAAAAUGAAAAGUAUCUUGGAUUUGGAACACCAUCUAAUCUGGGAAAAGGCAGAAGGGCUGCAGCUGCUGCAGACCUUGCUAAUCGAAGUGGGGAAUCGAAUACUCACCAAGACAUUGAAGAAAAAGAUCGGUUAUUGCGUCAUGUGGAAGCCAGAGAUCUGAUUGAGUUUGGCAUGAUUCCUGAGUUUGUGGGACGGUUGCCUGUGGUGGUUCCAUUGCAUAGCCUAGAUGAGAAAACACUUGUACAAAUAUUAACUGAGCCACGAAAUGCUGUUAUUCCUCAGUACCAGGCCUUAUUCAGCAUGGAUAAGUGUGAACUGAAUGUUACUGAGGAUGCUUUGAAAGCUAUAGCCAGAUUGGCACUAGAACGAAAAACAGGUGCACGAGGCCUUCGGUCCAUAAUGGAAAAGCUGUUACUAGA2000000006ACCAAUGUUUGAAGUCCCUAAUUCUGAUAUCGUAUGUGUGGAGGUUGACAAAGAAGUAGUAGAAGGAAAAAAGGAACCAGGAUACA2000000009UCCGGGCUCCAACAAAAGAAUCCUCUGAAGAGGAGUAUGACUCUGGAGUUGAAGAAGAAGGAUGGCCCCGCCAAGCAGAUGCUGCAAACAGCUAA2000000006ACUGUCAUAUUGCUGUCUUGUAUAUACAGCUUUUCCUUCUUUUGUUUAGGAUCAUAAUUGUCUCUACAGUCUGAUAUUAAAGGCAUUGGAUCUAUCUUGGAUAUCAUACAUGGUCAGAGAAGCCU2000000009UUAGGAGAAGAAUCAGAUCAUGUAUAUAAUUGUA2000000006ACAUCACAUUGAUUUUACGGAAGAUGUUAUAUGG2000000006ACU2000000009UUAAUGACACAAUGUUUAGAGAUAAAAUGUACAUUAUUUUGGUUCAGUUUUUUAAAAAAAAUAUGCU2000000009UUAACAAAAUUCUUAGGAAUUCUUUUAAGCAAUGCAGGUAUUGCGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	118	233	241	424	584	727	820	1261	1739	1825	1920	2045	2079	2113	2116	2183
Modification Positions	Y	Y	m6A	Y	m6A	m6A	Y	Y	m6A	Y	m6A	Y	m6A	m6A	Y	Y
Genomic Coordinates	15:65185099:-	15:65180114:-	15:65180106:-	15:65166783:-	15:65164181:-	15:65164038:-	15:65158710:-	15:65155759:-	15:65152519:-	15:65152433:-	15:65150822:-	15:65150697:-	15:65150663:-	15:65150629:-	15:65150626:-	15:65150559:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 dknfVe6BK8aP	bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8