Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000261893
Gene ID: ENSG00000103642
Gene Name: LACTB
Sequence (UNICHARACTER ENCODING) GCAGAGACGCCAUGUACCGGCUCAUGUCAGCAGUGACUGCCCGGGCUGCCGCCCCCGGGGGCUUGGCCUCAAGCUGCGGACGACGCGGGGUCCAUCAGCGCGCCGGGCUGCCGCCUCUCGGCCACGGCUGGGUCGGGGGCCUCGGGCUGGGGCUGGGGCUGGCGCUCGGGGUGAAGCUGGCAGGUGGGCUGAGGGGCGCGGCCCCGGCGCAGUCCCCCGCGGCCCCCGACCCUGAGGCGUCGCCUCUGGCCGAGCCGCCACAGGAGCAGUCCCUCGCCCCGUGGUCUCCGCAGACCCCGGCGCCGCCCUGCUCCAGGUGCUUCGCCAGAGCCAUCGAGAGCAGCCGCGACCUGCUGCACAGGAUCAAGGAUGAGGUGGGCGCACCGGGCAUAGUGGUUGGAGUUUCUGUAGAUGGAAAAGAAGUCUGGUCAGAAGGUUUAGGUUAUGCUGAUGUUGAGAACCGUGUACCAUGUAAACCAGAGACAGUUAUGCGAAUUGCUAGCAUCAGCAAAAGUCUCACCAUGGUUGCUCUUGCCAAAUUGUGGGAAGCAGGGAAACUGGAUCUUGAUAUUCCAGUACAACAUUAUGUUCCCGAAUUCCCAGAAAAAGAAUAUGAAGGUGAAAAGGUUUCUGUCACAACAAGAUUACUGAUUUCCCAUUUAAGUGGAAUUCGUCAUUAUGAAAAGGACAUAAAAAAGGUGAAAGAAGAGAAAGCUUAUAAAGCCUUGAAGAUGAUGAAAGAGAAUGUUGCAUUUGAGCAAGAAAAAGAAGGCAAAAGUAAUGAAAAGAAUGAUUUUACUAAAUUUAAAACAGAGCAGGAGAAUGAAGCCAAAUGCCGGAAUUCAAAACCUGGCAAGAAAAAGAAUGAUUUUGAACAAGGCGAAUUAUAUUUGAGAGAAAAGUUUGAAAAUUCAAUUGAAUCCCUAAGAUUAUUUAAAAAUGAUCCUUUGUUCUUCAAACCUGGUAGUCAGUUUUUGUAUUCAACUUUUGGCUAUACCCUACUGGCAGCCAUAGUAGAGAGAGCUUCAGGAUGUAAAUAUUUGGЖCUAUAUGCAGAAAAUAUUCCAUGACUUGGAUAUGCUGACGACUGUGCAGGAAGAAAACGAGCCAGUGAUUUACAAUAGAGCAAGAUUUUAUGUUUACAAUAAAAAGAAACGUCUUGUCAACACACCUUACGUGGAUAЖCUCCUAUAAAUGGGCUGGUGGUGGAUUUCUGUCUACAGUGGGUGACCUUCUGAAAUUUGGGAAUGCAAUGCUPUAUGGUUACCAAGUUGGGCUGUUUAAGAЖCUCAAAUGAAAAUCUUUUACCUGGAUACCUCAAACCAGAAACAAUGGUUAUGAUGUGGЖCCCCAGUCCCUAЖCACAGAGAUGUCUUGGGAUAAAGAGGGUAAAUAUGCAAUGGCGUGGGGUGUUGUGGAAAGGAAACAAACGUAUGGUUCGUGUAGAAAGCAACGGCAUUAUGCUUCACAUACUGGAGGGGCAGUGGGUGCCAGUAGUGUCCUGCUGGUCCUUCCUGAAGAЖCUGGAUACAGAGЖCUAUAAAUAACAAGGUUCCCCCAAGAGGAAUCAUUGUUUCUAUCAUAUGUAACAUGCAAUCUGUUGGCCUCAAUAGCACCGCUUUGAAGAUUGCCCUUGAAUUUGAUAAAGЖCAGAUCAGЖCUGAUAACCUUAЖCACCAUAGGUGCAAAAUGAGUUGUUCUGAGGUUUUUUUGAAACAUUAAAGUUCCAAAACAUGACAUUUUUAAGAAUAAAUUUGAAAUAGAGUAUAЖCUGAAUGCAGAGAAUUAUGUACCUCUAAUUGCUUAAUUUUGUAAUGGUCUUUUAUUGUAGAAUUGGUUCUPUAUACUCAGGGAAGUAAUUAUAUUGUUUUUACUUUUUGAAAAAAGUGUUAЖCUCUUGAAAUAAAAUAUUCUGAUAAAAUA
Sequence (SHORT NAMES ENCODING) GCAGAGACGCCAUGUACCGGCUCAUGUCAGCAGUGACUGCCCGGGCUGCCGCCCCCGGGGGCUUGGCCUCAAGCUGCGGACGACGCGGGGUCCAUCAGCGCGCCGGGCUGCCGCCUCUCGGCCACGGCUGGGUCGGGGGCCUCGGGCUGGGGCUGGGGCUGGCGCUCGGGGUGAAGCUGGCAGGUGGGCUGAGGGGCGCGGCCCCGGCGCAGUCCCCCGCGGCCCCCGACCCUGAGGCGUCGCCUCUGGCCGAGCCGCCACAGGAGCAGUCCCUCGCCCCGUGGUCUCCGCAGACCCCGGCGCCGCCCUGCUCCAGGUGCUUCGCCAGAGCCAUCGAGAGCAGCCGCGACCUGCUGCACAGGAUCAAGGAUGAGGUGGGCGCACCGGGCAUAGUGGUUGGAGUUUCUGUAGAUGGAAAAGAAGUCUGGUCAGAAGGUUUAGGUUAUGCUGAUGUUGAGAACCGUGUACCAUGUAAACCAGAGACAGUUAUGCGAAUUGCUAGCAUCAGCAAAAGUCUCACCAUGGUUGCUCUUGCCAAAUUGUGGGAAGCAGGGAAACUGGAUCUUGAUAUUCCAGUACAACAUUAUGUUCCCGAAUUCCCAGAAAAAGAAUAUGAAGGUGAAAAGGUUUCUGUCACAACAAGAUUACUGAUUUCCCAUUUAAGUGGAAUUCGUCAUUAUGAAAAGGACAUAAAAAAGGUGAAAGAAGAGAAAGCUUAUAAAGCCUUGAAGAUGAUGAAAGAGAAUGUUGCAUUUGAGCAAGAAAAAGAAGGCAAAAGUAAUGAAAAGAAUGAUUUUACUAAAUUUAAAACAGAGCAGGAGAAUGAAGCCAAAUGCCGGAAUUCAAAACCUGGCAAGAAAAAGAAUGAUUUUGAACAAGGCGAAUUAUAUUUGAGAGAAAAGUUUGAAAAUUCAAUUGAAUCCCUAAGAUUAUUUAAAAAUGAUCCUUUGUUCUUCAAACCUGGUAGUCAGUUUUUGUAUUCAACUUUUGGCUAUACCCUACUGGCAGCCAUAGUAGAGAGAGCUUCAGGAUGUAAAUAUUUGGm6ACUAUAUGCAGAAAAUAUUCCAUGACUUGGAUAUGCUGACGACUGUGCAGGAAGAAAACGAGCCAGUGAUUUACAAUAGAGCAAGAUUUUAUGUUUACAAUAAAAAGAAACGUCUUGUCAACACACCUUACGUGGAUAm6ACUCCUAUAAAUGGGCUGGUGGUGGAUUUCUGUCUACAGUGGGUGACCUUCUGAAAUUUGGGAAUGCAAUGCUYUAUGGUUACCAAGUUGGGCUGUUUAAGAm6ACUCAAAUGAAAAUCUUUUACCUGGAUACCUCAAACCAGAAACAAUGGUUAUGAUGUGGm6ACCCCAGUCCCUAm6ACACAGAGAUGUCUUGGGAUAAAGAGGGUAAAUAUGCAAUGGCGUGGGGUGUUGUGGAAAGGAAACAAACGUAUGGUUCGUGUAGAAAGCAACGGCAUUAUGCUUCACAUACUGGAGGGGCAGUGGGUGCCAGUAGUGUCCUGCUGGUCCUUCCUGAAGAm6ACUGGAUACAGAGm6ACUAUAAAUAACAAGGUUCCCCCAAGAGGAAUCAUUGUUUCUAUCAUAUGUAACAUGCAAUCUGUUGGCCUCAAUAGCACCGCUUUGAAGAUUGCCCUUGAAUUUGAUAAAGm6ACAGAUCAGm6ACUGAUAACCUUAm6ACACCAUAGGUGCAAAAUGAGUUGUUCUGAGGUUUUUUUGAAACAUUAAAGUUCCAAAACAUGACAUUUUUAAGAAUAAAUUUGAAAUAGAGUAUAm6ACUGAAUGCAGAGAAUUAUGUACCUCUAAUUGCUUAAUUUUGUAAUGGUCUUUUAUUGUAGAAUUGGUUCUYUAUACUCAGGGAAGUAAUUAUAUUGUUUUUACUUUUUGAAAAAAGUGUUAm6ACUCUUGAAAUAAAAUAUUCUGAUAAAAUA
Sequence (MODOMICS CODE ENCODING) GCAGAGACGCCAUGUACCGGCUCAUGUCAGCAGUGACUGCCCGGGCUGCCGCCCCCGGGGGCUUGGCCUCAAGCUGCGGACGACGCGGGGUCCAUCAGCGCGCCGGGCUGCCGCCUCUCGGCCACGGCUGGGUCGGGGGCCUCGGGCUGGGGCUGGGGCUGGCGCUCGGGGUGAAGCUGGCAGGUGGGCUGAGGGGCGCGGCCCCGGCGCAGUCCCCCGCGGCCCCCGACCCUGAGGCGUCGCCUCUGGCCGAGCCGCCACAGGAGCAGUCCCUCGCCCCGUGGUCUCCGCAGACCCCGGCGCCGCCCUGCUCCAGGUGCUUCGCCAGAGCCAUCGAGAGCAGCCGCGACCUGCUGCACAGGAUCAAGGAUGAGGUGGGCGCACCGGGCAUAGUGGUUGGAGUUUCUGUAGAUGGAAAAGAAGUCUGGUCAGAAGGUUUAGGUUAUGCUGAUGUUGAGAACCGUGUACCAUGUAAACCAGAGACAGUUAUGCGAAUUGCUAGCAUCAGCAAAAGUCUCACCAUGGUUGCUCUUGCCAAAUUGUGGGAAGCAGGGAAACUGGAUCUUGAUAUUCCAGUACAACAUUAUGUUCCCGAAUUCCCAGAAAAAGAAUAUGAAGGUGAAAAGGUUUCUGUCACAACAAGAUUACUGAUUUCCCAUUUAAGUGGAAUUCGUCAUUAUGAAAAGGACAUAAAAAAGGUGAAAGAAGAGAAAGCUUAUAAAGCCUUGAAGAUGAUGAAAGAGAAUGUUGCAUUUGAGCAAGAAAAAGAAGGCAAAAGUAAUGAAAAGAAUGAUUUUACUAAAUUUAAAACAGAGCAGGAGAAUGAAGCCAAAUGCCGGAAUUCAAAACCUGGCAAGAAAAAGAAUGAUUUUGAACAAGGCGAAUUAUAUUUGAGAGAAAAGUUUGAAAAUUCAAUUGAAUCCCUAAGAUUAUUUAAAAAUGAUCCUUUGUUCUUCAAACCUGGUAGUCAGUUUUUGUAUUCAACUUUUGGCUAUACCCUACUGGCAGCCAUAGUAGAGAGAGCUUCAGGAUGUAAAUAUUUGG2000000006ACUAUAUGCAGAAAAUAUUCCAUGACUUGGAUAUGCUGACGACUGUGCAGGAAGAAAACGAGCCAGUGAUUUACAAUAGAGCAAGAUUUUAUGUUUACAAUAAAAAGAAACGUCUUGUCAACACACCUUACGUGGAUA2000000006ACUCCUAUAAAUGGGCUGGUGGUGGAUUUCUGUCUACAGUGGGUGACCUUCUGAAAUUUGGGAAUGCAAUGCU2000000009UUAUGGUUACCAAGUUGGGCUGUUUAAGA2000000006ACUCAAAUGAAAAUCUUUUACCUGGAUACCUCAAACCAGAAACAAUGGUUAUGAUGUGG2000000006ACCCCAGUCCCUA2000000006ACACAGAGAUGUCUUGGGAUAAAGAGGGUAAAUAUGCAAUGGCGUGGGGUGUUGUGGAAAGGAAACAAACGUAUGGUUCGUGUAGAAAGCAACGGCAUUAUGCUUCACAUACUGGAGGGGCAGUGGGUGCCAGUAGUGUCCUGCUGGUCCUUCCUGAAGA2000000006ACUGGAUACAGAG2000000006ACUAUAAAUAACAAGGUUCCCCCAAGAGGAAUCAUUGUUUCUAUCAUAUGUAACAUGCAAUCUGUUGGCCUCAAUAGCACCGCUUUGAAGAUUGCCCUUGAAUUUGAUAAAG2000000006ACAGAUCAG2000000006ACUGAUAACCUUA2000000006ACACCAUAGGUGCAAAAUGAGUUGUUCUGAGGUUUUUUUGAAACAUUAAAGUUCCAAAACAUGACAUUUUUAAGAAUAAAUUUGAAAUAGAGUAUA2000000006ACUGAAUGCAGAGAAUUAUGUACCUCUAAUUGCUUAAUUUUGUAAUGGUCUUUUAUUGUAGAAUUGGUUCU2000000009UUAUACUCAGGGAAGUAAUUAUAUUGUUUUUACUUUUUGAAAAAAGUGUUA2000000006ACUCUUGAAAUAAAAUAUUCUGAUAAAAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1045 1183 1256 1285 1344 1357 1517 1530 1642 1651 1664 1760 1831 1882
Modification Positions m6A m6A Y m6A m6A m6A m6A m6A m6A m6A m6A m6A Y m6A
Genomic Coordinates 15:63129566:+ 15:63141333:+ 15:63141406:+ 15:63141435:+ 15:63141494:+ 15:63141507:+ 15:63141667:+ 15:63141680:+ 15:63141792:+ 15:63141801:+ 15:63141814:+ 15:63141910:+ 15:63141981:+ 15:63142032:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
ArijeGVTwYBw
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
BtsJQJ3DteUq
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BtsJQJ3DteUq
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dknfVe6BK8aP
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6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
VL7zkHvkfkoB
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KTLz8piFYdwC
Lny8GcCeVGc9
UKen6WEino9G
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3TeAZFYFxgvp
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Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
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Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
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dknfVe6BK8aP
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UN3tNpbCPHYf
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VL7zkHvkfkoB
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WdHxkJGRmFxn
WiQcrNTGZHPT
BsCW7emuRX7M
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
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dknfVe6BK8aP
f6YSioLdAWpr
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
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VL7zkHvkfkoB
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BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
ArijeGVTwYBw
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
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dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
JkWoGWVwjNda
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dknfVe6BK8aP
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JkWoGWVwjNda
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dknfVe6BK8aP
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JkWoGWVwjNda
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bXBqJigD9oV3
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JkWoGWVwjNda
Yfn77uLS5tv8