Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000553829
Gene ID: ENSG00000272888
Gene Name: CHASERR
Sequence (UNICHARACTER ENCODING) GCCGCCGCAGCGAAGAGGCCAUGUUGUGUGGUGUGUGGGGCGGGGGGAGGAGGAGGAGGGAGUAAAGCCUAGAGAGGAGACGGGAGAGAGACACCACЖCACACGGCACAAGAUGGCCGGAGAGGCAGCAGCACCCCGAGCUGUCAGGCGUUCCGCCGCGGCCGCGAGGCCCGCCGGCCGGCGGGGAGCUACGCCCGGACGGCCAGCAGGCCCGCGGGAGUGGGGCUGCCGCGGCUGAGGCGAGGCGGGCCGCGCGCGUCGGCGUCACAGCCCGCGGCAGAGGCGCCCAGGGCGGCCGGGCCCACGACGCCGAAAGCGCCGCUGCGGUUGCCGCCUCGGAGGCUCCCCCGGGCCCCGGCGGCUGGACCCGGCGCGGGCGGGAGGCUCGGGCGGGCGGUCCGGCCCGGGACUCGGGUUUGGGCGACCAGGAGGUGCCGGUGGCCGCGCUCGGACCC#GUUCUCCAACGGAGGAGCUUUUUAACCUCUUUCCGGUGAGGUGGGAACUCAUCUUCAUGAUCGAAUUUAAAAGAACAAUGGAACCCUGACUACGUUUCAACAAAAAUAAAACUUGUUUUUUUCCCUCCUAUUGGGUGUUGGCUUUUAЖCUCUUUCAAAGCCGAUUUUGAAACGGCUGCAGUGAUACAUGCGAAGGUACUUGCUGCUUAUUAAACCUUUAUGACGUUAAGGUUGUCUUUGAAAAAUGCAAGUUGGAGGAGUGCUUCUGGUAUUUCAGA
Sequence (SHORT NAMES ENCODING) GCCGCCGCAGCGAAGAGGCCAUGUUGUGUGGUGUGUGGGGCGGGGGGAGGAGGAGGAGGGAGUAAAGCCUAGAGAGGAGACGGGAGAGAGACACCACm6ACACACGGCACAAGAUGGCCGGAGAGGCAGCAGCACCCCGAGCUGUCAGGCGUUCCGCCGCGGCCGCGAGGCCCGCCGGCCGGCGGGGAGCUACGCCCGGACGGCCAGCAGGCCCGCGGGAGUGGGGCUGCCGCGGCUGAGGCGAGGCGGGCCGCGCGCGUCGGCGUCACAGCCCGCGGCAGAGGCGCCCAGGGCGGCCGGGCCCACGACGCCGAAAGCGCCGCUGCGGUUGCCGCCUCGGAGGCUCCCCCGGGCCCCGGCGGCUGGACCCGGCGCGGGCGGGAGGCUCGGGCGGGCGGUCCGGCCCGGGACUCGGGUUUGGGCGACCAGGAGGUGCCGGUGGCCGCGCUCGGACCCGmGUUCUCCAACGGAGGAGCUUUUUAACCUCUUUCCGGUGAGGUGGGAACUCAUCUUCAUGAUCGAAUUUAAAAGAACAAUGGAACCCUGACUACGUUUCAACAAAAAUAAAACUUGUUUUUUUCCCUCCUAUUGGGUGUUGGCUUUUAm6ACUCUUUCAAAGCCGAUUUUGAAACGGCUGCAGUGAUACAUGCGAAGGUACUUGCUGCUUAUUAAACCUUUAUGACGUUAAGGUUGUCUUUGAAAAAUGCAAGUUGGAGGAGUGCUUCUGGUAUUUCAGA
Sequence (MODOMICS CODE ENCODING) GCCGCCGCAGCGAAGAGGCCAUGUUGUGUGGUGUGUGGGGCGGGGGGAGGAGGAGGAGGGAGUAAAGCCUAGAGAGGAGACGGGAGAGAGACACCAC2000000006ACACACGGCACAAGAUGGCCGGAGAGGCAGCAGCACCCCGAGCUGUCAGGCGUUCCGCCGCGGCCGCGAGGCCCGCCGGCCGGCGGGGAGCUACGCCCGGACGGCCAGCAGGCCCGCGGGAGUGGGGCUGCCGCGGCUGAGGCGAGGCGGGCCGCGCGCGUCGGCGUCACAGCCCGCGGCAGAGGCGCCCAGGGCGGCCGGGCCCACGACGCCGAAAGCGCCGCUGCGGUUGCCGCCUCGGAGGCUCCCCCGGGCCCCGGCGGCUGGACCCGGCGCGGGCGGGAGGCUCGGGCGGGCGGUCCGGCCCGGGACUCGGGUUUGGGCGACCAGGAGGUGCCGGUGGCCGCGCUCGGACCC2000000090GGUUCUCCAACGGAGGAGCUUUUUAACCUCUUUCCGGUGAGGUGGGAACUCAUCUUCAUGAUCGAAUUUAAAAGAACAAUGGAACCCUGACUACGUUUCAACAAAAAUAAAACUUGUUUUUUUCCCUCCUAUUGGGUGUUGGCUUUUA2000000006ACUCUUUCAAAGCCGAUUUUGAAACGGCUGCAGUGAUACAUGCGAAGGUACUUGCUGCUUAUUAAACCUUUAUGACGUUAAGGUUGUCUUUGAAAAAUGCAAGUUGGAGGAGUGCUUCUGGUAUUUCAGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 98 455 603
Modification Positions m6A Gm m6A
Genomic Coordinates 15:92882829:+ 15:92883186:+ 15:92883732:+
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
jaSvBXBkn3xs
YkSG92k4EHDM
BtsJQJ3DteUq
Yfn77uLS5tv8