Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000564610
Gene ID: ENSG00000137817
Gene Name: PARP6
Sequence (UNICHARACTER ENCODING) GGAGAUCUACAGUGAGAACUCUGUAUCCAUCAGAGAAUAUGGAACUAUCGAUGACGUGGACAUUGACCUCCACAUCAACAUCAGCUUCCUCGAUGAGGAAGUCUCUACAGCCUGGAAGGUCCUCCGGACAGAACCUAUUGUGUUGAGGCUGCGAUUUUCUCUCUCCCAGUACCUAGAUGGACCAGAACCAUCCAUUGAGGUUUUCCAGCCAUCAAAUAAGGAAGGAUUUGGGCUGGGUCUUCAGUUGAAAAAGAUCCUGGGUAUGUUUACAPCCCAACAAUGGAAACAUCUGAGCAAUGAUUUCUUGAAGACCCAGCAGGAGAAGAGGCACAGUUGGUUCAAGGCAAGUGGUACCAUCAAGAAGUUCCGAGCUGGCCUCAGCAUCUUUUCACCCAPCCCCAAGUCUCCCAGUUUCCCUAUCAUACAGGACUCCAUGCUGAAAGGCAAACUAGGUGUACCAGAGCUUCGGGUUGGGCGCCUCAUGAACCGUUCCAUCUCCUGUACCAUGAAGAACCCCAAAGUGGAAGUGUUUGGCUACCCUCCCAGCCCCCAGGUCAGUGGUCACUGCAAGAACAUUCCCACUCUGGAGUAUGGAUUCCUCGUUCAGAUCAUGAAGUAUGCAGAACAGAGGAUUCCAACAUUGAAUGAGUACUGUGUGGUGUGUGAUGAGCAGCAUGUCUUCCAAAAUGGAUCUAUGCUGAAGCCAGCUGUCUGUACUCGUGAACUAUGCGUUUUCUCCUUCUACACACUGGGCGUCAUGUCUGGAGCUGCAGAGGAGGUGGCCACUGGAGCAGAGGUGGUGGAUCUGCUGGUGGCCAUGUGUAGGGCAGCUPUAGAGUCCCCUAGAAAGAGCAUCAUCUUUGAGCCUUAUCCCUCUGUGGUGGACCCCACUGAUCCCAAGACUCUGGCCUPUAACCCUAAGAAGAAGAAUUAUGAGCGGCUUCAGAAAGCUCUGGAUAGUGUGAUGUCUAUUCGGGAGAUGACCCAGGGCUCAUAUUUGGAAAUCAAGAAACAGAUGGACAAGUUGGAUCCCCUGGCCCAPCCUCUCCUGCAGUGGAUCAUCUCUAGCAACAGGUCACACAUUGUCAAЖCUACCUCUCAGCAGGCUGAAGUUCAUGCACACCUCACACCAGUUCCUCCUGCUGAGCAGCCCUCCUGCCAAGGAGGCUCGGUUCCGGACCGCCAAGAAGCUCUAUGGCAGCACCUUUGCCUUCCAPGGGUCCCACAUUGAGAACUGGCAUUCGAUCCUGCGCAAUGGGCUGGUCAAUGCAPCCUACACCAAACUGCAGGAAUGGGAAAAGGACAGCACAGGAUGCCCUCCAAGGAUGAGCUGGUCCAGAGAUACAACAGGAUGAAUACCAUCCCCCAGACCCGAUCCAUUCAGUCACGGUUCCUGCAGAGUCGGAAUCUAAACUGUAUAGCACUUUGUGAAGUGAUUACAUCUAAGGACCUCCAGAAGCAUGGGAACAUCUGGGUGUGCCCUGUGUCCGACCAUGUCUGCACAAGAUUCUUCUUUGUAUAUGAGGAUGGUCAGGUGGGCGAUGCCAACAUUAAUACUCAGGACCCCAAGAUACAGAAGGAAAUCAUGCGUGUGAUCGGAACUCAGGUUUACACAAACUGAGGGGGCCCCAGCCCUCGUACCACCCCUGUUACCCCAGGAUCCAUCUGCCCUCAUAAAAGUGUUCAGGUACAGCAGCUGAGGCUGCCCUGAGGAAUCAAGGGGCCAUUACCAAGGGGCAGGAAЖAGGAUAUGUAAGAGGUGGCCUUCAUGGUAGAGCUUGACCCAAGAACUACUCCACAUUCGGAUGGCCCAGACUGACUCCAUCCCCUGACUUUCCCUUUGACUUCACCCUGUUUGUAAAUAAAACAAUAAAAUGG
Sequence (SHORT NAMES ENCODING) GGAGAUCUACAGUGAGAACUCUGUAUCCAUCAGAGAAUAUGGAACUAUCGAUGACGUGGACAUUGACCUCCACAUCAACAUCAGCUUCCUCGAUGAGGAAGUCUCUACAGCCUGGAAGGUCCUCCGGACAGAACCUAUUGUGUUGAGGCUGCGAUUUUCUCUCUCCCAGUACCUAGAUGGACCAGAACCAUCCAUUGAGGUUUUCCAGCCAUCAAAUAAGGAAGGAUUUGGGCUGGGUCUUCAGUUGAAAAAGAUCCUGGGUAUGUUUACAYCCCAACAAUGGAAACAUCUGAGCAAUGAUUUCUUGAAGACCCAGCAGGAGAAGAGGCACAGUUGGUUCAAGGCAAGUGGUACCAUCAAGAAGUUCCGAGCUGGCCUCAGCAUCUUUUCACCCAYCCCCAAGUCUCCCAGUUUCCCUAUCAUACAGGACUCCAUGCUGAAAGGCAAACUAGGUGUACCAGAGCUUCGGGUUGGGCGCCUCAUGAACCGUUCCAUCUCCUGUACCAUGAAGAACCCCAAAGUGGAAGUGUUUGGCUACCCUCCCAGCCCCCAGGUCAGUGGUCACUGCAAGAACAUUCCCACUCUGGAGUAUGGAUUCCUCGUUCAGAUCAUGAAGUAUGCAGAACAGAGGAUUCCAACAUUGAAUGAGUACUGUGUGGUGUGUGAUGAGCAGCAUGUCUUCCAAAAUGGAUCUAUGCUGAAGCCAGCUGUCUGUACUCGUGAACUAUGCGUUUUCUCCUUCUACACACUGGGCGUCAUGUCUGGAGCUGCAGAGGAGGUGGCCACUGGAGCAGAGGUGGUGGAUCUGCUGGUGGCCAUGUGUAGGGCAGCUYUAGAGUCCCCUAGAAAGAGCAUCAUCUUUGAGCCUUAUCCCUCUGUGGUGGACCCCACUGAUCCCAAGACUCUGGCCUYUAACCCUAAGAAGAAGAAUUAUGAGCGGCUUCAGAAAGCUCUGGAUAGUGUGAUGUCUAUUCGGGAGAUGACCCAGGGCUCAUAUUUGGAAAUCAAGAAACAGAUGGACAAGUUGGAUCCCCUGGCCCAYCCUCUCCUGCAGUGGAUCAUCUCUAGCAACAGGUCACACAUUGUCAAm6ACUACCUCUCAGCAGGCUGAAGUUCAUGCACACCUCACACCAGUUCCUCCUGCUGAGCAGCCCUCCUGCCAAGGAGGCUCGGUUCCGGACCGCCAAGAAGCUCUAUGGCAGCACCUUUGCCUUCCAYGGGUCCCACAUUGAGAACUGGCAUUCGAUCCUGCGCAAUGGGCUGGUCAAUGCAYCCUACACCAAACUGCAGGAAUGGGAAAAGGACAGCACAGGAUGCCCUCCAAGGAUGAGCUGGUCCAGAGAUACAACAGGAUGAAUACCAUCCCCCAGACCCGAUCCAUUCAGUCACGGUUCCUGCAGAGUCGGAAUCUAAACUGUAUAGCACUUUGUGAAGUGAUUACAUCUAAGGACCUCCAGAAGCAUGGGAACAUCUGGGUGUGCCCUGUGUCCGACCAUGUCUGCACAAGAUUCUUCUUUGUAUAUGAGGAUGGUCAGGUGGGCGAUGCCAACAUUAAUACUCAGGACCCCAAGAUACAGAAGGAAAUCAUGCGUGUGAUCGGAACUCAGGUUUACACAAACUGAGGGGGCCCCAGCCCUCGUACCACCCCUGUUACCCCAGGAUCCAUCUGCCCUCAUAAAAGUGUUCAGGUACAGCAGCUGAGGCUGCCCUGAGGAAUCAAGGGGCCAUUACCAAGGGGCAGGAAm6AAGGAUAUGUAAGAGGUGGCCUUCAUGGUAGAGCUUGACCCAAGAACUACUCCACAUUCGGAUGGCCCAGACUGACUCCAUCCCCUGACUUUCCCUUUGACUUCACCCUGUUUGUAAAUAAAACAAUAAAAUGG
Sequence (MODOMICS CODE ENCODING) GGAGAUCUACAGUGAGAACUCUGUAUCCAUCAGAGAAUAUGGAACUAUCGAUGACGUGGACAUUGACCUCCACAUCAACAUCAGCUUCCUCGAUGAGGAAGUCUCUACAGCCUGGAAGGUCCUCCGGACAGAACCUAUUGUGUUGAGGCUGCGAUUUUCUCUCUCCCAGUACCUAGAUGGACCAGAACCAUCCAUUGAGGUUUUCCAGCCAUCAAAUAAGGAAGGAUUUGGGCUGGGUCUUCAGUUGAAAAAGAUCCUGGGUAUGUUUACA2000000009UCCCAACAAUGGAAACAUCUGAGCAAUGAUUUCUUGAAGACCCAGCAGGAGAAGAGGCACAGUUGGUUCAAGGCAAGUGGUACCAUCAAGAAGUUCCGAGCUGGCCUCAGCAUCUUUUCACCCA2000000009UCCCCAAGUCUCCCAGUUUCCCUAUCAUACAGGACUCCAUGCUGAAAGGCAAACUAGGUGUACCAGAGCUUCGGGUUGGGCGCCUCAUGAACCGUUCCAUCUCCUGUACCAUGAAGAACCCCAAAGUGGAAGUGUUUGGCUACCCUCCCAGCCCCCAGGUCAGUGGUCACUGCAAGAACAUUCCCACUCUGGAGUAUGGAUUCCUCGUUCAGAUCAUGAAGUAUGCAGAACAGAGGAUUCCAACAUUGAAUGAGUACUGUGUGGUGUGUGAUGAGCAGCAUGUCUUCCAAAAUGGAUCUAUGCUGAAGCCAGCUGUCUGUACUCGUGAACUAUGCGUUUUCUCCUUCUACACACUGGGCGUCAUGUCUGGAGCUGCAGAGGAGGUGGCCACUGGAGCAGAGGUGGUGGAUCUGCUGGUGGCCAUGUGUAGGGCAGCU2000000009UUAGAGUCCCCUAGAAAGAGCAUCAUCUUUGAGCCUUAUCCCUCUGUGGUGGACCCCACUGAUCCCAAGACUCUGGCCU2000000009UUAACCCUAAGAAGAAGAAUUAUGAGCGGCUUCAGAAAGCUCUGGAUAGUGUGAUGUCUAUUCGGGAGAUGACCCAGGGCUCAUAUUUGGAAAUCAAGAAACAGAUGGACAAGUUGGAUCCCCUGGCCCA2000000009UCCUCUCCUGCAGUGGAUCAUCUCUAGCAACAGGUCACACAUUGUCAA2000000006ACUACCUCUCAGCAGGCUGAAGUUCAUGCACACCUCACACCAGUUCCUCCUGCUGAGCAGCCCUCCUGCCAAGGAGGCUCGGUUCCGGACCGCCAAGAAGCUCUAUGGCAGCACCUUUGCCUUCCA2000000009UGGGUCCCACAUUGAGAACUGGCAUUCGAUCCUGCGCAAUGGGCUGGUCAAUGCA2000000009UCCUACACCAAACUGCAGGAAUGGGAAAAGGACAGCACAGGAUGCCCUCCAAGGAUGAGCUGGUCCAGAGAUACAACAGGAUGAAUACCAUCCCCCAGACCCGAUCCAUUCAGUCACGGUUCCUGCAGAGUCGGAAUCUAAACUGUAUAGCACUUUGUGAAGUGAUUACAUCUAAGGACCUCCAGAAGCAUGGGAACAUCUGGGUGUGCCCUGUGUCCGACCAUGUCUGCACAAGAUUCUUCUUUGUAUAUGAGGAUGGUCAGGUGGGCGAUGCCAACAUUAAUACUCAGGACCCCAAGAUACAGAAGGAAAUCAUGCGUGUGAUCGGAACUCAGGUUUACACAAACUGAGGGGGCCCCAGCCCUCGUACCACCCCUGUUACCCCAGGAUCCAUCUGCCCUCAUAAAAGUGUUCAGGUACAGCAGCUGAGGCUGCCCUGAGGAAUCAAGGGGCCAUUACCAAGGGGCAGGAA2000000006AAGGAUAUGUAAGAGGUGGCCUUCAUGGUAGAGCUUGACCCAAGAACUACUCCACAUUCGGAUGGCCCAGACUGACUCCAUCCCCUGACUUUCCCUUUGACUUCACCCUGUUUGUAAAUAAAACAAUAAAAUGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 272 396 833 912 1042 1090 1216 1271 1743
Modification Positions Y Y Y Y Y m6A Y Y m6A
Genomic Coordinates 15:72261688:- 15:72261564:- 15:72256554:- 15:72256475:- 15:72253451:- 15:72251222:- 15:72250092:- 15:72250037:- 15:72241332:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
Yfn77uLS5tv8
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
834aFpha8RvT
ksEP666umrV9
ZuM5xpZmNuDL