General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000409796
Gene ID:	ENSG00000183060
Gene Name:	LYSMD4
Sequence (UNICHARACTER ENCODING)	GGGGCCUGGACGAGGGGGCCGCGGUCUGGCUAGGGAGCCGCGCGGGCUCAUGGCGUGAAGAAAAUGAGGCACGAGGAAUUGUUAACCAAGACCUUCCAAGGCCCAGCUGUUGUGUGUGGGACUCCGACCAGCCACGUAUACAUGUUUAAGAAUGGCAGUGGGGACUCGGGGGACUCUUCUGAAGAAGAGUCUCACCGUGUGGUUUUGCGGCCCCGGGGCAAGGAGCGCCACAAGAGCGGUGUCCACCAGCCUCCCCAGGCGGGAGCAGGUGACGUGGUGCUGCUGCAGCGGGAGCUGGCCCAGGAGGACAGCCUCAACAAGCUGGCGCUGCAGUAUGGCUGCAAAGUUGCAGAUAUCAAGAAAGUCAACAACUUCAUCAGAGAACAAGACUUAUAUGCUUUGAAAUCUGUUAAGAUUCCAGUGAGAAACCAUGGGAUCCUGAUGGAGACCCACAAAGAЖCUGAAACCCCUUCUGAGCCCGUCUUCCGAGACCACAGUGACCGUGGAACUGCCAGAGGCAGACAGAGCAGGCGCGGGCACCGGUGCCCAGGCCGGCCAACUGAUGGGCUUCUUUAAGGGGAUUGACCAGGAUAUUGAGCGUGCAGUGCAGUCAGAAAUCUUUCUACAUGAAAGUUACUGCAUGGЖCACCUCCCAUCAGCCACUGCUCCCGGCACCUCCGAAGACGCCUAUGGAUGGUGCAGAUUGUGGCAUUCAGUGGUGGAAUGCUGUUUUCAUCAUGCUGCUGAUUGGUAUUGUCUUGCCUGUCUUUUAUUUGGUCUACUUUAAAAUACAAGCUAGUGGUGAGACCCCUAAUAGCUUGAACACAACUGUCAUCCCCAAUGGCUCGAUGGCAAUGGGUACAGUUCCAGGGCAAGCCCCCAGACUAGCAGUUGCAGUGCCAGCCGUCACUUCUGCAGACAGCCAGUUCAGUCAGACCACCCAAGCGGGGAGCUAAGCUUUGUUUUUAAAGЖCUAGGCCCAGCUUUAGCAAUUGGCUGUUGAUGUGCCUCAGCUGUCACUGGCGAUGUCCUAGGGGUGCUGCAUUUUGCUUCCGGGGAAGGAUGGЖCACUUUUCAGAAGUCACUGCAGUAUUCCCAAUUGCACUGGCCCUGGGCAUGGCCUUACCCAGUCUAAGCUGGCAGGAUCUAAAACAGCAGCGACCUCGGCCCCUAUCCAGAGAGGUGCAGCAAGAGAGCCAUUUCCCUGUGACAUUUAGUGGЖCUGGCCAGUUCAUAGCAGCACUGUGAGGACCCCCAAGUUGGACGUGCUCGGAGGGAAAGAUUUAUGGCCUCUGUCGAGGGACCUGCAGCGUGAGAGCCAGUGGCAUCUGCGCGGCUUGCCUGGCUCUUGCUGUAUCCUCACUUCCUGUGGAGCGGGGAUUGGCUCUGAGAAGGAGUGUUCUCUGUCUGCCUGGCAAAGGUGCUGUGGAAUAGGCUUGGCAUGCCACCCUGUUUUAGAGAGUGACAGUUACAGUUGUAACAAGCCUACUUCAUAUUGGCCCCCUCAGUUAGCCUUUUUGAGGCAAUGCCAUUUCUAGAGUUGAAAAAGCCCUGGACCCAAACUGCGGCACUGUUGAAUAAAGGGCAGUCCUACUCCUGUCCUUUUAGAGUGGCUUAGUGUGACACACAGGCAUCUCCCAGGCCAAGCACACACAGGCUGCGCCCAGUUCCGCAGGAGCCGUCCCACAGCGUGGCUCUCUGGAUUCUCCCACUUGUCCUCCUUGGAAGGAGCUCUUGCUGGCCAGUGUUUGGAGGGGAGGAUGAGUGCCUGUCACUGAGGCCUCACUAUGGUUGGCGUCUGAAGCUGGGCGGUCGUCAGGCCUGUGCUGAGAGCCGCAGCCCCUGUGCACACCUAACACAGGGCGCUCCCCCUGCUGCUUCCCUGGCUCAGUUCUUCGGAGCUCCAGAGUGAGAAGGCCGCUUCGUCCUUUUUCUCUGGGUGAUGCCCUUAGAAUAACACUAUAUGCAAUGUAACUCACAAUGUUCCAGGACCAAAGЖCUUGAUGGAGGGGCUAGAGGCGACCCUUGUUGUAAAAGGCGAUCAGAACACCUGAGGGAGGAAGGGGCUUGCAGUUUUCCCAGCCCUUCUCGCUGCCAAGGCAGCAGUGGUGCUGUGGAUGGGCUGGGGACUGCGGGACAGAGCCUGCUACUACUUGGGAGUUGGUGCUGCCCUGUGGCAUGGAGGGGUGGGAGGGGCUGAGAUGGCUGCUGGCCCGGCCUCCAAGAGUUCUGGACAGGAGGCAGACACUGCCCAGAUGCUCGGUGGAGGGACAGUGAUGGCCUUUGACUCAUGAGGCCUGGAGAAAAGUAUCAAAGGUCUCACCAUGUAAGAGUGAUUUCCGAUUUCUCUCCUUUCAGUUGUGUGAAAAAACAGCUGGCCUGGGUUCCAUUAGCAAAUUAAAUCAUCUUCAAUCUUAAAUUAGAAACCAGAAUGAUCUUCAGGAUAAAAAGAACUUCUGAAUCUCUGCAAUAGGAAAUGUUUCGAUCAUGCAAGUGCUUUCCCAGCCAAAUGUCUGUGCUCUCUGUGUCACUGAGGGCCACAGGUUCCUCUAACAUCUGUCACUGUCACUUCACCAGGCAGGCCUUGGAGUUCCAUGACAAAAUCACUUUUGUCAGACAAAGAAUGUAUCCUPUACUUUUCUCAAAUGGAAUAAAAUUAUUUCUUCUGUGGAGGAAAA
Sequence (SHORT NAMES ENCODING)	GGGGCCUGGACGAGGGGGCCGCGGUCUGGCUAGGGAGCCGCGCGGGCUCAUGGCGUGAAGAAAAUGAGGCACGAGGAAUUGUUAACCAAGACCUUCCAAGGCCCAGCUGUUGUGUGUGGGACUCCGACCAGCCACGUAUACAUGUUUAAGAAUGGCAGUGGGGACUCGGGGGACUCUUCUGAAGAAGAGUCUCACCGUGUGGUUUUGCGGCCCCGGGGCAAGGAGCGCCACAAGAGCGGUGUCCACCAGCCUCCCCAGGCGGGAGCAGGUGACGUGGUGCUGCUGCAGCGGGAGCUGGCCCAGGAGGACAGCCUCAACAAGCUGGCGCUGCAGUAUGGCUGCAAAGUUGCAGAUAUCAAGAAAGUCAACAACUUCAUCAGAGAACAAGACUUAUAUGCUUUGAAAUCUGUUAAGAUUCCAGUGAGAAACCAUGGGAUCCUGAUGGAGACCCACAAAGAm6ACUGAAACCCCUUCUGAGCCCGUCUUCCGAGACCACAGUGACCGUGGAACUGCCAGAGGCAGACAGAGCAGGCGCGGGCACCGGUGCCCAGGCCGGCCAACUGAUGGGCUUCUUUAAGGGGAUUGACCAGGAUAUUGAGCGUGCAGUGCAGUCAGAAAUCUUUCUACAUGAAAGUUACUGCAUGGm6ACACCUCCCAUCAGCCACUGCUCCCGGCACCUCCGAAGACGCCUAUGGAUGGUGCAGAUUGUGGCAUUCAGUGGUGGAAUGCUGUUUUCAUCAUGCUGCUGAUUGGUAUUGUCUUGCCUGUCUUUUAUUUGGUCUACUUUAAAAUACAAGCUAGUGGUGAGACCCCUAAUAGCUUGAACACAACUGUCAUCCCCAAUGGCUCGAUGGCAAUGGGUACAGUUCCAGGGCAAGCCCCCAGACUAGCAGUUGCAGUGCCAGCCGUCACUUCUGCAGACAGCCAGUUCAGUCAGACCACCCAAGCGGGGAGCUAAGCUUUGUUUUUAAAGm6ACUAGGCCCAGCUUUAGCAAUUGGCUGUUGAUGUGCCUCAGCUGUCACUGGCGAUGUCCUAGGGGUGCUGCAUUUUGCUUCCGGGGAAGGAUGGm6ACACUUUUCAGAAGUCACUGCAGUAUUCCCAAUUGCACUGGCCCUGGGCAUGGCCUUACCCAGUCUAAGCUGGCAGGAUCUAAAACAGCAGCGACCUCGGCCCCUAUCCAGAGAGGUGCAGCAAGAGAGCCAUUUCCCUGUGACAUUUAGUGGm6ACUGGCCAGUUCAUAGCAGCACUGUGAGGACCCCCAAGUUGGACGUGCUCGGAGGGAAAGAUUUAUGGCCUCUGUCGAGGGACCUGCAGCGUGAGAGCCAGUGGCAUCUGCGCGGCUUGCCUGGCUCUUGCUGUAUCCUCACUUCCUGUGGAGCGGGGAUUGGCUCUGAGAAGGAGUGUUCUCUGUCUGCCUGGCAAAGGUGCUGUGGAAUAGGCUUGGCAUGCCACCCUGUUUUAGAGAGUGACAGUUACAGUUGUAACAAGCCUACUUCAUAUUGGCCCCCUCAGUUAGCCUUUUUGAGGCAAUGCCAUUUCUAGAGUUGAAAAAGCCCUGGACCCAAACUGCGGCACUGUUGAAUAAAGGGCAGUCCUACUCCUGUCCUUUUAGAGUGGCUUAGUGUGACACACAGGCAUCUCCCAGGCCAAGCACACACAGGCUGCGCCCAGUUCCGCAGGAGCCGUCCCACAGCGUGGCUCUCUGGAUUCUCCCACUUGUCCUCCUUGGAAGGAGCUCUUGCUGGCCAGUGUUUGGAGGGGAGGAUGAGUGCCUGUCACUGAGGCCUCACUAUGGUUGGCGUCUGAAGCUGGGCGGUCGUCAGGCCUGUGCUGAGAGCCGCAGCCCCUGUGCACACCUAACACAGGGCGCUCCCCCUGCUGCUUCCCUGGCUCAGUUCUUCGGAGCUCCAGAGUGAGAAGGCCGCUUCGUCCUUUUUCUCUGGGUGAUGCCCUUAGAAUAACACUAUAUGCAAUGUAACUCACAAUGUUCCAGGACCAAAGm6ACUUGAUGGAGGGGCUAGAGGCGACCCUUGUUGUAAAAGGCGAUCAGAACACCUGAGGGAGGAAGGGGCUUGCAGUUUUCCCAGCCCUUCUCGCUGCCAAGGCAGCAGUGGUGCUGUGGAUGGGCUGGGGACUGCGGGACAGAGCCUGCUACUACUUGGGAGUUGGUGCUGCCCUGUGGCAUGGAGGGGUGGGAGGGGCUGAGAUGGCUGCUGGCCCGGCCUCCAAGAGUUCUGGACAGGAGGCAGACACUGCCCAGAUGCUCGGUGGAGGGACAGUGAUGGCCUUUGACUCAUGAGGCCUGGAGAAAAGUAUCAAAGGUCUCACCAUGUAAGAGUGAUUUCCGAUUUCUCUCCUUUCAGUUGUGUGAAAAAACAGCUGGCCUGGGUUCCAUUAGCAAAUUAAAUCAUCUUCAAUCUUAAAUUAGAAACCAGAAUGAUCUUCAGGAUAAAAAGAACUUCUGAAUCUCUGCAAUAGGAAAUGUUUCGAUCAUGCAAGUGCUUUCCCAGCCAAAUGUCUGUGCUCUCUGUGUCACUGAGGGCCACAGGUUCCUCUAACAUCUGUCACUGUCACUUCACCAGGCAGGCCUUGGAGUUCCAUGACAAAAUCACUUUUGUCAGACAAAGAAUGUAUCCUYUACUUUUCUCAAAUGGAAUAAAAUUAUUUCUUCUGUGGAGGAAAA
Sequence (MODOMICS CODE ENCODING)	GGGGCCUGGACGAGGGGGCCGCGGUCUGGCUAGGGAGCCGCGCGGGCUCAUGGCGUGAAGAAAAUGAGGCACGAGGAAUUGUUAACCAAGACCUUCCAAGGCCCAGCUGUUGUGUGUGGGACUCCGACCAGCCACGUAUACAUGUUUAAGAAUGGCAGUGGGGACUCGGGGGACUCUUCUGAAGAAGAGUCUCACCGUGUGGUUUUGCGGCCCCGGGGCAAGGAGCGCCACAAGAGCGGUGUCCACCAGCCUCCCCAGGCGGGAGCAGGUGACGUGGUGCUGCUGCAGCGGGAGCUGGCCCAGGAGGACAGCCUCAACAAGCUGGCGCUGCAGUAUGGCUGCAAAGUUGCAGAUAUCAAGAAAGUCAACAACUUCAUCAGAGAACAAGACUUAUAUGCUUUGAAAUCUGUUAAGAUUCCAGUGAGAAACCAUGGGAUCCUGAUGGAGACCCACAAAGA2000000006ACUGAAACCCCUUCUGAGCCCGUCUUCCGAGACCACAGUGACCGUGGAACUGCCAGAGGCAGACAGAGCAGGCGCGGGCACCGGUGCCCAGGCCGGCCAACUGAUGGGCUUCUUUAAGGGGAUUGACCAGGAUAUUGAGCGUGCAGUGCAGUCAGAAAUCUUUCUACAUGAAAGUUACUGCAUGG2000000006ACACCUCCCAUCAGCCACUGCUCCCGGCACCUCCGAAGACGCCUAUGGAUGGUGCAGAUUGUGGCAUUCAGUGGUGGAAUGCUGUUUUCAUCAUGCUGCUGAUUGGUAUUGUCUUGCCUGUCUUUUAUUUGGUCUACUUUAAAAUACAAGCUAGUGGUGAGACCCCUAAUAGCUUGAACACAACUGUCAUCCCCAAUGGCUCGAUGGCAAUGGGUACAGUUCCAGGGCAAGCCCCCAGACUAGCAGUUGCAGUGCCAGCCGUCACUUCUGCAGACAGCCAGUUCAGUCAGACCACCCAAGCGGGGAGCUAAGCUUUGUUUUUAAAG2000000006ACUAGGCCCAGCUUUAGCAAUUGGCUGUUGAUGUGCCUCAGCUGUCACUGGCGAUGUCCUAGGGGUGCUGCAUUUUGCUUCCGGGGAAGGAUGG2000000006ACACUUUUCAGAAGUCACUGCAGUAUUCCCAAUUGCACUGGCCCUGGGCAUGGCCUUACCCAGUCUAAGCUGGCAGGAUCUAAAACAGCAGCGACCUCGGCCCCUAUCCAGAGAGGUGCAGCAAGAGAGCCAUUUCCCUGUGACAUUUAGUGG2000000006ACUGGCCAGUUCAUAGCAGCACUGUGAGGACCCCCAAGUUGGACGUGCUCGGAGGGAAAGAUUUAUGGCCUCUGUCGAGGGACCUGCAGCGUGAGAGCCAGUGGCAUCUGCGCGGCUUGCCUGGCUCUUGCUGUAUCCUCACUUCCUGUGGAGCGGGGAUUGGCUCUGAGAAGGAGUGUUCUCUGUCUGCCUGGCAAAGGUGCUGUGGAAUAGGCUUGGCAUGCCACCCUGUUUUAGAGAGUGACAGUUACAGUUGUAACAAGCCUACUUCAUAUUGGCCCCCUCAGUUAGCCUUUUUGAGGCAAUGCCAUUUCUAGAGUUGAAAAAGCCCUGGACCCAAACUGCGGCACUGUUGAAUAAAGGGCAGUCCUACUCCUGUCCUUUUAGAGUGGCUUAGUGUGACACACAGGCAUCUCCCAGGCCAAGCACACACAGGCUGCGCCCAGUUCCGCAGGAGCCGUCCCACAGCGUGGCUCUCUGGAUUCUCCCACUUGUCCUCCUUGGAAGGAGCUCUUGCUGGCCAGUGUUUGGAGGGGAGGAUGAGUGCCUGUCACUGAGGCCUCACUAUGGUUGGCGUCUGAAGCUGGGCGGUCGUCAGGCCUGUGCUGAGAGCCGCAGCCCCUGUGCACACCUAACACAGGGCGCUCCCCCUGCUGCUUCCCUGGCUCAGUUCUUCGGAGCUCCAGAGUGAGAAGGCCGCUUCGUCCUUUUUCUCUGGGUGAUGCCCUUAGAAUAACACUAUAUGCAAUGUAACUCACAAUGUUCCAGGACCAAAG2000000006ACUUGAUGGAGGGGCUAGAGGCGACCCUUGUUGUAAAAGGCGAUCAGAACACCUGAGGGAGGAAGGGGCUUGCAGUUUUCCCAGCCCUUCUCGCUGCCAAGGCAGCAGUGGUGCUGUGGAUGGGCUGGGGACUGCGGGACAGAGCCUGCUACUACUUGGGAGUUGGUGCUGCCCUGUGGCAUGGAGGGGUGGGAGGGGCUGAGAUGGCUGCUGGCCCGGCCUCCAAGAGUUCUGGACAGGAGGCAGACACUGCCCAGAUGCUCGGUGGAGGGACAGUGAUGGCCUUUGACUCAUGAGGCCUGGAGAAAAGUAUCAAAGGUCUCACCAUGUAAGAGUGAUUUCCGAUUUCUCUCCUUUCAGUUGUGUGAAAAAACAGCUGGCCUGGGUUCCAUUAGCAAAUUAAAUCAUCUUCAAUCUUAAAUUAGAAACCAGAAUGAUCUUCAGGAUAAAAAGAACUUCUGAAUCUCUGCAAUAGGAAAUGUUUCGAUCAUGCAAGUGCUUUCCCAGCCAAAUGUCUGUGCUCUCUGUGUCACUGAGGGCCACAGGUUCCUCUAACAUCUGUCACUGUCACUUCACCAGGCAGGCCUUGGAGUUCCAUGACAAAAUCACUUUUGUCAGACAAAGAAUGUAUCCU2000000009UUACUUUUCUCAAAUGGAAUAAAAUUAUUUCUUCUGUGGAGGAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	459	644	970	1064	1217	1993	2627
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	15:99729618:-	15:99729433:-	15:99729107:-	15:99729013:-	15:99728860:-	15:99728084:-	15:99727450:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VyCX26p5UBRL Lny8GcCeVGc9 Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8