General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000559271
Gene ID:	ENSG00000166133
Gene Name:	RPUSD2
Sequence (UNICHARACTER ENCODING)	GUGGUUAUGUGGCUGGACCGCCGCGGAUGGCUCAGGGUUCUUGGЖCAUUGGCGCUACGACCUUAGGCGCCCUAGCUUUACCAGGЖCUUGGAGUGGCGAUAAGGGCCCAAUGGCAGAAACAGUGUCUACCCAGGUUGGGЖCAGAGGGCGGGCUGAGGGCUUCGCAUCAGCAAAACGGUGACGCUGGUGGCGACGCGAAGGUUGAGCUGUCCCCCGGGCCCCCGAAGCCGGCUGGCCGGGAAGUGGAGCCGGCCCCAGUAGGCGGGGAGCAUCCCUCGGCUGCAGCCCCAGGCCCGGGCAAGCAUAAGAAGCGGCGGGGCGCAACCAGGGAGCGUGUCGUGCCGCCCCCGAAGAAGCGGCGGACCGGGGUGAGCUUCGGAGAUGAGCACUUUGCAGAAACCAGUUAUUACUUCGAGGGCGGCCUGCGUAAGGACAAUGAUUUCUUGCGGAACACAGUGCACAGGCAUGAGCCACCAGUCACAGCAGAGCCCAUUCGCCUGCUAGCUGAGAACGAAGAUGUGGUGGUUGUAGACAAGCCUUCCUCCAUUCCCGUUCACCCCUGUGGCCGCUUCCGACACAACACAGUUAUCUUCAPCCUAGGCAAGGAGCACCAACUCAAGGAGCUACACCCCUUGCAUCGGCUUGACCGCCUUACCUCAGGGGUGCUUAUGUUUGCCAAGACAGCUGCAGUCUCUGAGAGAAUUCACGAGCAGGUUCGGGACCGGCAGCUGGAGAAGGAGUACGUGUGCCGGGUGGAAGGGGAGUUCCCCACUGAGGAAGUGACCUGUAAAGAACCCAUCUUAGUGGUGUCUUACAAAGUAGGGGUGUGCCGUGUAGAUCCCCGGGGCAAGCCCUGUGAGЖCAGUGUUCCAGAGGCUAAGCUACAAUGGCCAGUCCAGUGUGGUACGGUGCCGGCCACUCACAGGCCGCACACACCAGAUUCGAGUCCACCUUCAGUUCUUGGGCCAUCCCAUUCUCAACGACCCCAUCUACAACUCAGUUGCCUGGGGUCCUUCUCGAGGCCGGGGCGGCUACAUUCCCAAGACAAACGAGGAGUUGCUACGGGЖCCUGGUAGCAGAGCACCAGGCCAAACAGAGCCUGGAUGUGCUAGAUCUCUGUGAGGGUGACCUGUCCCCAGGЖCUCACAGЖCUCUACGGCCCCCUCCUCAGAGUUGGGCAAGGACGACCUGGAAGAGUUGGCUGCAGCUGCCCAGAAGAUGGAGGAAGUAGCUGAGGCAGCCCCUCAGGAGUUGGЖCACAAUAGCCUUGGCAUCAGAGAAGGCAGUUGAAACAGAUGUCAUGAAUCAAGAGЖCAGACCCACUCUGUGCAGAGUGCCGGCUGGUGCGACAGGAUCCCUUGCCCCAAGACCUUGUGAUGUUCCUACAUGCCCUACGCUAUAAAGGGCCAGGCUUUGAGUЖCUUUUCACCAAUGCCUGCCUGGGCACAGGAUGЖCUGGCAAAAGGЖCUGAGGGUGUGGCCAAUGGAGGGAUUGCUUCUUGGGUUGUGACAAGGAUGGGCUAUAGGGCAAGGGCUGACCCCAUGGGCUAGUACUUGGGGUUUCUAUAG
Sequence (SHORT NAMES ENCODING)	GUGGUUAUGUGGCUGGACCGCCGCGGAUGGCUCAGGGUUCUUGGm6ACAUUGGCGCUACGACCUUAGGCGCCCUAGCUUUACCAGGm6ACUUGGAGUGGCGAUAAGGGCCCAAUGGCAGAAACAGUGUCUACCCAGGUUGGGm6ACAGAGGGCGGGCUGAGGGCUUCGCAUCAGCAAAACGGUGACGCUGGUGGCGACGCGAAGGUUGAGCUGUCCCCCGGGCCCCCGAAGCCGGCUGGCCGGGAAGUGGAGCCGGCCCCAGUAGGCGGGGAGCAUCCCUCGGCUGCAGCCCCAGGCCCGGGCAAGCAUAAGAAGCGGCGGGGCGCAACCAGGGAGCGUGUCGUGCCGCCCCCGAAGAAGCGGCGGACCGGGGUGAGCUUCGGAGAUGAGCACUUUGCAGAAACCAGUUAUUACUUCGAGGGCGGCCUGCGUAAGGACAAUGAUUUCUUGCGGAACACAGUGCACAGGCAUGAGCCACCAGUCACAGCAGAGCCCAUUCGCCUGCUAGCUGAGAACGAAGAUGUGGUGGUUGUAGACAAGCCUUCCUCCAUUCCCGUUCACCCCUGUGGCCGCUUCCGACACAACACAGUUAUCUUCAYCCUAGGCAAGGAGCACCAACUCAAGGAGCUACACCCCUUGCAUCGGCUUGACCGCCUUACCUCAGGGGUGCUUAUGUUUGCCAAGACAGCUGCAGUCUCUGAGAGAAUUCACGAGCAGGUUCGGGACCGGCAGCUGGAGAAGGAGUACGUGUGCCGGGUGGAAGGGGAGUUCCCCACUGAGGAAGUGACCUGUAAAGAACCCAUCUUAGUGGUGUCUUACAAAGUAGGGGUGUGCCGUGUAGAUCCCCGGGGCAAGCCCUGUGAGm6ACAGUGUUCCAGAGGCUAAGCUACAAUGGCCAGUCCAGUGUGGUACGGUGCCGGCCACUCACAGGCCGCACACACCAGAUUCGAGUCCACCUUCAGUUCUUGGGCCAUCCCAUUCUCAACGACCCCAUCUACAACUCAGUUGCCUGGGGUCCUUCUCGAGGCCGGGGCGGCUACAUUCCCAAGACAAACGAGGAGUUGCUACGGGm6ACCUGGUAGCAGAGCACCAGGCCAAACAGAGCCUGGAUGUGCUAGAUCUCUGUGAGGGUGACCUGUCCCCAGGm6ACUCACAGm6ACUCUACGGCCCCCUCCUCAGAGUUGGGCAAGGACGACCUGGAAGAGUUGGCUGCAGCUGCCCAGAAGAUGGAGGAAGUAGCUGAGGCAGCCCCUCAGGAGUUGGm6ACACAAUAGCCUUGGCAUCAGAGAAGGCAGUUGAAACAGAUGUCAUGAAUCAAGAGm6ACAGACCCACUCUGUGCAGAGUGCCGGCUGGUGCGACAGGAUCCCUUGCCCCAAGACCUUGUGAUGUUCCUACAUGCCCUACGCUAUAAAGGGCCAGGCUUUGAGUm6ACUUUUCACCAAUGCCUGCCUGGGCACAGGAUGm6ACUGGCAAAAGGm6ACUGAGGGUGUGGCCAAUGGAGGGAUUGCUUCUUGGGUUGUGACAAGGAUGGGCUAUAGGGCAAGGGCUGACCCCAUGGGCUAGUACUUGGGGUUUCUAUAG
Sequence (MODOMICS CODE ENCODING)	GUGGUUAUGUGGCUGGACCGCCGCGGAUGGCUCAGGGUUCUUGG2000000006ACAUUGGCGCUACGACCUUAGGCGCCCUAGCUUUACCAGG2000000006ACUUGGAGUGGCGAUAAGGGCCCAAUGGCAGAAACAGUGUCUACCCAGGUUGGG2000000006ACAGAGGGCGGGCUGAGGGCUUCGCAUCAGCAAAACGGUGACGCUGGUGGCGACGCGAAGGUUGAGCUGUCCCCCGGGCCCCCGAAGCCGGCUGGCCGGGAAGUGGAGCCGGCCCCAGUAGGCGGGGAGCAUCCCUCGGCUGCAGCCCCAGGCCCGGGCAAGCAUAAGAAGCGGCGGGGCGCAACCAGGGAGCGUGUCGUGCCGCCCCCGAAGAAGCGGCGGACCGGGGUGAGCUUCGGAGAUGAGCACUUUGCAGAAACCAGUUAUUACUUCGAGGGCGGCCUGCGUAAGGACAAUGAUUUCUUGCGGAACACAGUGCACAGGCAUGAGCCACCAGUCACAGCAGAGCCCAUUCGCCUGCUAGCUGAGAACGAAGAUGUGGUGGUUGUAGACAAGCCUUCCUCCAUUCCCGUUCACCCCUGUGGCCGCUUCCGACACAACACAGUUAUCUUCA2000000009UCCUAGGCAAGGAGCACCAACUCAAGGAGCUACACCCCUUGCAUCGGCUUGACCGCCUUACCUCAGGGGUGCUUAUGUUUGCCAAGACAGCUGCAGUCUCUGAGAGAAUUCACGAGCAGGUUCGGGACCGGCAGCUGGAGAAGGAGUACGUGUGCCGGGUGGAAGGGGAGUUCCCCACUGAGGAAGUGACCUGUAAAGAACCCAUCUUAGUGGUGUCUUACAAAGUAGGGGUGUGCCGUGUAGAUCCCCGGGGCAAGCCCUGUGAG2000000006ACAGUGUUCCAGAGGCUAAGCUACAAUGGCCAGUCCAGUGUGGUACGGUGCCGGCCACUCACAGGCCGCACACACCAGAUUCGAGUCCACCUUCAGUUCUUGGGCCAUCCCAUUCUCAACGACCCCAUCUACAACUCAGUUGCCUGGGGUCCUUCUCGAGGCCGGGGCGGCUACAUUCCCAAGACAAACGAGGAGUUGCUACGGG2000000006ACCUGGUAGCAGAGCACCAGGCCAAACAGAGCCUGGAUGUGCUAGAUCUCUGUGAGGGUGACCUGUCCCCAGG2000000006ACUCACAG2000000006ACUCUACGGCCCCCUCCUCAGAGUUGGGCAAGGACGACCUGGAAGAGUUGGCUGCAGCUGCCCAGAAGAUGGAGGAAGUAGCUGAGGCAGCCCCUCAGGAGUUGG2000000006ACACAAUAGCCUUGGCAUCAGAGAAGGCAGUUGAAACAGAUGUCAUGAAUCAAGAG2000000006ACAGACCCACUCUGUGCAGAGUGCCGGCUGGUGCGACAGGAUCCCUUGCCCCAAGACCUUGUGAUGUUCCUACAUGCCCUACGCUAUAAAGGGCCAGGCUUUGAGU2000000006ACUUUUCACCAAUGCCUGCCUGGGCACAGGAUG2000000006ACUGGCAAAAGG2000000006ACUGAGGGUGUGGCCAAUGGAGGGAUUGCUUCUUGGGUUGUGACAAGGAUGGGCUAUAGGGCAAGGGCUGACCCCAUGGGCUAGUACUUGGGGUUUCUAUAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	45	85	139	593	859	1064	1137	1145	1250	1306	1412	1445	1457
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	15:40569376:+	15:40569416:+	15:40569470:+	15:40571767:+	15:40573659:+	15:40573864:+	15:40573937:+	15:40573945:+	15:40574050:+	15:40574106:+	15:40574212:+	15:40574245:+	15:40574257:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8