Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000560415
Gene ID: ENSG00000259330
Gene Name: INAFM2
Sequence (UNICHARACTER ENCODING) GUUUAUGACGUUCUUUCACAAAAGAGUAUAAUCAUUCUUAGACUGUUGACAUGGCUGUGGAAAGCCUUAGGAGAAGUAGAAACAAUUUAGGGAGGGUGGGGAAUGUACUCAUCCCCUCUUCUUUCCAPCCUAGUGCCCCCACCAAAGAGGCUUCUUGUUGCAGCCCUCAGUAUCUGGAUAUGGGCCAGGGAGGAAGGAAGGGAAAGAGCAAUGCUGCUGUGCUUCAAUCCUGGCCUUCCCCUCACAGAAUUCUUUUAGGAAGAGCAAGCUUUUAAUCCUUUGAACUUGUAGAACAUCUGGGAGUCCACUUCCCUGUCCUCUUCCUGAUCCCUGCUUUCUGGЖCUGUUUAAAUCCUCUUUGGGAUGGAUCAGAGAGUCUAGAGAGGCCACUCAUAGGUCCAGCUGCUGGCCUCCUGACUCUCCAAAGCCUUCACUGGAAUUGGGЖCAUUUGCUCCAGCCCUAGCUGUGAACAUGACCAGAGЖCAUUAUUUAUAAUUCAGCCAUUUAAGAUAUACCUGUACUCAAAAAGUCCUGUAUAUUUUUAAAAAGUUUUAUUUUUCAGGUGAACAAAAAUACAPCCUAAGAACUCUGCCUAA
Sequence (SHORT NAMES ENCODING) GUUUAUGACGUUCUUUCACAAAAGAGUAUAAUCAUUCUUAGACUGUUGACAUGGCUGUGGAAAGCCUUAGGAGAAGUAGAAACAAUUUAGGGAGGGUGGGGAAUGUACUCAUCCCCUCUUCUUUCCAYCCUAGUGCCCCCACCAAAGAGGCUUCUUGUUGCAGCCCUCAGUAUCUGGAUAUGGGCCAGGGAGGAAGGAAGGGAAAGAGCAAUGCUGCUGUGCUUCAAUCCUGGCCUUCCCCUCACAGAAUUCUUUUAGGAAGAGCAAGCUUUUAAUCCUUUGAACUUGUAGAACAUCUGGGAGUCCACUUCCCUGUCCUCUUCCUGAUCCCUGCUUUCUGGm6ACUGUUUAAAUCCUCUUUGGGAUGGAUCAGAGAGUCUAGAGAGGCCACUCAUAGGUCCAGCUGCUGGCCUCCUGACUCUCCAAAGCCUUCACUGGAAUUGGGm6ACAUUUGCUCCAGCCCUAGCUGUGAACAUGACCAGAGm6ACAUUAUUUAUAAUUCAGCCAUUUAAGAUAUACCUGUACUCAAAAAGUCCUGUAUAUUUUUAAAAAGUUUUAUUUUUCAGGUGAACAAAAAUACAYCCUAAGAACUCUGCCUAA
Sequence (MODOMICS CODE ENCODING) GUUUAUGACGUUCUUUCACAAAAGAGUAUAAUCAUUCUUAGACUGUUGACAUGGCUGUGGAAAGCCUUAGGAGAAGUAGAAACAAUUUAGGGAGGGUGGGGAAUGUACUCAUCCCCUCUUCUUUCCA2000000009UCCUAGUGCCCCCACCAAAGAGGCUUCUUGUUGCAGCCCUCAGUAUCUGGAUAUGGGCCAGGGAGGAAGGAAGGGAAAGAGCAAUGCUGCUGUGCUUCAAUCCUGGCCUUCCCCUCACAGAAUUCUUUUAGGAAGAGCAAGCUUUUAAUCCUUUGAACUUGUAGAACAUCUGGGAGUCCACUUCCCUGUCCUCUUCCUGAUCCCUGCUUUCUGG2000000006ACUGUUUAAAUCCUCUUUGGGAUGGAUCAGAGAGUCUAGAGAGGCCACUCAUAGGUCCAGCUGCUGGCCUCCUGACUCUCCAAAGCCUUCACUGGAAUUGGG2000000006ACAUUUGCUCCAGCCCUAGCUGUGAACAUGACCAGAG2000000006ACAUUAUUUAUAAUUCAGCCAUUUAAGAUAUACCUGUACUCAAAAAGUCCUGUAUAUUUUUAAAAAGUUUUAUUUUUCAGGUGAACAAAAAUACA2000000009UCCUAAGAACUCUGCCUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 128 342 444 481 576
Modification Positions Y m6A m6A m6A Y
Genomic Coordinates 15:40325343:+ 15:40326463:+ 15:40326565:+ 15:40326602:+ 15:40326697:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
93arJtwJmuS9
ArijeGVTwYBw
BkoLW2CBToyL
KTLz8piFYdwC
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
XWZVGdLC6gGJ
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8