Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000560606
Gene ID: ENSG00000166831
Gene Name: RBPMS2
Sequence (UNICHARACTER ENCODING) GUUUUCCAUCGGGAUGACACCGGGAGAGCUCGCUCGAAGCAGUGGGUAGGGGACUGCUGAAGCACGUGCAUUCGUUACUUGAACAUUGUCCGGACACUGUUUGUCAGCGGCCUCCCUGUGGACAUUAAACCCAGAGAACUCUACUUGCUCUUCCGGCCGUUCAAGGGGUAUGAAGGGUCCCUGAUCAAGCUCACUGCAAGACAGCCUGUUGGUUUUGUGAUCUUUGACAGCCGUGCAGGAGCAGAAGCGGCCAAGAAUGCGCUGAACGGUAUUCGCUUUGAUCCCGAAAAUCCACAGACUCUGAGGCUAGAGUUUGCCAAAGCCAACACCAAGAUGGCCAAGAGCAAGCUAAUGGCAACUCCAAAUCCCAGCAACGUGCACCCCGCCCUAGGAGCACACUUCAUCGCACGGGACCCCUAUGACCUGAUGGGGGCUGCUCUGAUCCCUGCAUCCCCAGAGGCCUGGGCCCCCUACCCUUUGUЖCЖCCACAGAGCUGACCCCAGCCAUCUCCCAUGCUGCGUUCACCUACCCAACUGCCACUGCCGCUGCCGCCGCCCUCCACGCUCAGGUGCGCUGGUACCCUUCCUCUGACACCACCCAGCAAGGAUGGAAGUACCGUCAGUUCUGUUAGUUUUUCAGUCUGGUCACCGGGGAGGUGGUUCUGGUAAUCUGUGGUGGUGCCGGGACAGGCGCCCCGAGUUCCCACUGCCCCCGGGCGGCCUGCACAGAGCUGCUGCCCUCCAGAGЖCUGUGAAUCCCAAGCCUGACUCAGUGGACUGCUUCCUGUUCCCCUCCCUCCUCUUCCUCACCUUGUUCUGCACCCUCAAGCCUUUCUCCAAUGCCUCCCAGGAGGAUUUGGGGACUUUCUCCCUGGGGCGCCCAGAUCCAGCUCGGAGGCCUCACUGGGACCUGGCAAGGCCUGACCUCCCGCCCAAACUUGCUUCUGUAGCUCCCCCUCGAGGAAGUGAGGUGUUUAAUUUUGCAUGUUUUCUGGCAUGAAUUAAGACACUUAUACUUGUAUAUAUGAGUGUACAGUUUGUUCUCACACUGUCACCAUAGCGACAGGUCCUGGCUCCCAGUGGUUCAPCCUGCCUGCCCCUCUCUCCUCGCCCCGCCCCUGCACCCACCCCGCUUCAGGGAGGCCCAAGUUCCGUGGCCCCACACGCUUCCAGGCUCAGCUCCCACCPCCACCCAACAGAUAGAUGGGGUUUGCUUUUUCAUUUCACAUGGGGCUCCUCCGCUCCUGCCUUCUCGGAUGGGCCAACAGUCGUAAGAAAGCCCUCUCUGCCCGUUCUGUUCACCUCUCCACAGCGCACCCCGCCCGCCGCUGCUCCUCAUUCUUUCCAAACCUCGAAACCAACCAAAACGUGAGAAGUAUUUUUGUACCCUGUGUAACAAAAUAUUUAUGCAUCAUAAAGGAUUUUUCAUGUGCGUACCAUUAAUUAUUAAAGCGACCUCGUUCGCCCUGUCAGAUAAGUUUAAUGUUUAGUUUGAGGCAUGAAGAAGAAAAGGGUUUCCAUUCUUCAGCAGUACGCCUUUGUGUCUGGCAUUUGUUUAAGAAAAUGAAAUGAAGGAAACACUGUGCAAUGUUUUUUGUUUUGAGCAUAUCAGUGCUPUACUGUCAGCCGCAGCUGUGACCGUCUGGCCAUUUCAGACUUGGGAGAUGAGGCGGCUGUUGUCAUUGCUGAUCCUGUGAGAAUGUGAAACUGGAUAAUAUAUGAAAUGCAAAAUAAAACAAAACCAAAAUG
Sequence (SHORT NAMES ENCODING) GUUUUCCAUCGGGAUGACACCGGGAGAGCUCGCUCGAAGCAGUGGGUAGGGGACUGCUGAAGCACGUGCAUUCGUUACUUGAACAUUGUCCGGACACUGUUUGUCAGCGGCCUCCCUGUGGACAUUAAACCCAGAGAACUCUACUUGCUCUUCCGGCCGUUCAAGGGGUAUGAAGGGUCCCUGAUCAAGCUCACUGCAAGACAGCCUGUUGGUUUUGUGAUCUUUGACAGCCGUGCAGGAGCAGAAGCGGCCAAGAAUGCGCUGAACGGUAUUCGCUUUGAUCCCGAAAAUCCACAGACUCUGAGGCUAGAGUUUGCCAAAGCCAACACCAAGAUGGCCAAGAGCAAGCUAAUGGCAACUCCAAAUCCCAGCAACGUGCACCCCGCCCUAGGAGCACACUUCAUCGCACGGGACCCCUAUGACCUGAUGGGGGCUGCUCUGAUCCCUGCAUCCCCAGAGGCCUGGGCCCCCUACCCUUUGUm6ACm6ACCACAGAGCUGACCCCAGCCAUCUCCCAUGCUGCGUUCACCUACCCAACUGCCACUGCCGCUGCCGCCGCCCUCCACGCUCAGGUGCGCUGGUACCCUUCCUCUGACACCACCCAGCAAGGAUGGAAGUACCGUCAGUUCUGUUAGUUUUUCAGUCUGGUCACCGGGGAGGUGGUUCUGGUAAUCUGUGGUGGUGCCGGGACAGGCGCCCCGAGUUCCCACUGCCCCCGGGCGGCCUGCACAGAGCUGCUGCCCUCCAGAGm6ACUGUGAAUCCCAAGCCUGACUCAGUGGACUGCUUCCUGUUCCCCUCCCUCCUCUUCCUCACCUUGUUCUGCACCCUCAAGCCUUUCUCCAAUGCCUCCCAGGAGGAUUUGGGGACUUUCUCCCUGGGGCGCCCAGAUCCAGCUCGGAGGCCUCACUGGGACCUGGCAAGGCCUGACCUCCCGCCCAAACUUGCUUCUGUAGCUCCCCCUCGAGGAAGUGAGGUGUUUAAUUUUGCAUGUUUUCUGGCAUGAAUUAAGACACUUAUACUUGUAUAUAUGAGUGUACAGUUUGUUCUCACACUGUCACCAUAGCGACAGGUCCUGGCUCCCAGUGGUUCAYCCUGCCUGCCCCUCUCUCCUCGCCCCGCCCCUGCACCCACCCCGCUUCAGGGAGGCCCAAGUUCCGUGGCCCCACACGCUUCCAGGCUCAGCUCCCACCYCCACCCAACAGAUAGAUGGGGUUUGCUUUUUCAUUUCACAUGGGGCUCCUCCGCUCCUGCCUUCUCGGAUGGGCCAACAGUCGUAAGAAAGCCCUCUCUGCCCGUUCUGUUCACCUCUCCACAGCGCACCCCGCCCGCCGCUGCUCCUCAUUCUUUCCAAACCUCGAAACCAACCAAAACGUGAGAAGUAUUUUUGUACCCUGUGUAACAAAAUAUUUAUGCAUCAUAAAGGAUUUUUCAUGUGCGUACCAUUAAUUAUUAAAGCGACCUCGUUCGCCCUGUCAGAUAAGUUUAAUGUUUAGUUUGAGGCAUGAAGAAGAAAAGGGUUUCCAUUCUUCAGCAGUACGCCUUUGUGUCUGGCAUUUGUUUAAGAAAAUGAAAUGAAGGAAACACUGUGCAAUGUUUUUUGUUUUGAGCAUAUCAGUGCUYUACUGUCAGCCGCAGCUGUGACCGUCUGGCCAUUUCAGACUUGGGAGAUGAGGCGGCUGUUGUCAUUGCUGAUCCUGUGAGAAUGUGAAACUGGAUAAUAUAUGAAAUGCAAAAUAAAACAAAACCAAAAUG
Sequence (MODOMICS CODE ENCODING) GUUUUCCAUCGGGAUGACACCGGGAGAGCUCGCUCGAAGCAGUGGGUAGGGGACUGCUGAAGCACGUGCAUUCGUUACUUGAACAUUGUCCGGACACUGUUUGUCAGCGGCCUCCCUGUGGACAUUAAACCCAGAGAACUCUACUUGCUCUUCCGGCCGUUCAAGGGGUAUGAAGGGUCCCUGAUCAAGCUCACUGCAAGACAGCCUGUUGGUUUUGUGAUCUUUGACAGCCGUGCAGGAGCAGAAGCGGCCAAGAAUGCGCUGAACGGUAUUCGCUUUGAUCCCGAAAAUCCACAGACUCUGAGGCUAGAGUUUGCCAAAGCCAACACCAAGAUGGCCAAGAGCAAGCUAAUGGCAACUCCAAAUCCCAGCAACGUGCACCCCGCCCUAGGAGCACACUUCAUCGCACGGGACCCCUAUGACCUGAUGGGGGCUGCUCUGAUCCCUGCAUCCCCAGAGGCCUGGGCCCCCUACCCUUUGU2000000006AC2000000006ACCACAGAGCUGACCCCAGCCAUCUCCCAUGCUGCGUUCACCUACCCAACUGCCACUGCCGCUGCCGCCGCCCUCCACGCUCAGGUGCGCUGGUACCCUUCCUCUGACACCACCCAGCAAGGAUGGAAGUACCGUCAGUUCUGUUAGUUUUUCAGUCUGGUCACCGGGGAGGUGGUUCUGGUAAUCUGUGGUGGUGCCGGGACAGGCGCCCCGAGUUCCCACUGCCCCCGGGCGGCCUGCACAGAGCUGCUGCCCUCCAGAG2000000006ACUGUGAAUCCCAAGCCUGACUCAGUGGACUGCUUCCUGUUCCCCUCCCUCCUCUUCCUCACCUUGUUCUGCACCCUCAAGCCUUUCUCCAAUGCCUCCCAGGAGGAUUUGGGGACUUUCUCCCUGGGGCGCCCAGAUCCAGCUCGGAGGCCUCACUGGGACCUGGCAAGGCCUGACCUCCCGCCCAAACUUGCUUCUGUAGCUCCCCCUCGAGGAAGUGAGGUGUUUAAUUUUGCAUGUUUUCUGGCAUGAAUUAAGACACUUAUACUUGUAUAUAUGAGUGUACAGUUUGUUCUCACACUGUCACCAUAGCGACAGGUCCUGGCUCCCAGUGGUUCA2000000009UCCUGCCUGCCCCUCUCUCCUCGCCCCGCCCCUGCACCCACCCCGCUUCAGGGAGGCCCAAGUUCCGUGGCCCCACACGCUUCCAGGCUCAGCUCCCACC2000000009UCCACCCAACAGAUAGAUGGGGUUUGCUUUUUCAUUUCACAUGGGGCUCCUCCGCUCCUGCCUUCUCGGAUGGGCCAACAGUCGUAAGAAAGCCCUCUCUGCCCGUUCUGUUCACCUCUCCACAGCGCACCCCGCCCGCCGCUGCUCCUCAUUCUUUCCAAACCUCGAAACCAACCAAAACGUGAGAAGUAUUUUUGUACCCUGUGUAACAAAAUAUUUAUGCAUCAUAAAGGAUUUUUCAUGUGCGUACCAUUAAUUAUUAAAGCGACCUCGUUCGCCCUGUCAGAUAAGUUUAAUGUUUAGUUUGAGGCAUGAAGAAGAAAAGGGUUUCCAUUCUUCAGCAGUACGCCUUUGUGUCUGGCAUUUGUUUAAGAAAAUGAAAUGAAGGAAACACUGUGCAAUGUUUUUUGUUUUGAGCAUAUCAGUGCU2000000009UUACUGUCAGCCGCAGCUGUGACCGUCUGGCCAUUUCAGACUUGGGAGAUGAGGCGGCUGUUGUCAUUGCUGAUCCUGUGAGAAUGUGAAACUGGAUAAUAUAUGAAAUGCAAAAUAAAACAAAACCAAAAUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 482 484 746 1085 1185 1614
Modification Positions m6A m6A m6A Y Y Y
Genomic Coordinates 15:64748504:- 15:64748502:- 15:64740892:- 15:64740553:- 15:64740453:- 15:64740024:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 2CxsF9wZGeaB
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Y7p6mwddGvEB
2CxsF9wZGeaB
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
gBgcfFQ5WN9C
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
nGifePrmgHfe
Q36pf44ZRvxu
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Y7p6mwddGvEB
3TeAZFYFxgvp
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
dknfVe6BK8aP
Yfn77uLS5tv8
JkWoGWVwjNda
Yfn77uLS5tv8
dknfVe6BK8aP
kx7BHU7ZycYE
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8