General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000558353
Gene ID:	ENSG00000104131
Gene Name:	EIF3J
Sequence (UNICHARACTER ENCODING)	UUAUGGAAUAGAUGCUAUGAACCCAUCUUCAAGAGAUGACUPUACAGAGUUUGGAAAGUUACUAAAAGAUAAAAUUACACAAUAUGAAAAGUCACUAUAUUAUGCCAGUUUUUUGGAAGUCUUAGUUCGAGAUGUGUGUAUUUCAUUGGAAAUUGAUGACUUGAAAAAAAUUACCAAUUCACUGACUGUGCUUUGCAGUGAAAAACAGAAGCAAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGUGUGGUUCCUGGAGGGGGAUUAAAAGCCACCAUGAAAGAUGAUCUGGCAGAUUAUGGUGGUUAUGAUGGAGGAUAUGUACЖAGACUAUGAAGЖCUUCAUGUGACAUUUUAUCUUUUCUUGGUGUCAUCUPUAUGUUGCCCACAAUCCCUUGAACAUGUAGCACAACUUCCUUUCCUUUCAGUUCUGCCAAAUGCUACЖAUCAGAAGUGCAGUAUCUUUUGUGCUGGUUAUUUAACCCCUUGACACUUAGGUGCUAAUGUGCAAAUGAGGGAACUUGGAUCUUGCUGCCAAGGGGUUAAAAUUGGGAACCUAAGUUGCUACUAAAUCAUAGUUCAAAACCUAAUAAUGUUGUCGUUGUUGCUAUCUGAUUUCAUAGCAGCAGUCACUAAAUUGGAAACAAAAGGUUGCAACGUGACAAAAAAAAUUGUGUAGUAUUUACCAGCACCAUUCAGUAAUACAGCCUUAACCAUACCUCCUUGAACUACUUCAUAЖCUUGUCAAGAAAAGCAGUUUGCAGCAAGGGCAUGUGGUGUGCACCUAGUAUUAAAAUUGCUUUGUCUUAAAAUUGAACAUGAGGAUAUUAAAAAUACЖUUGUGAAGAAGACUGCUUAUCUCAGAGUGAAGAUACUGCGGCUGAAAAGCACUAGUUUGAUAUAAAAUUAAAAUGACCAAAACCCUCCAACUUUGAAGCUAAAGAAGGAAUUUCCUCCUGAAAAGUUUCUUACUUGCUACCUACUACCCACAAAGGЖCUGAUAUGGUACAGUACCGGGAUUGUUCA
Sequence (SHORT NAMES ENCODING)	UUAUGGAAUAGAUGCUAUGAACCCAUCUUCAAGAGAUGACUYUACAGAGUUUGGAAAGUUACUAAAAGAUAAAAUUACACAAUAUGAAAAGUCACUAUAUUAUGCCAGUUUUUUGGAAGUCUUAGUUCGAGAUGUGUGUAUUUCAUUGGAAAUUGAUGACUUGAAAAAAAUUACCAAUUCACUGACUGUGCUUUGCAGUGAAAAACAGAAGCAAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGUGUGGUUCCUGGAGGGGGAUUAAAAGCCACCAUGAAAGAUGAUCUGGCAGAUUAUGGUGGUUAUGAUGGAGGAUAUGUACm6AAGACUAUGAAGm6ACUUCAUGUGACAUUUUAUCUUUUCUUGGUGUCAUCUYUAUGUUGCCCACAAUCCCUUGAACAUGUAGCACAACUUCCUUUCCUUUCAGUUCUGCCAAAUGCUACm6AAUCAGAAGUGCAGUAUCUUUUGUGCUGGUUAUUUAACCCCUUGACACUUAGGUGCUAAUGUGCAAAUGAGGGAACUUGGAUCUUGCUGCCAAGGGGUUAAAAUUGGGAACCUAAGUUGCUACUAAAUCAUAGUUCAAAACCUAAUAAUGUUGUCGUUGUUGCUAUCUGAUUUCAUAGCAGCAGUCACUAAAUUGGAAACAAAAGGUUGCAACGUGACAAAAAAAAUUGUGUAGUAUUUACCAGCACCAUUCAGUAAUACAGCCUUAACCAUACCUCCUUGAACUACUUCAUAm6ACUUGUCAAGAAAAGCAGUUUGCAGCAAGGGCAUGUGGUGUGCACCUAGUAUUAAAAUUGCUUUGUCUUAAAAUUGAACAUGAGGAUAUUAAAAAUACm6AUUGUGAAGAAGACUGCUUAUCUCAGAGUGAAGAUACUGCGGCUGAAAAGCACUAGUUUGAUAUAAAAUUAAAAUGACCAAAACCCUCCAACUUUGAAGCUAAAGAAGGAAUUUCCUCCUGAAAAGUUUCUUACUUGCUACCUACUACCCACAAAGGm6ACUGAUAUGGUACAGUACCGGGAUUGUUCA
Sequence (MODOMICS CODE ENCODING)	UUAUGGAAUAGAUGCUAUGAACCCAUCUUCAAGAGAUGACU2000000009UUACAGAGUUUGGAAAGUUACUAAAAGAUAAAAUUACACAAUAUGAAAAGUCACUAUAUUAUGCCAGUUUUUUGGAAGUCUUAGUUCGAGAUGUGUGUAUUUCAUUGGAAAUUGAUGACUUGAAAAAAAUUACCAAUUCACUGACUGUGCUUUGCAGUGAAAAACAGAAGCAAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGUGUGGUUCCUGGAGGGGGAUUAAAAGCCACCAUGAAAGAUGAUCUGGCAGAUUAUGGUGGUUAUGAUGGAGGAUAUGUAC2000000006AAGACUAUGAAG2000000006ACUUCAUGUGACAUUUUAUCUUUUCUUGGUGUCAUCU2000000009UUAUGUUGCCCACAAUCCCUUGAACAUGUAGCACAACUUCCUUUCCUUUCAGUUCUGCCAAAUGCUAC2000000006AAUCAGAAGUGCAGUAUCUUUUGUGCUGGUUAUUUAACCCCUUGACACUUAGGUGCUAAUGUGCAAAUGAGGGAACUUGGAUCUUGCUGCCAAGGGGUUAAAAUUGGGAACCUAAGUUGCUACUAAAUCAUAGUUCAAAACCUAAUAAUGUUGUCGUUGUUGCUAUCUGAUUUCAUAGCAGCAGUCACUAAAUUGGAAACAAAAGGUUGCAACGUGACAAAAAAAAUUGUGUAGUAUUUACCAGCACCAUUCAGUAAUACAGCCUUAACCAUACCUCCUUGAACUACUUCAUA2000000006ACUUGUCAAGAAAAGCAGUUUGCAGCAAGGGCAUGUGGUGUGCACCUAGUAUUAAAAUUGCUUUGUCUUAAAAUUGAACAUGAGGAUAUUAAAAAUAC2000000006AUUGUGAAGAAGACUGCUUAUCUCAGAGUGAAGAUACUGCGGCUGAAAAGCACUAGUUUGAUAUAAAAUUAAAAUGACCAAAACCCUCCAACUUUGAAGCUAAAGAAGGAAUUUCCUCCUGAAAAGUUUCUUACUUGCUACCUACUACCCACAAAGG2000000006ACUGAUAUGGUACAGUACCGGGAUUGUUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	42	330	342	379	447	740	838	995
Modification Positions	Y	m6A	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	15:44557546:+	15:44561127:+	15:44561139:+	15:44561176:+	15:44561244:+	15:44561537:+	15:44561635:+	15:44563000:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq