General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000567039
Gene ID:	ENSG00000168806
Gene Name:	LCMT2
Sequence (UNICHARACTER ENCODING)	UUUUUUUCCCCCUACCGAGGUCCGUGAGGUGUGUGCUAACCAAGGGGCGGCUCACAACCGUGACAGЖCUGCCAUUCCUGAGUCUCUUCUGGCCAUGGGCCCCCGGAGCCGUGAGCGUCGGGCAGGCGCGGUACAGAACACCAACGACAGCAGCGCCCUCAGCAAGCGUUCCCUGGCCGCGCGCGGAAGAACGCCGGCGGGUGGAAAAUAUUGAЖCCCUUUGACGAAUUUGAGGAGUGGCAUCUGAAGUGCGCCCAUUAUUUCAUUCUGGCAGCUUCUAGGGGAGACACCCUCUCCCACACCCUAGUGUUUCCAUCCUCAGAGGCAUUUCCUCGCGUAAAUCCUGCUUCGCCUUCAGGGGUAUUCCCUGCCAGCGUAGUCAGUAGCGAGGGCCAGGUCCCAAACCUGAAGAGAUAUGGCCACGCCUCUGUCUUCUUGAGCCCAGACGUUAUUCUCAGUGCAGGAGGAUUUGGAGAGCAGGAGGGGCGGCACUGCCGAGUGAGCCAGUUUCACUUGCUCUCAAGAGAUUGUGЖCUCUGAAUGGAAAGGCAGCCAAAUAGGCAGUUGUGGGЖCUGGAGUUCAGUGGGAUGGЖCGCCUUUAUCACACCAUGACAAGACUCUCAGAGAGUCGGGUUCUGGUUCUGGGAGGGAGЖCUGUCCCCAGUAAGUCCAGCCUUGGGGGUUCUCCAGCUUCAUUUUUUUAAGAGUGAGGAUAAUAACACUGAGGЖCCUGAAAGUGЖCAAUAACAAAGGCUGGCCGAAAGGAUGAUUCCACUUUGUGUUGUUGGCGGCAUUCAACAACAGAAGUGUCCUGUCAGAAUCAGGAAUAUUUGUUUGUGUAUGGGGGUCGAAGCGUGGUGGAACCUGUACUAAGUGЖCUGGCAUUUCCUCCAUGUAGGGЖCAAUGGCUUGGGUCAGGAUCCCAGUGGAGGGAGAAGUACCUGAAGCCCGGCAUUCUCACAGUGCCUGCACUUGGCAAGGGGGAGCCCUUAUUGCUGGЖGGUCUCGGGGCUUCUGAGGAGCCAUUGAЖCUCUGUGCUCUUUCUGAGACCAAUCUCUUGUGGAUUCCUCUGGGAGUCAGUAGACAUCCAGCCUCCCAUUACCCCAAGGUACUCCCACACAGCUCAUGUGCUCAAUGGAAAGCUGUUACUGGUUGGAGGGAUCUGGAUUCAUUCCUCCUCAUUUCCUGGAGUGЖCUGUGAUCAAUPUGACUACAGGAUUGAGCUCUGAGUAUCAGAUUGACACAACAUAUGUGCCAUGGCCAUUAAUGUUACACAACCAUACUAGUAUCCUUCUUCCUGAAGAGCAACAGCUCCUGCUCCUUGGAGGUGGUGGGAACUGCUUUUCCUUUGGUACCUACUUCAACCCCCAUACAGUCACAUUAGACCUUUCUUCCUUAAGUGCUGGGCAGUAAGGЖCUGGЖCUAAUAUUCAGGACCCACUAAAGUAGACAAUAAAGUUUUCCACAAAUAGGAUGACCCUCUAGCUAUAGAUACUGCCACUCCUCCUUUCCCCAUCCUUUUUUUCCCUUAGCACUAUUCAGUGCAAAAAGUGAAAAA
Sequence (SHORT NAMES ENCODING)	UUUUUUUCCCCCUACCGAGGUCCGUGAGGUGUGUGCUAACCAAGGGGCGGCUCACAACCGUGACAGm6ACUGCCAUUCCUGAGUCUCUUCUGGCCAUGGGCCCCCGGAGCCGUGAGCGUCGGGCAGGCGCGGUACAGAACACCAACGACAGCAGCGCCCUCAGCAAGCGUUCCCUGGCCGCGCGCGGAAGAACGCCGGCGGGUGGAAAAUAUUGAm6ACCCUUUGACGAAUUUGAGGAGUGGCAUCUGAAGUGCGCCCAUUAUUUCAUUCUGGCAGCUUCUAGGGGAGACACCCUCUCCCACACCCUAGUGUUUCCAUCCUCAGAGGCAUUUCCUCGCGUAAAUCCUGCUUCGCCUUCAGGGGUAUUCCCUGCCAGCGUAGUCAGUAGCGAGGGCCAGGUCCCAAACCUGAAGAGAUAUGGCCACGCCUCUGUCUUCUUGAGCCCAGACGUUAUUCUCAGUGCAGGAGGAUUUGGAGAGCAGGAGGGGCGGCACUGCCGAGUGAGCCAGUUUCACUUGCUCUCAAGAGAUUGUGm6ACUCUGAAUGGAAAGGCAGCCAAAUAGGCAGUUGUGGGm6ACUGGAGUUCAGUGGGAUGGm6ACGCCUUUAUCACACCAUGACAAGACUCUCAGAGAGUCGGGUUCUGGUUCUGGGAGGGAGm6ACUGUCCCCAGUAAGUCCAGCCUUGGGGGUUCUCCAGCUUCAUUUUUUUAAGAGUGAGGAUAAUAACACUGAGGm6ACCUGAAAGUGm6ACAAUAACAAAGGCUGGCCGAAAGGAUGAUUCCACUUUGUGUUGUUGGCGGCAUUCAACAACAGAAGUGUCCUGUCAGAAUCAGGAAUAUUUGUUUGUGUAUGGGGGUCGAAGCGUGGUGGAACCUGUACUAAGUGm6ACUGGCAUUUCCUCCAUGUAGGGm6ACAAUGGCUUGGGUCAGGAUCCCAGUGGAGGGAGAAGUACCUGAAGCCCGGCAUUCUCACAGUGCCUGCACUUGGCAAGGGGGAGCCCUUAUUGCUGGm6AGGUCUCGGGGCUUCUGAGGAGCCAUUGAm6ACUCUGUGCUCUUUCUGAGACCAAUCUCUUGUGGAUUCCUCUGGGAGUCAGUAGACAUCCAGCCUCCCAUUACCCCAAGGUACUCCCACACAGCUCAUGUGCUCAAUGGAAAGCUGUUACUGGUUGGAGGGAUCUGGAUUCAUUCCUCCUCAUUUCCUGGAGUGm6ACUGUGAUCAAUYUGACUACAGGAUUGAGCUCUGAGUAUCAGAUUGACACAACAUAUGUGCCAUGGCCAUUAAUGUUACACAACCAUACUAGUAUCCUUCUUCCUGAAGAGCAACAGCUCCUGCUCCUUGGAGGUGGUGGGAACUGCUUUUCCUUUGGUACCUACUUCAACCCCCAUACAGUCACAUUAGACCUUUCUUCCUUAAGUGCUGGGCAGUAAGGm6ACUGGm6ACUAAUAUUCAGGACCCACUAAAGUAGACAAUAAAGUUUUCCACAAAUAGGAUGACCCUCUAGCUAUAGAUACUGCCACUCCUCCUUUCCCCAUCCUUUUUUUCCCUUAGCACUAUUCAGUGCAAAAAGUGAAAAA
Sequence (MODOMICS CODE ENCODING)	UUUUUUUCCCCCUACCGAGGUCCGUGAGGUGUGUGCUAACCAAGGGGCGGCUCACAACCGUGACAG2000000006ACUGCCAUUCCUGAGUCUCUUCUGGCCAUGGGCCCCCGGAGCCGUGAGCGUCGGGCAGGCGCGGUACAGAACACCAACGACAGCAGCGCCCUCAGCAAGCGUUCCCUGGCCGCGCGCGGAAGAACGCCGGCGGGUGGAAAAUAUUGA2000000006ACCCUUUGACGAAUUUGAGGAGUGGCAUCUGAAGUGCGCCCAUUAUUUCAUUCUGGCAGCUUCUAGGGGAGACACCCUCUCCCACACCCUAGUGUUUCCAUCCUCAGAGGCAUUUCCUCGCGUAAAUCCUGCUUCGCCUUCAGGGGUAUUCCCUGCCAGCGUAGUCAGUAGCGAGGGCCAGGUCCCAAACCUGAAGAGAUAUGGCCACGCCUCUGUCUUCUUGAGCCCAGACGUUAUUCUCAGUGCAGGAGGAUUUGGAGAGCAGGAGGGGCGGCACUGCCGAGUGAGCCAGUUUCACUUGCUCUCAAGAGAUUGUG2000000006ACUCUGAAUGGAAAGGCAGCCAAAUAGGCAGUUGUGGG2000000006ACUGGAGUUCAGUGGGAUGG2000000006ACGCCUUUAUCACACCAUGACAAGACUCUCAGAGAGUCGGGUUCUGGUUCUGGGAGGGAG2000000006ACUGUCCCCAGUAAGUCCAGCCUUGGGGGUUCUCCAGCUUCAUUUUUUUAAGAGUGAGGAUAAUAACACUGAGG2000000006ACCUGAAAGUG2000000006ACAAUAACAAAGGCUGGCCGAAAGGAUGAUUCCACUUUGUGUUGUUGGCGGCAUUCAACAACAGAAGUGUCCUGUCAGAAUCAGGAAUAUUUGUUUGUGUAUGGGGGUCGAAGCGUGGUGGAACCUGUACUAAGUG2000000006ACUGGCAUUUCCUCCAUGUAGGG2000000006ACAAUGGCUUGGGUCAGGAUCCCAGUGGAGGGAGAAGUACCUGAAGCCCGGCAUUCUCACAGUGCCUGCACUUGGCAAGGGGGAGCCCUUAUUGCUGG2000000006AGGUCUCGGGGCUUCUGAGGAGCCAUUGA2000000006ACUCUGUGCUCUUUCUGAGACCAAUCUCUUGUGGAUUCCUCUGGGAGUCAGUAGACAUCCAGCCUCCCAUUACCCCAAGGUACUCCCACACAGCUCAUGUGCUCAAUGGAAAGCUGUUACUGGUUGGAGGGAUCUGGAUUCAUUCCUCCUCAUUUCCUGGAGUG2000000006ACUGUGAUCAAU2000000009UUGACUACAGGAUUGAGCUCUGAGUAUCAGAUUGACACAACAUAUGUGCCAUGGCCAUUAAUGUUACACAACCAUACUAGUAUCCUUCUUCCUGAAGAGCAACAGCUCCUGCUCCUUGGAGGUGGUGGGAACUGCUUUUCCUUUGGUACCUACUUCAACCCCCAUACAGUCACAUUAGACCUUUCUUCCUUAAGUGCUGGGCAGUAAGG2000000006ACUGG2000000006ACUAAUAUUCAGGACCCACUAAAGUAGACAAUAAAGUUUUCCACAAAUAGGAUGACCCUCUAGCUAUAGAUACUGCCACUCCUCCUUUCCCCAUCCUUUUUUUCCCUUAGCACUAUUCAGUGCAAAAAGUGAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	67	214	531	569	589	649	723	734	870	893	991	1020	1184	1196	1405	1410
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A
Genomic Coordinates	15:43330516:-	15:43329617:-	15:43329300:-	15:43329262:-	15:43329242:-	15:43329182:-	15:43329108:-	15:43329097:-	15:43328961:-	15:43328938:-	15:43328840:-	15:43328811:-	15:43328647:-	15:43328635:-	15:43328426:-	15:43328421:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo aHkqKEJkRYyb Ap2q43bQLNek gZuvgwMuBfgh KRfQJWH4K5KH msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	3TeAZFYFxgvp aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	5FhTyQVy2tKW aHkqKEJkRYyb msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 Yfn77uLS5tv8	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	3TeAZFYFxgvp aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BsCW7emuRX7M Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	6AyXsheySjfx Ap2q43bQLNek gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	Ap2q43bQLNek msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8