General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000685689
Gene ID:	ENSG00000229931
Gene Name:	ATXN1-AS1
Sequence (UNICHARACTER ENCODING)	ACCCUUCGCUGCGCGCCGCCCGGGGAGGCGGGCACCUUUCCCAAAGAGUGGCUCGGGAUGGGGUGCGGGGGAGGGGAGACGCGGACCGGAGGGCAAGGUUCCUUCCAGGUCCGGAAAUCGGCUUUGAUAUGGAЖCUACUCCGCUCUAGCCUGGAAAGGAGACCCGCGCACUCCUCUCGCAGCUAAUUUCGGAUCAUUAAUUUAAUCGGAAAUGAGGUAACCAGUGUAGGAGACAGAGAAAGCAACCGGAGCAUCAAAUGGCAGUUCUCGAGAAUCGACGAGGAЖCUUAAAUCUGGЖCUCAGGGUUUCAGUGCGGUCUCCGACUCCCACCACCCCGCCCCUCCGCCUGUCUCGCCGCCAGGUGUGACCUCCACGCGAAGGAAUCUUCUUCGGAUGGGUGCACCUUGCCAACAGGUGUGGCACCUGGAGGЖCUAGGAGGCGCCUCCAGЖCUAAGGGCGCUCAGUGCGGCGUUCUUGUUGCAGAUGAUUCUGGAAGGCCGGUAGGUGUCGGGCGACAUUUGACCUUCUUCAGGUGCUUAGAЖCUAAGUGUCUGGAAACAUGAUCCUUUCGCGUAAGUUUCUUUCUGAAAGCCACCAAUCUUGЖCUGUAAGCUGUAUUUGAGAGAUCUUUUGGCUGAGUUUACUUAUGACCUAACGGUUAGUCACCAACUGAGGCAGGGCACAGGAUGACCAAAAAAAAAGUGUCAGUUUUUACACAACUCUGGCCUGCAAGAGCCUACGUGCUUCAUAAAUAAAAAUAAACAUACGAGCGAGGAAGGUGCAGAGCCCCGGAAAUAUUUUUUUCUCACAUUUUUGAAAUACCAUGCACAUAUAUGUGGCUAUUUAAGUAUAACUACUAGUGUUCACUCUUACUCAUUUCUACAACUUUUUUUUUUCCAUUUAAAAAUCGAUUAUUGUUACGGUUUAAACCUCGGGUUGGUCUAAAGUGACAUUGUUGGUCUCAUUACAGCCUCUAGUGGACAGUUAACAUCAGUUUCCUGAAAAGGCUCUGACUGGUUUUGUUUUCGUUGACAAGCUUUGUCAAGGUGAAGGUUAGUACGUAAGAGCAUAACCGGGUAAAAUGUCCCCUCACCCCUAUCCUCACCCCCGCCCCCAACACCCUGCUUGGCAAAGACGACUUCAGAAAGGAGCAGAAGCUUGUUGGCUUUAUAUAGAAAAGACGUAUGCUUUGUGCUGCAGGUAUUAUUAUUACUGGЖCUGUGAAUAAACAGAAAGCUUCUGCUAUUCA
Sequence (SHORT NAMES ENCODING)	ACCCUUCGCUGCGCGCCGCCCGGGGAGGCGGGCACCUUUCCCAAAGAGUGGCUCGGGAUGGGGUGCGGGGGAGGGGAGACGCGGACCGGAGGGCAAGGUUCCUUCCAGGUCCGGAAAUCGGCUUUGAUAUGGAm6ACUACUCCGCUCUAGCCUGGAAAGGAGACCCGCGCACUCCUCUCGCAGCUAAUUUCGGAUCAUUAAUUUAAUCGGAAAUGAGGUAACCAGUGUAGGAGACAGAGAAAGCAACCGGAGCAUCAAAUGGCAGUUCUCGAGAAUCGACGAGGAm6ACUUAAAUCUGGm6ACUCAGGGUUUCAGUGCGGUCUCCGACUCCCACCACCCCGCCCCUCCGCCUGUCUCGCCGCCAGGUGUGACCUCCACGCGAAGGAAUCUUCUUCGGAUGGGUGCACCUUGCCAACAGGUGUGGCACCUGGAGGm6ACUAGGAGGCGCCUCCAGm6ACUAAGGGCGCUCAGUGCGGCGUUCUUGUUGCAGAUGAUUCUGGAAGGCCGGUAGGUGUCGGGCGACAUUUGACCUUCUUCAGGUGCUUAGAm6ACUAAGUGUCUGGAAACAUGAUCCUUUCGCGUAAGUUUCUUUCUGAAAGCCACCAAUCUUGm6ACUGUAAGCUGUAUUUGAGAGAUCUUUUGGCUGAGUUUACUUAUGACCUAACGGUUAGUCACCAACUGAGGCAGGGCACAGGAUGACCAAAAAAAAAGUGUCAGUUUUUACACAACUCUGGCCUGCAAGAGCCUACGUGCUUCAUAAAUAAAAAUAAACAUACGAGCGAGGAAGGUGCAGAGCCCCGGAAAUAUUUUUUUCUCACAUUUUUGAAAUACCAUGCACAUAUAUGUGGCUAUUUAAGUAUAACUACUAGUGUUCACUCUUACUCAUUUCUACAACUUUUUUUUUUCCAUUUAAAAAUCGAUUAUUGUUACGGUUUAAACCUCGGGUUGGUCUAAAGUGACAUUGUUGGUCUCAUUACAGCCUCUAGUGGACAGUUAACAUCAGUUUCCUGAAAAGGCUCUGACUGGUUUUGUUUUCGUUGACAAGCUUUGUCAAGGUGAAGGUUAGUACGUAAGAGCAUAACCGGGUAAAAUGUCCCCUCACCCCUAUCCUCACCCCCGCCCCCAACACCCUGCUUGGCAAAGACGACUUCAGAAAGGAGCAGAAGCUUGUUGGCUUUAUAUAGAAAAGACGUAUGCUUUGUGCUGCAGGUAUUAUUAUUACUGGm6ACUGUGAAUAAACAGAAAGCUUCUGCUAUUCA
Sequence (MODOMICS CODE ENCODING)	ACCCUUCGCUGCGCGCCGCCCGGGGAGGCGGGCACCUUUCCCAAAGAGUGGCUCGGGAUGGGGUGCGGGGGAGGGGAGACGCGGACCGGAGGGCAAGGUUCCUUCCAGGUCCGGAAAUCGGCUUUGAUAUGGA2000000006ACUACUCCGCUCUAGCCUGGAAAGGAGACCCGCGCACUCCUCUCGCAGCUAAUUUCGGAUCAUUAAUUUAAUCGGAAAUGAGGUAACCAGUGUAGGAGACAGAGAAAGCAACCGGAGCAUCAAAUGGCAGUUCUCGAGAAUCGACGAGGA2000000006ACUUAAAUCUGG2000000006ACUCAGGGUUUCAGUGCGGUCUCCGACUCCCACCACCCCGCCCCUCCGCCUGUCUCGCCGCCAGGUGUGACCUCCACGCGAAGGAAUCUUCUUCGGAUGGGUGCACCUUGCCAACAGGUGUGGCACCUGGAGG2000000006ACUAGGAGGCGCCUCCAG2000000006ACUAAGGGCGCUCAGUGCGGCGUUCUUGUUGCAGAUGAUUCUGGAAGGCCGGUAGGUGUCGGGCGACAUUUGACCUUCUUCAGGUGCUUAGA2000000006ACUAAGUGUCUGGAAACAUGAUCCUUUCGCGUAAGUUUCUUUCUGAAAGCCACCAAUCUUG2000000006ACUGUAAGCUGUAUUUGAGAGAUCUUUUGGCUGAGUUUACUUAUGACCUAACGGUUAGUCACCAACUGAGGCAGGGCACAGGAUGACCAAAAAAAAAGUGUCAGUUUUUACACAACUCUGGCCUGCAAGAGCCUACGUGCUUCAUAAAUAAAAAUAAACAUACGAGCGAGGAAGGUGCAGAGCCCCGGAAAUAUUUUUUUCUCACAUUUUUGAAAUACCAUGCACAUAUAUGUGGCUAUUUAAGUAUAACUACUAGUGUUCACUCUUACUCAUUUCUACAACUUUUUUUUUUCCAUUUAAAAAUCGAUUAUUGUUACGGUUUAAACCUCGGGUUGGUCUAAAGUGACAUUGUUGGUCUCAUUACAGCCUCUAGUGGACAGUUAACAUCAGUUUCCUGAAAAGGCUCUGACUGGUUUUGUUUUCGUUGACAAGCUUUGUCAAGGUGAAGGUUAGUACGUAAGAGCAUAACCGGGUAAAAUGUCCCCUCACCCCUAUCCUCACCCCCGCCCCCAACACCCUGCUUGGCAAAGACGACUUCAGAAAGGAGCAGAAGCUUGUUGGCUUUAUAUAGAAAAGACGUAUGCUUUGUGCUGCAGGUAUUAUUAUUACUGG2000000006ACUGUGAAUAAACAGAAAGCUUCUGCUAUUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	134	284	296	429	447	539	600	1212
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	6:16762377:+	6:16762527:+	6:16762539:+	6:16762672:+	6:16762690:+	6:16762782:+	6:16762843:+	6:16763455:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo 6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn	6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo 6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	4HMi5ykupT9V 5Nnepx5V7yHo 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9	msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL Lny8GcCeVGc9	msuJfBpJvM5H VyCX26p5UBRL 93arJtwJmuS9