General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000316149
Gene ID:	ENSG00000123545
Gene Name:	NDUFAF4
Sequence (UNICHARACTER ENCODING)	ACUUGUGCGCAUGCUCCGGGUGUCCCGGAGUUGUCCUGCGCCGGUGUUCCCACGUGCGGCCUGAACCUGAGCGCAUAAUGUUAUGAGGAGAUGGGAGCACUAGUGAUUCGCGGUAUCAGGAAUUUCAACCUAGAGAЖCCGAGCGGAACGGGAAЖUCAGCAAGAUGAAGCCCUCUGUCGCUCCCAGACACCCCUCUACCAACAGCCUCCUGCGAGAGCAGAUUAGUCUCUAUCCAGAAGUUAAAGGAGAGAUUGCUCGUAAAGAUGAAAAGCUGCUGUCGUUUCUAAAAGAUGUGUAUGUUGAUUCCAAAGAUCCUGUGUCUUCCUUGCAGGUAAAAGCUGCUGAAACAUGUCAAGAGCCGAAGGAAUUCAGAUUGCCGAAAGACCAUCAUUUUGAUAUGAUAAAUAUUAAGAGCAUUCCCAAAGGCAAAAUUUCCAUUGUAGAAGCAUUGACACUUCUCAAUAAUCAUAAGCUUUUCCCAGAAACCUGGЖCUGCUGAGAAAAUAAUGCAGGAAUACCAGUUAGAЖCAGAAAGAUGUGAAUUCUCUUCUUAAAUAUUUUGUUACUUUUGAAGUCGAAAUCUUCCCUCCUGAAGACAAGAAAGCAAUACGAUCAAAAUGAAGAAAAUCACAGAAAUUUCCUAUGUGUACUCCUCAPCCCUCCUGCUGUAUAUUUUCUCAUUUUUUGCGUAAUAAAUUAUGUUAAUUACCAAAUAUUUAAUGCUCUCAUUGUGAGGGCAUACUCUUAAUAUUUAUUGAGCUCCCUGACUUUUCAAGAUUGCCAUAGAAUAUCUUUUGUUUUAUUUUAAUUUGGUUUAGGCAUAUUUCAUAAGUGCAUGUCAGCAUGACUGAGCACAUCUGUACCUUUAUUAUGGUGAAAGAGUUAAUUUGUUAUUUUAGGCACAUAUACCAACUUUUAAAUUGGUCAUAUUACCCCUUGGGAAAUGUCCUGAAUCCCUCAACUGAGUUUUACUUUCCAAGUUAGGUGUUUAGUUCAUUCUUCUCAUGCGAUAGUGAAAGUAAAAGCUUUCCUGACCCUUAAGACUGACAUUUUCUCGUUAGGGAAAGAGACUCGAUAGCAGGGUAGACUAACAGUAGUUCCCAAAUAAAGGCACACAGGAGAAAAUGAAUCAAUAGAAUCUAAUUAAAAUUACUACUCCAGGGAAUAAGAAGUAUUGAGGAUUUAUUUUAUUUUGAAUUGGUUUUAAGUAUGGAAUAAUUGUCUUUACAGUUAUAAAAAGUAAUUAGUGGUGUUUACAAAAUGUUGGGAAUUUCUGCUUUGACAGAUAGGUAAGUCCCAUGGGAAUUUCUGCUUUGACAAAUAGUUAAGUCCCAUGGCCUUCAGAGAGGCAGGAAGCAGAAACUUUCAAAAAAGUAACAUUUCUCUGGAUUUAAUGUGGAAAUAGAGAAAAAUUUAAAGAAUAAUUAAAAAACCAUGGUAGAUGAAAUUUGGUGAUUACAUAUAGUUUCGGAUGUUAAUGCUAGUUGAGAGAAGAGAAAAAGAUAGCAAGUAGAAGCAGAGAACAGGAUCAUUGGAAGGGACCUGAGAAAUUGCCAUUUCAUCCAUUUUAGCAAAUUUAAUUAGCAUAGCAUGUACCAGUACUAGGAUCUUGAGUGAGUGUGUGAGUUUAGCUCUGCCUAAUAUAUUACUACUUGGGGGAUCUUUGGGAGACUAUAUCUUCUUGGAGAUUGAGUUUCUUCUAUAAAAUAAGCAUAAUGCUACCCUAAAUGUAAGGGUUAUCAUGAAGAUAAAUAAUAAAGGACUACAAAGGACCAAGCAAAUAGGAAUUAUUUUUUGCGGUGGAGAAACAAGUGCCUGGGGAGAAUAUAUGACCGAAGAUUCUGUAGUUUAUGACUUAAЖCAGGCCCAGAAUUUAGUUUUUCAAAUCCUAGUAGUGUGUUUUUUCUGUCUUGCCAAAAAGCAGCACACCUCAAAGAAGGGAAAAGGUGUGAAUUGUGGGUAUAUUAGGGUUAUUAGUGCUUCCGAGGGAAGAUAGGCAUCACUACUUCCCAGAGAUGCCCCUGGAAAUGAUAUAGAGGAUGUUGAAGAAUUCAAUGUGAUGACGGAAUGAGGCAUUUGUAGUAAUGCUGAGAACAGAAAAAUGGЖCUAAGUGGAAAAUUUGUAAGCAUGACUUUGAAUGUAGAUUUGUUAUGUGAACAAACUACCUAGUUUAUUUUUAGUUCAAUACAAUAAUUGUUUUAAGAAAACAUGAAAUAACUACUCAAUAUAAAAUGCAUUUUAAAACUGUAAAUAAGUCAAAACUPUAUUCUUUUUAUCAUAAUGGUCACUAGCUGAGUCACAAAUACUAGUACACUCUUCUGAGCCAUCUUCUPUAUUCAUAUCUACAUUGUGUGGUUAGGCAUCUGUUAUGUGGUGUCACAUGAUAAAAUAAAGAACUUCUUCCCAUACCA
Sequence (SHORT NAMES ENCODING)	ACUUGUGCGCAUGCUCCGGGUGUCCCGGAGUUGUCCUGCGCCGGUGUUCCCACGUGCGGCCUGAACCUGAGCGCAUAAUGUUAUGAGGAGAUGGGAGCACUAGUGAUUCGCGGUAUCAGGAAUUUCAACCUAGAGAm6ACCGAGCGGAACGGGAAm6AUCAGCAAGAUGAAGCCCUCUGUCGCUCCCAGACACCCCUCUACCAACAGCCUCCUGCGAGAGCAGAUUAGUCUCUAUCCAGAAGUUAAAGGAGAGAUUGCUCGUAAAGAUGAAAAGCUGCUGUCGUUUCUAAAAGAUGUGUAUGUUGAUUCCAAAGAUCCUGUGUCUUCCUUGCAGGUAAAAGCUGCUGAAACAUGUCAAGAGCCGAAGGAAUUCAGAUUGCCGAAAGACCAUCAUUUUGAUAUGAUAAAUAUUAAGAGCAUUCCCAAAGGCAAAAUUUCCAUUGUAGAAGCAUUGACACUUCUCAAUAAUCAUAAGCUUUUCCCAGAAACCUGGm6ACUGCUGAGAAAAUAAUGCAGGAAUACCAGUUAGAm6ACAGAAAGAUGUGAAUUCUCUUCUUAAAUAUUUUGUUACUUUUGAAGUCGAAAUCUUCCCUCCUGAAGACAAGAAAGCAAUACGAUCAAAAUGAAGAAAAUCACAGAAAUUUCCUAUGUGUACUCCUCAYCCCUCCUGCUGUAUAUUUUCUCAUUUUUUGCGUAAUAAAUUAUGUUAAUUACCAAAUAUUUAAUGCUCUCAUUGUGAGGGCAUACUCUUAAUAUUUAUUGAGCUCCCUGACUUUUCAAGAUUGCCAUAGAAUAUCUUUUGUUUUAUUUUAAUUUGGUUUAGGCAUAUUUCAUAAGUGCAUGUCAGCAUGACUGAGCACAUCUGUACCUUUAUUAUGGUGAAAGAGUUAAUUUGUUAUUUUAGGCACAUAUACCAACUUUUAAAUUGGUCAUAUUACCCCUUGGGAAAUGUCCUGAAUCCCUCAACUGAGUUUUACUUUCCAAGUUAGGUGUUUAGUUCAUUCUUCUCAUGCGAUAGUGAAAGUAAAAGCUUUCCUGACCCUUAAGACUGACAUUUUCUCGUUAGGGAAAGAGACUCGAUAGCAGGGUAGACUAACAGUAGUUCCCAAAUAAAGGCACACAGGAGAAAAUGAAUCAAUAGAAUCUAAUUAAAAUUACUACUCCAGGGAAUAAGAAGUAUUGAGGAUUUAUUUUAUUUUGAAUUGGUUUUAAGUAUGGAAUAAUUGUCUUUACAGUUAUAAAAAGUAAUUAGUGGUGUUUACAAAAUGUUGGGAAUUUCUGCUUUGACAGAUAGGUAAGUCCCAUGGGAAUUUCUGCUUUGACAAAUAGUUAAGUCCCAUGGCCUUCAGAGAGGCAGGAAGCAGAAACUUUCAAAAAAGUAACAUUUCUCUGGAUUUAAUGUGGAAAUAGAGAAAAAUUUAAAGAAUAAUUAAAAAACCAUGGUAGAUGAAAUUUGGUGAUUACAUAUAGUUUCGGAUGUUAAUGCUAGUUGAGAGAAGAGAAAAAGAUAGCAAGUAGAAGCAGAGAACAGGAUCAUUGGAAGGGACCUGAGAAAUUGCCAUUUCAUCCAUUUUAGCAAAUUUAAUUAGCAUAGCAUGUACCAGUACUAGGAUCUUGAGUGAGUGUGUGAGUUUAGCUCUGCCUAAUAUAUUACUACUUGGGGGAUCUUUGGGAGACUAUAUCUUCUUGGAGAUUGAGUUUCUUCUAUAAAAUAAGCAUAAUGCUACCCUAAAUGUAAGGGUUAUCAUGAAGAUAAAUAAUAAAGGACUACAAAGGACCAAGCAAAUAGGAAUUAUUUUUUGCGGUGGAGAAACAAGUGCCUGGGGAGAAUAUAUGACCGAAGAUUCUGUAGUUUAUGACUUAAm6ACAGGCCCAGAAUUUAGUUUUUCAAAUCCUAGUAGUGUGUUUUUUCUGUCUUGCCAAAAAGCAGCACACCUCAAAGAAGGGAAAAGGUGUGAAUUGUGGGUAUAUUAGGGUUAUUAGUGCUUCCGAGGGAAGAUAGGCAUCACUACUUCCCAGAGAUGCCCCUGGAAAUGAUAUAGAGGAUGUUGAAGAAUUCAAUGUGAUGACGGAAUGAGGCAUUUGUAGUAAUGCUGAGAACAGAAAAAUGGm6ACUAAGUGGAAAAUUUGUAAGCAUGACUUUGAAUGUAGAUUUGUUAUGUGAACAAACUACCUAGUUUAUUUUUAGUUCAAUACAAUAAUUGUUUUAAGAAAACAUGAAAUAACUACUCAAUAUAAAAUGCAUUUUAAAACUGUAAAUAAGUCAAAACUYUAUUCUUUUUAUCAUAAUGGUCACUAGCUGAGUCACAAAUACUAGUACACUCUUCUGAGCCAUCUUCUYUAUUCAUAUCUACAUUGUGUGGUUAGGCAUCUGUUAUGUGGUGUCACAUGAUAAAAUAAAGAACUUCUUCCCAUACCA
Sequence (MODOMICS CODE ENCODING)	ACUUGUGCGCAUGCUCCGGGUGUCCCGGAGUUGUCCUGCGCCGGUGUUCCCACGUGCGGCCUGAACCUGAGCGCAUAAUGUUAUGAGGAGAUGGGAGCACUAGUGAUUCGCGGUAUCAGGAAUUUCAACCUAGAGA2000000006ACCGAGCGGAACGGGAA2000000006AUCAGCAAGAUGAAGCCCUCUGUCGCUCCCAGACACCCCUCUACCAACAGCCUCCUGCGAGAGCAGAUUAGUCUCUAUCCAGAAGUUAAAGGAGAGAUUGCUCGUAAAGAUGAAAAGCUGCUGUCGUUUCUAAAAGAUGUGUAUGUUGAUUCCAAAGAUCCUGUGUCUUCCUUGCAGGUAAAAGCUGCUGAAACAUGUCAAGAGCCGAAGGAAUUCAGAUUGCCGAAAGACCAUCAUUUUGAUAUGAUAAAUAUUAAGAGCAUUCCCAAAGGCAAAAUUUCCAUUGUAGAAGCAUUGACACUUCUCAAUAAUCAUAAGCUUUUCCCAGAAACCUGG2000000006ACUGCUGAGAAAAUAAUGCAGGAAUACCAGUUAGA2000000006ACAGAAAGAUGUGAAUUCUCUUCUUAAAUAUUUUGUUACUUUUGAAGUCGAAAUCUUCCCUCCUGAAGACAAGAAAGCAAUACGAUCAAAAUGAAGAAAAUCACAGAAAUUUCCUAUGUGUACUCCUCA2000000009UCCCUCCUGCUGUAUAUUUUCUCAUUUUUUGCGUAAUAAAUUAUGUUAAUUACCAAAUAUUUAAUGCUCUCAUUGUGAGGGCAUACUCUUAAUAUUUAUUGAGCUCCCUGACUUUUCAAGAUUGCCAUAGAAUAUCUUUUGUUUUAUUUUAAUUUGGUUUAGGCAUAUUUCAUAAGUGCAUGUCAGCAUGACUGAGCACAUCUGUACCUUUAUUAUGGUGAAAGAGUUAAUUUGUUAUUUUAGGCACAUAUACCAACUUUUAAAUUGGUCAUAUUACCCCUUGGGAAAUGUCCUGAAUCCCUCAACUGAGUUUUACUUUCCAAGUUAGGUGUUUAGUUCAUUCUUCUCAUGCGAUAGUGAAAGUAAAAGCUUUCCUGACCCUUAAGACUGACAUUUUCUCGUUAGGGAAAGAGACUCGAUAGCAGGGUAGACUAACAGUAGUUCCCAAAUAAAGGCACACAGGAGAAAAUGAAUCAAUAGAAUCUAAUUAAAAUUACUACUCCAGGGAAUAAGAAGUAUUGAGGAUUUAUUUUAUUUUGAAUUGGUUUUAAGUAUGGAAUAAUUGUCUUUACAGUUAUAAAAAGUAAUUAGUGGUGUUUACAAAAUGUUGGGAAUUUCUGCUUUGACAGAUAGGUAAGUCCCAUGGGAAUUUCUGCUUUGACAAAUAGUUAAGUCCCAUGGCCUUCAGAGAGGCAGGAAGCAGAAACUUUCAAAAAAGUAACAUUUCUCUGGAUUUAAUGUGGAAAUAGAGAAAAAUUUAAAGAAUAAUUAAAAAACCAUGGUAGAUGAAAUUUGGUGAUUACAUAUAGUUUCGGAUGUUAAUGCUAGUUGAGAGAAGAGAAAAAGAUAGCAAGUAGAAGCAGAGAACAGGAUCAUUGGAAGGGACCUGAGAAAUUGCCAUUUCAUCCAUUUUAGCAAAUUUAAUUAGCAUAGCAUGUACCAGUACUAGGAUCUUGAGUGAGUGUGUGAGUUUAGCUCUGCCUAAUAUAUUACUACUUGGGGGAUCUUUGGGAGACUAUAUCUUCUUGGAGAUUGAGUUUCUUCUAUAAAAUAAGCAUAAUGCUACCCUAAAUGUAAGGGUUAUCAUGAAGAUAAAUAAUAAAGGACUACAAAGGACCAAGCAAAUAGGAAUUAUUUUUUGCGGUGGAGAAACAAGUGCCUGGGGAGAAUAUAUGACCGAAGAUUCUGUAGUUUAUGACUUAA2000000006ACAGGCCCAGAAUUUAGUUUUUCAAAUCCUAGUAGUGUGUUUUUUCUGUCUUGCCAAAAAGCAGCACACCUCAAAGAAGGGAAAAGGUGUGAAUUGUGGGUAUAUUAGGGUUAUUAGUGCUUCCGAGGGAAGAUAGGCAUCACUACUUCCCAGAGAUGCCCCUGGAAAUGAUAUAGAGGAUGUUGAAGAAUUCAAUGUGAUGACGGAAUGAGGCAUUUGUAGUAAUGCUGAGAACAGAAAAAUGG2000000006ACUAAGUGGAAAAUUUGUAAGCAUGACUUUGAAUGUAGAUUUGUUAUGUGAACAAACUACCUAGUUUAUUUUUAGUUCAAUACAAUAAUUGUUUUAAGAAAACAUGAAAUAACUACUCAAUAUAAAAUGCAUUUUAAAACUGUAAAUAAGUCAAAACU2000000009UUAUUCUUUUUAUCAUAAUGGUCACUAGCUGAGUCACAAAUACUAGUACACUCUUCUGAGCCAUCUUCU2000000009UUAUUCAUAUCUACAUUGUGUGGUUAGGCAUCUGUUAUGUGGUGUCACAUGAUAAAAUAAAGAACUUCUUCCCAUACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	137	154	490	525	654	1857	2102	2260	2329
Modification Positions	m6A	m6A	m6A	m6A	Y	m6A	m6A	Y	Y
Genomic Coordinates	6:96897755:-	6:96897738:-	6:96891232:-	6:96891197:-	6:96891068:-	6:96889865:-	6:96889620:-	6:96889462:-	6:96889393:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq S9vNeQQYrhac	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac