General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000368662
Gene ID:	ENSG00000074935
Gene Name:	TUBE1
Sequence (UNICHARACTER ENCODING)	AGAAGCGGCCGCGGGCUAGCAAGCUCCCGGAGCCGGCGGCGCACCACCAUGACCCAGUCGGUGGUCGUACAGGUCGGCCAGUGCGGAAACCAGAUCGGCUGCUGCUUCUGGGACCUGGCACUAAGGGAGCACGCCGCGGUCAACCAGAAAGGAAUUUAUGAUGAGGCAAUAAGCAGCUUCUPUAGAAAUGUGGACACCAGAGUGGUUGGUGAUGGUGGAAGUAUUUCCAAGGGAAAAAUAUGUUCUPUAAAAGCACGAGCAGUCUUGAUUGAUAUGGAAGAAGGGGUAGUGAAUGAAAUUCUGCAGGGACCACUGAGAGAUGUAUUUGAUACGAAACAGCUCAUCACUGAUAUUUCUGGCUCAGGAAAUAAUUGGGCCGUGGGUCACAAAGUUUUCGGCAGUCUPUACCAAGACCAGAUUUUAGAGAAAUUCAGAAAGUCGGCAGAGCACUGUGAUUGCUUGCAGUGUUUCUPUAUAAUACAUUCCAUGGGAGGAGGAACAGGAUCUGGACUUGGCACAUUUCUUUUAAAGGUGCUUGAAGACGAAUUCCCAGAAGUAUACAGAUUUGUGACUUCCAUUUAUCCUUCUGGUGAGGAUGAUGUCAUAACCUCACCUUAUAAUAGCAUCUUGGCAAUGAAGGAACUUAAUGAGCAUGCAGACUGUGUAUUGCCCAUUGACAAUCAAUCUPUAUUUGACAUCAUUAGCAAAAUCGACCUCAUGGUGAAUUCUGGAAAGUUGGGUACAACUGUGAAGCCAAAGAGUCUGGUUACUUCAAGUUCUGGGGCUPUAAAAAAGCAGCAUAAGAAGCCCUUUGAUGCAAUGAAUAACAUUGUGGCAAAUUUGCUCCUCAACCUAACGAGCUCUGCAAGAUPUGAAGGGUCCCUUAAUAUGGACCUUAAUGAAAUCAGCAUGAAUUUAGUUCCUUUUCCUCAACUUCAUUAUCUCGUGUCAAGCCUAЖCACCUCUGUAUACACUGACAGAUGUUAACAUUCCPCCUAGAAGAUUGGAUCAGAUGUUUUCAGAUGCCUPUAGUAAAGAUCACCAGCUGCUUCGGGCAGACCCCAAACACAGUCUPUACCUCGCCUGUGCACUCAUGGUUAGAGGAAAUGUACAAAUUUCAGAUCUUCGUAGAAAUAUUGAAAGAUUAAAACCAUCUCUACAAUUUGUCUCCUGGAAUCAAGAAGGCUGGAAGACCAGCCUGUGUUCCGUACCUCCUGUGGGCCAUUCUCAUUCGUUAUUAGCUPUAGCAAAUAACACAUGUGUGAAGCCCACCUUCAUGGAACUGAAAGAGAGAUUCAUGAGGCUCUACAAGAAAAAGGCUCACCUUCAUCACUAUCUACAAGUUGAAGGGAUGGAAGAAAGCUGUUUCACAGAAGCUGUGUCAUCUPUAUCAGCACUCAUACAGGAAUAUGACCAACUGGACGCCACAAAAAACAUGCCUGUGCAGGAUUUACCCAGACUAAGCAUAGCUAUGUGAAAAAGAAACCCUCAAAAAUACUUUCUUAAUUUCACAUUGUUUUUUCUGACCUUUCUGUUUCAACAUUUUUGUAAUUUGGAAACUCCAGUUUUUUCAUAUUAUCGGGAAAUAUUUUUGUCUAAAAGAGUGAUUUCUGUUUAAUCGCAAUUUGUUGGUAAUACCAAUGUGUGAAAUUAGUGAAAUCUUAGUACCUUAЖCUUCAAACAUUUCUCUUCAGAAAAGUUCCCUUUUCUAAAAUUGAGAUAЖCAUAGUUCUUGAAUAUUUUGCUGUAUUUAUAGCCUCAUAUUUAGGCAUUUAUGCACUGAUGUGUCUUCAAUAAAAAUCUUGUACAGAUAUAUUUUUAUAAUUAUUUAUAAUUUAUAUUUUGAUAUUCUAUUUAAGUUAUCCUGAUUCUPUAAAAGUAGUUAUUGGGAGUAGAAGAACACAAUAUAAAUAUUUCCGUGUAAUAGCCACCAACUUUUCAGGCAUAGGUUUUAUUACAACUGUUAAGGAGGUUUUGCUUCUUCUPUAGAUAACAACUUGUUUGCCCAAAAGAAUCCUAAUUUGUACACUUAACAUGUAUUUGUAUUAAACUUUUUAAAUAAUUGCUUUCUUAUCAAACCAAUUGAUUUUAUAAUAAAUGUCUAUAUUUUUCAACAGUGCUACUUGUUAUUGUUCUGCAUGACAUUUAUGCAAAUGAACAGAAUGUUACUAAGCUUGAUAUCUUCCAAACUUUGCAAUAAAUGGCUAUAAUUGUUCCGGUUACUAUAA
Sequence (SHORT NAMES ENCODING)	AGAAGCGGCCGCGGGCUAGCAAGCUCCCGGAGCCGGCGGCGCACCACCAUGACCCAGUCGGUGGUCGUACAGGUCGGCCAGUGCGGAAACCAGAUCGGCUGCUGCUUCUGGGACCUGGCACUAAGGGAGCACGCCGCGGUCAACCAGAAAGGAAUUUAUGAUGAGGCAAUAAGCAGCUUCUYUAGAAAUGUGGACACCAGAGUGGUUGGUGAUGGUGGAAGUAUUUCCAAGGGAAAAAUAUGUUCUYUAAAAGCACGAGCAGUCUUGAUUGAUAUGGAAGAAGGGGUAGUGAAUGAAAUUCUGCAGGGACCACUGAGAGAUGUAUUUGAUACGAAACAGCUCAUCACUGAUAUUUCUGGCUCAGGAAAUAAUUGGGCCGUGGGUCACAAAGUUUUCGGCAGUCUYUACCAAGACCAGAUUUUAGAGAAAUUCAGAAAGUCGGCAGAGCACUGUGAUUGCUUGCAGUGUUUCUYUAUAAUACAUUCCAUGGGAGGAGGAACAGGAUCUGGACUUGGCACAUUUCUUUUAAAGGUGCUUGAAGACGAAUUCCCAGAAGUAUACAGAUUUGUGACUUCCAUUUAUCCUUCUGGUGAGGAUGAUGUCAUAACCUCACCUUAUAAUAGCAUCUUGGCAAUGAAGGAACUUAAUGAGCAUGCAGACUGUGUAUUGCCCAUUGACAAUCAAUCUYUAUUUGACAUCAUUAGCAAAAUCGACCUCAUGGUGAAUUCUGGAAAGUUGGGUACAACUGUGAAGCCAAAGAGUCUGGUUACUUCAAGUUCUGGGGCUYUAAAAAAGCAGCAUAAGAAGCCCUUUGAUGCAAUGAAUAACAUUGUGGCAAAUUUGCUCCUCAACCUAACGAGCUCUGCAAGAUYUGAAGGGUCCCUUAAUAUGGACCUUAAUGAAAUCAGCAUGAAUUUAGUUCCUUUUCCUCAACUUCAUUAUCUCGUGUCAAGCCUAm6ACACCUCUGUAUACACUGACAGAUGUUAACAUUCCYCCUAGAAGAUUGGAUCAGAUGUUUUCAGAUGCCUYUAGUAAAGAUCACCAGCUGCUUCGGGCAGACCCCAAACACAGUCUYUACCUCGCCUGUGCACUCAUGGUUAGAGGAAAUGUACAAAUUUCAGAUCUUCGUAGAAAUAUUGAAAGAUUAAAACCAUCUCUACAAUUUGUCUCCUGGAAUCAAGAAGGCUGGAAGACCAGCCUGUGUUCCGUACCUCCUGUGGGCCAUUCUCAUUCGUUAUUAGCUYUAGCAAAUAACACAUGUGUGAAGCCCACCUUCAUGGAACUGAAAGAGAGAUUCAUGAGGCUCUACAAGAAAAAGGCUCACCUUCAUCACUAUCUACAAGUUGAAGGGAUGGAAGAAAGCUGUUUCACAGAAGCUGUGUCAUCUYUAUCAGCACUCAUACAGGAAUAUGACCAACUGGACGCCACAAAAAACAUGCCUGUGCAGGAUUUACCCAGACUAAGCAUAGCUAUGUGAAAAAGAAACCCUCAAAAAUACUUUCUUAAUUUCACAUUGUUUUUUCUGACCUUUCUGUUUCAACAUUUUUGUAAUUUGGAAACUCCAGUUUUUUCAUAUUAUCGGGAAAUAUUUUUGUCUAAAAGAGUGAUUUCUGUUUAAUCGCAAUUUGUUGGUAAUACCAAUGUGUGAAAUUAGUGAAAUCUUAGUACCUUAm6ACUUCAAACAUUUCUCUUCAGAAAAGUUCCCUUUUCUAAAAUUGAGAUAm6ACAUAGUUCUUGAAUAUUUUGCUGUAUUUAUAGCCUCAUAUUUAGGCAUUUAUGCACUGAUGUGUCUUCAAUAAAAAUCUUGUACAGAUAUAUUUUUAUAAUUAUUUAUAAUUUAUAUUUUGAUAUUCUAUUUAAGUUAUCCUGAUUCUYUAAAAGUAGUUAUUGGGAGUAGAAGAACACAAUAUAAAUAUUUCCGUGUAAUAGCCACCAACUUUUCAGGCAUAGGUUUUAUUACAACUGUUAAGGAGGUUUUGCUUCUUCUYUAGAUAACAACUUGUUUGCCCAAAAGAAUCCUAAUUUGUACACUUAACAUGUAUUUGUAUUAAACUUUUUAAAUAAUUGCUUUCUUAUCAAACCAAUUGAUUUUAUAAUAAAUGUCUAUAUUUUUCAACAGUGCUACUUGUUAUUGUUCUGCAUGACAUUUAUGCAAAUGAACAGAAUGUUACUAAGCUUGAUAUCUUCCAAACUUUGCAAUAAAUGGCUAUAAUUGUUCCGGUUACUAUAA
Sequence (MODOMICS CODE ENCODING)	AGAAGCGGCCGCGGGCUAGCAAGCUCCCGGAGCCGGCGGCGCACCACCAUGACCCAGUCGGUGGUCGUACAGGUCGGCCAGUGCGGAAACCAGAUCGGCUGCUGCUUCUGGGACCUGGCACUAAGGGAGCACGCCGCGGUCAACCAGAAAGGAAUUUAUGAUGAGGCAAUAAGCAGCUUCU2000000009UUAGAAAUGUGGACACCAGAGUGGUUGGUGAUGGUGGAAGUAUUUCCAAGGGAAAAAUAUGUUCU2000000009UUAAAAGCACGAGCAGUCUUGAUUGAUAUGGAAGAAGGGGUAGUGAAUGAAAUUCUGCAGGGACCACUGAGAGAUGUAUUUGAUACGAAACAGCUCAUCACUGAUAUUUCUGGCUCAGGAAAUAAUUGGGCCGUGGGUCACAAAGUUUUCGGCAGUCU2000000009UUACCAAGACCAGAUUUUAGAGAAAUUCAGAAAGUCGGCAGAGCACUGUGAUUGCUUGCAGUGUUUCU2000000009UUAUAAUACAUUCCAUGGGAGGAGGAACAGGAUCUGGACUUGGCACAUUUCUUUUAAAGGUGCUUGAAGACGAAUUCCCAGAAGUAUACAGAUUUGUGACUUCCAUUUAUCCUUCUGGUGAGGAUGAUGUCAUAACCUCACCUUAUAAUAGCAUCUUGGCAAUGAAGGAACUUAAUGAGCAUGCAGACUGUGUAUUGCCCAUUGACAAUCAAUCU2000000009UUAUUUGACAUCAUUAGCAAAAUCGACCUCAUGGUGAAUUCUGGAAAGUUGGGUACAACUGUGAAGCCAAAGAGUCUGGUUACUUCAAGUUCUGGGGCU2000000009UUAAAAAAGCAGCAUAAGAAGCCCUUUGAUGCAAUGAAUAACAUUGUGGCAAAUUUGCUCCUCAACCUAACGAGCUCUGCAAGAU2000000009UUGAAGGGUCCCUUAAUAUGGACCUUAAUGAAAUCAGCAUGAAUUUAGUUCCUUUUCCUCAACUUCAUUAUCUCGUGUCAAGCCUA2000000006ACACCUCUGUAUACACUGACAGAUGUUAACAUUCC2000000009UCCUAGAAGAUUGGAUCAGAUGUUUUCAGAUGCCU2000000009UUAGUAAAGAUCACCAGCUGCUUCGGGCAGACCCCAAACACAGUCU2000000009UUACCUCGCCUGUGCACUCAUGGUUAGAGGAAAUGUACAAAUUUCAGAUCUUCGUAGAAAUAUUGAAAGAUUAAAACCAUCUCUACAAUUUGUCUCCUGGAAUCAAGAAGGCUGGAAGACCAGCCUGUGUUCCGUACCUCCUGUGGGCCAUUCUCAUUCGUUAUUAGCU2000000009UUAGCAAAUAACACAUGUGUGAAGCCCACCUUCAUGGAACUGAAAGAGAGAUUCAUGAGGCUCUACAAGAAAAAGGCUCACCUUCAUCACUAUCUACAAGUUGAAGGGAUGGAAGAAAGCUGUUUCACAGAAGCUGUGUCAUCU2000000009UUAUCAGCACUCAUACAGGAAUAUGACCAACUGGACGCCACAAAAAACAUGCCUGUGCAGGAUUUACCCAGACUAAGCAUAGCUAUGUGAAAAAGAAACCCUCAAAAAUACUUUCUUAAUUUCACAUUGUUUUUUCUGACCUUUCUGUUUCAACAUUUUUGUAAUUUGGAAACUCCAGUUUUUUCAUAUUAUCGGGAAAUAUUUUUGUCUAAAAGAGUGAUUUCUGUUUAAUCGCAAUUUGUUGGUAAUACCAAUGUGUGAAAUUAGUGAAAUCUUAGUACCUUA2000000006ACUUCAAACAUUUCUCUUCAGAAAAGUUCCCUUUUCUAAAAUUGAGAUA2000000006ACAUAGUUCUUGAAUAUUUUGCUGUAUUUAUAGCCUCAUAUUUAGGCAUUUAUGCACUGAUGUGUCUUCAAUAAAAAUCUUGUACAGAUAUAUUUUUAUAAUUAUUUAUAAUUUAUAUUUUGAUAUUCUAUUUAAGUUAUCCUGAUUCU2000000009UUAAAAGUAGUUAUUGGGAGUAGAAGAACACAAUAUAAAUAUUUCCGUGUAAUAGCCACCAACUUUUCAGGCAUAGGUUUUAUUACAACUGUUAAGGAGGUUUUGCUUCUUCU2000000009UUAGAUAACAACUUGUUUGCCCAAAAGAAUCCUAAUUUGUACACUUAACAUGUAUUUGUAUUAAACUUUUUAAAUAAUUGCUUUCUUAUCAAACCAAUUGAUUUUAUAAUAAAUGUCUAUAUUUUUCAACAGUGCUACUUGUUAUUGUUCUGCAUGACAUUUAUGCAAAUGAACAGAAUGUUACUAAGCUUGAUAUCUUCCAAACUUUGCAAUAAAUGGCUAUAAUUGUUCCGGUUACUAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	182	247	405	473	688	787	872	958	993	1028	1074	1243	1387	1672	1721	1870	1983
Modification Positions	Y	Y	Y	Y	Y	Y	Y	m6A	Y	Y	Y	Y	Y	m6A	m6A	Y	Y
Genomic Coordinates	6:112086574:-	6:112084200:-	6:112079724:-	6:112079656:-	6:112076109:-	6:112076010:-	6:112074839:-	6:112074753:-	6:112074718:-	6:112072872:-	6:112072826:-	6:112071976:-	6:112071501:-	6:112071216:-	6:112071167:-	6:112071018:-	6:112070905:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq S9vNeQQYrhac Yfn77uLS5tv8