Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000610153
Gene ID: ENSG00000118518
Gene Name: RNF146
Sequence (UNICHARACTER ENCODING) AGAGAGAAAAGACUGCGAGGUGGCCGCAGCUGUGGCCGGAGAGGUGGGAGUCGGAGCGAGGCCCUCUCGGGGGAGCAGGGUGAACGCCGGCCACUCUAGGAUCCUCACUCGGGGAGAGGAGGCAUAGCUCGCGGUGUCACCUCCAGCCGCAACGUACUCCGGGUCGGCCUUGCGCUCGGGGCCUGAGAGGGGCGGCGGCGGGGUCAGGGGCCGCACAAAGAAUGAACCAGCAGUGGAAGAGAAAAUACUGUAAGCUGGCUGACUGCUGGUGAAGAAAAUGCUUUAUUUUUGUGGCAGGCAUCUGUGGGAUCUGUAAUAGAAAUGAUGGCUGGCUGUGGUGAAAUUGAUCAUUCAAUAAACAUGCUUCCUACAAACAGGAAAGCGAACGAGUCCUGUUCUAAUACUGCACCUUCUPUAACCGUCCCUGAAUGUGCCAUUUGUCUGCAAACAUGUGUUCAUCCAGUCAGUCUGCCCUGUAAGCACGUUUUCUGCUAUCUAUGUGUAAAAGGAGCUUCAUGGCUUGGAAAGCGGUGUGCUCUUUGUCGACAAGAAAUUCCCGAGGAUUUCCUUGACAAGCCAACCUUGUUGUCACCAGAAGAЖCUCAAGGCAGCAAGUAGAGGAAAUGGUGAAUAUGCAUGGUAUUAUGAAGGAAGAAAUGGGUGGUGGCAGUACGAUGAGCGCACUAGUAGAGAGCUGGAAGAUGCUUUUUCCAAAGGUAAAAAGAЖCACUGAAAUGUUAAUUGCUGGCUUUCUGUAUGUCGCUGAUCUUGAAAACAUGGUUCAAUAUAGGAGAAAUGAЖCAUGGЖCGUCGCAGGAAGAUUAAGCGAGAUAUAAUAGAUAUACCAAAGAAGGGAGUAGCUGGЖCUUAGGCUAGЖCUGUGAUGCUAAUACCGUAAЖCCUAGCAAGAGAGAGCUCUGCUGACGGAGCGGЖCAGUGUAUCAGCACAGAGUGGAGCUUCUGUUCAGCCCCUAGUGUCUUCUGUAAGGCCCCUAЖCAUCAGUAGAUGGUCAGUUAЖCAAGCCCUGCAACACCAUCCCCUGAUGCAAGCACUUCUCUGGAAGЖCUCUUUUGCUCAUUUACAACUCAGUGGAGACAACACAGCUGAAAGGAGUCAUAGGGGAGAAGGAGAAGAAGAUCAUGAAUCACCAUCUUCAGGCAGGGUACCAGCACCAGACACCUCCAUUGAAGAAЖCUGAAUCAGAUGCCAGUAGUGAUAGUGAGGAUGUAUCUGCAGUUGUUGCACAGCACUCCUUGACCCAACAGAGЖCUUUUGGUUUCUAAUGCAAACCAGACAGUACCCGAUCGAUCAGAUCGAUCGGGAACUGAUCGAUCAGUAGCAGGGGGUGGAACAGUGAGUGUCAGUGUCAGAUCUAGAAGGCCUGAUGGЖCAGUGCACAGUAACUGAAGUUUAAAUAAAAAUGUCUUCAGCUCCAUGCUCAAGGUUGAAAGGGUUACCUGUAAAUUUCUGCCCACAUAACAUUAUACUCAUCCCUAGUAGUGCAUUUUGGGAGUUGGGGUGGGAAGGGGUAUGGGAAGGAUAGACUCAUAAUUAAAAUGUCUAACAUGUCUCUGUUGAGAAAUUUAUUUAAUGUAAGGAACUUGGGUGUUAAUAGUUGAGAGCUGUUUAGUAAUAACCCAGUUUUCUUGAGGUCUGUUUACUPUAUACUUUUUAAAAACUUCUGUAGUUCUUUUGGCCAGUGUGUUUGUAUUAUCUGUGCAUUAAUGGUCCUCAUCUGACUCCUGCAUUGUGUCUUAUUUUUCUGCAUGGAUUGGCAUAAGACCAUUACUAAAAUUUGGCACCUGUGAGAUGUUUGAUAUUAUGAACAGGAAACAUAAUUUAAUGUAUGAAUAGAUGUGAAUUUGGGAUUUCAAAAUAGAUGAAUAACAACUAUUUUAUAGUAAAGUUAUUGAAAUGGAAAUGAAAACAGCCAGUAЖCUUAUGUUUCAGAAUGUUUGUAACACACUUCAUGGUGUUCCCAUAGGCUUUGCUGUCUAGUCUUAUAGUUUGAGGUUUUUUUGGUCUGCAUUUUUCUUUUUGAUUACAAAAUUUAUAAUUUAAUAAAUACUAGAGUUUAUCAAAAA
Sequence (SHORT NAMES ENCODING) AGAGAGAAAAGACUGCGAGGUGGCCGCAGCUGUGGCCGGAGAGGUGGGAGUCGGAGCGAGGCCCUCUCGGGGGAGCAGGGUGAACGCCGGCCACUCUAGGAUCCUCACUCGGGGAGAGGAGGCAUAGCUCGCGGUGUCACCUCCAGCCGCAACGUACUCCGGGUCGGCCUUGCGCUCGGGGCCUGAGAGGGGCGGCGGCGGGGUCAGGGGCCGCACAAAGAAUGAACCAGCAGUGGAAGAGAAAAUACUGUAAGCUGGCUGACUGCUGGUGAAGAAAAUGCUUUAUUUUUGUGGCAGGCAUCUGUGGGAUCUGUAAUAGAAAUGAUGGCUGGCUGUGGUGAAAUUGAUCAUUCAAUAAACAUGCUUCCUACAAACAGGAAAGCGAACGAGUCCUGUUCUAAUACUGCACCUUCUYUAACCGUCCCUGAAUGUGCCAUUUGUCUGCAAACAUGUGUUCAUCCAGUCAGUCUGCCCUGUAAGCACGUUUUCUGCUAUCUAUGUGUAAAAGGAGCUUCAUGGCUUGGAAAGCGGUGUGCUCUUUGUCGACAAGAAAUUCCCGAGGAUUUCCUUGACAAGCCAACCUUGUUGUCACCAGAAGAm6ACUCAAGGCAGCAAGUAGAGGAAAUGGUGAAUAUGCAUGGUAUUAUGAAGGAAGAAAUGGGUGGUGGCAGUACGAUGAGCGCACUAGUAGAGAGCUGGAAGAUGCUUUUUCCAAAGGUAAAAAGAm6ACACUGAAAUGUUAAUUGCUGGCUUUCUGUAUGUCGCUGAUCUUGAAAACAUGGUUCAAUAUAGGAGAAAUGAm6ACAUGGm6ACGUCGCAGGAAGAUUAAGCGAGAUAUAAUAGAUAUACCAAAGAAGGGAGUAGCUGGm6ACUUAGGCUAGm6ACUGUGAUGCUAAUACCGUAAm6ACCUAGCAAGAGAGAGCUCUGCUGACGGAGCGGm6ACAGUGUAUCAGCACAGAGUGGAGCUUCUGUUCAGCCCCUAGUGUCUUCUGUAAGGCCCCUAm6ACAUCAGUAGAUGGUCAGUUAm6ACAAGCCCUGCAACACCAUCCCCUGAUGCAAGCACUUCUCUGGAAGm6ACUCUUUUGCUCAUUUACAACUCAGUGGAGACAACACAGCUGAAAGGAGUCAUAGGGGAGAAGGAGAAGAAGAUCAUGAAUCACCAUCUUCAGGCAGGGUACCAGCACCAGACACCUCCAUUGAAGAAm6ACUGAAUCAGAUGCCAGUAGUGAUAGUGAGGAUGUAUCUGCAGUUGUUGCACAGCACUCCUUGACCCAACAGAGm6ACUUUUGGUUUCUAAUGCAAACCAGACAGUACCCGAUCGAUCAGAUCGAUCGGGAACUGAUCGAUCAGUAGCAGGGGGUGGAACAGUGAGUGUCAGUGUCAGAUCUAGAAGGCCUGAUGGm6ACAGUGCACAGUAACUGAAGUUUAAAUAAAAAUGUCUUCAGCUCCAUGCUCAAGGUUGAAAGGGUUACCUGUAAAUUUCUGCCCACAUAACAUUAUACUCAUCCCUAGUAGUGCAUUUUGGGAGUUGGGGUGGGAAGGGGUAUGGGAAGGAUAGACUCAUAAUUAAAAUGUCUAACAUGUCUCUGUUGAGAAAUUUAUUUAAUGUAAGGAACUUGGGUGUUAAUAGUUGAGAGCUGUUUAGUAAUAACCCAGUUUUCUUGAGGUCUGUUUACUYUAUACUUUUUAAAAACUUCUGUAGUUCUUUUGGCCAGUGUGUUUGUAUUAUCUGUGCAUUAAUGGUCCUCAUCUGACUCCUGCAUUGUGUCUUAUUUUUCUGCAUGGAUUGGCAUAAGACCAUUACUAAAAUUUGGCACCUGUGAGAUGUUUGAUAUUAUGAACAGGAAACAUAAUUUAAUGUAUGAAUAGAUGUGAAUUUGGGAUUUCAAAAUAGAUGAAUAACAACUAUUUUAUAGUAAAGUUAUUGAAAUGGAAAUGAAAACAGCCAGUAm6ACUUAUGUUUCAGAAUGUUUGUAACACACUUCAUGGUGUUCCCAUAGGCUUUGCUGUCUAGUCUUAUAGUUUGAGGUUUUUUUGGUCUGCAUUUUUCUUUUUGAUUACAAAAUUUAUAAUUUAAUAAAUACUAGAGUUUAUCAAAAA
Sequence (MODOMICS CODE ENCODING) AGAGAGAAAAGACUGCGAGGUGGCCGCAGCUGUGGCCGGAGAGGUGGGAGUCGGAGCGAGGCCCUCUCGGGGGAGCAGGGUGAACGCCGGCCACUCUAGGAUCCUCACUCGGGGAGAGGAGGCAUAGCUCGCGGUGUCACCUCCAGCCGCAACGUACUCCGGGUCGGCCUUGCGCUCGGGGCCUGAGAGGGGCGGCGGCGGGGUCAGGGGCCGCACAAAGAAUGAACCAGCAGUGGAAGAGAAAAUACUGUAAGCUGGCUGACUGCUGGUGAAGAAAAUGCUUUAUUUUUGUGGCAGGCAUCUGUGGGAUCUGUAAUAGAAAUGAUGGCUGGCUGUGGUGAAAUUGAUCAUUCAAUAAACAUGCUUCCUACAAACAGGAAAGCGAACGAGUCCUGUUCUAAUACUGCACCUUCU2000000009UUAACCGUCCCUGAAUGUGCCAUUUGUCUGCAAACAUGUGUUCAUCCAGUCAGUCUGCCCUGUAAGCACGUUUUCUGCUAUCUAUGUGUAAAAGGAGCUUCAUGGCUUGGAAAGCGGUGUGCUCUUUGUCGACAAGAAAUUCCCGAGGAUUUCCUUGACAAGCCAACCUUGUUGUCACCAGAAGA2000000006ACUCAAGGCAGCAAGUAGAGGAAAUGGUGAAUAUGCAUGGUAUUAUGAAGGAAGAAAUGGGUGGUGGCAGUACGAUGAGCGCACUAGUAGAGAGCUGGAAGAUGCUUUUUCCAAAGGUAAAAAGA2000000006ACACUGAAAUGUUAAUUGCUGGCUUUCUGUAUGUCGCUGAUCUUGAAAACAUGGUUCAAUAUAGGAGAAAUGA2000000006ACAUGG2000000006ACGUCGCAGGAAGAUUAAGCGAGAUAUAAUAGAUAUACCAAAGAAGGGAGUAGCUGG2000000006ACUUAGGCUAG2000000006ACUGUGAUGCUAAUACCGUAA2000000006ACCUAGCAAGAGAGAGCUCUGCUGACGGAGCGG2000000006ACAGUGUAUCAGCACAGAGUGGAGCUUCUGUUCAGCCCCUAGUGUCUUCUGUAAGGCCCCUA2000000006ACAUCAGUAGAUGGUCAGUUA2000000006ACAAGCCCUGCAACACCAUCCCCUGAUGCAAGCACUUCUCUGGAAG2000000006ACUCUUUUGCUCAUUUACAACUCAGUGGAGACAACACAGCUGAAAGGAGUCAUAGGGGAGAAGGAGAAGAAGAUCAUGAAUCACCAUCUUCAGGCAGGGUACCAGCACCAGACACCUCCAUUGAAGAA2000000006ACUGAAUCAGAUGCCAGUAGUGAUAGUGAGGAUGUAUCUGCAGUUGUUGCACAGCACUCCUUGACCCAACAGAG2000000006ACUUUUGGUUUCUAAUGCAAACCAGACAGUACCCGAUCGAUCAGAUCGAUCGGGAACUGAUCGAUCAGUAGCAGGGGGUGGAACAGUGAGUGUCAGUGUCAGAUCUAGAAGGCCUGAUGG2000000006ACAGUGCACAGUAACUGAAGUUUAAAUAAAAAUGUCUUCAGCUCCAUGCUCAAGGUUGAAAGGGUUACCUGUAAAUUUCUGCCCACAUAACAUUAUACUCAUCCCUAGUAGUGCAUUUUGGGAGUUGGGGUGGGAAGGGGUAUGGGAAGGAUAGACUCAUAAUUAAAAUGUCUAACAUGUCUCUGUUGAGAAAUUUAUUUAAUGUAAGGAACUUGGGUGUUAAUAGUUGAGAGCUGUUUAGUAAUAACCCAGUUUUCUUGAGGUCUGUUUACU2000000009UUAUACUUUUUAAAAACUUCUGUAGUUCUUUUGGCCAGUGUGUUUGUAUUAUCUGUGCAUUAAUGGUCCUCAUCUGACUCCUGCAUUGUGUCUUAUUUUUCUGCAUGGAUUGGCAUAAGACCAUUACUAAAAUUUGGCACCUGUGAGAUGUUUGAUAUUAUGAACAGGAAACAUAAUUUAAUGUAUGAAUAGAUGUGAAUUUGGGAUUUCAAAAUAGAUGAAUAACAACUAUUUUAUAGUAAAGUUAUUGAAAUGGAAAUGAAAACAGCCAGUA2000000006ACUUAUGUUUCAGAAUGUUUGUAACACACUUCAUGGUGUUCCCAUAGGCUUUGCUGUCUAGUCUUAUAGUUUGAGGUUUUUUUGGUCUGCAUUUUUCUUUUUGAUUACAAAAUUUAUAAUUUAAUAAAUACUAGAGUUUAUCAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 415 600 725 798 804 861 872 893 926 988 1009 1055 1183 1257 1377 1650 1924
Modification Positions Y m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A Y m6A
Genomic Coordinates 6:127286707:+ 6:127286892:+ 6:127287017:+ 6:127287090:+ 6:127287096:+ 6:127287153:+ 6:127287164:+ 6:127287185:+ 6:127287218:+ 6:127287280:+ 6:127287301:+ 6:127287347:+ 6:127287475:+ 6:127287549:+ 6:127287669:+ 6:127287942:+ 6:127288216:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
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