Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000483998
Gene ID: ENSG00000146223
Gene Name: RPL7L1
Sequence (UNICHARACTER ENCODING) AGCUAGGAGCGGACGCCAUAGGUGCAUUGUGGGAAGCACUUUGCUGUCCACAGCCAGGCCGCUUGUGAUGAAACUGUAACUUACAAGAAAAGGGCUGGGUUUUGAAAAUAACACAGGCUCUAAAAACCCUAAGAAGCGGUGCAACUUUUGGCAGGAAUCGGGGUUAGCGGGACCUCAAGGGCUCACUGCGGCUAAGUGAACGCUGACUGGUCCUCCAGCGUGAGCUAGAACAGACGUCUCUAUGGUCAAGUAAACAGAGCGUGUGCUGUCUUCCCCAUGUGGUGGGGUUGCGCAUGAUCAGUAGCUGCACCACUAGAAAGAUGGCGGAGCAAGACAGAAGAAAGGAAAAGGGCUCAGGUUUAAGCGACUGGAAUCAUUCCUACAUGAUUCCUGGCGGCAGAAACGUGACAAGGUGCGUCUCAGACGACUAGAAGUGAAACCUCAUGCCUUGGAAUUGCCAGAUAAACAUUCCUUGGCCUUUGUUGUACGCAUCGAAAGGAUUGACGGCGUGAGUUUACUGGUGCAGAGAACCAUUGCAAGЖCUUCGCCUAAAGAAAAUUUUUAGUGGUGUCUUUGUAAAAGUCACCCCCCAGAAUCUAAAAAUGCUGCGUAUAGUGGAACCUUAUGUGACCUGGGGAUUUCCAAAUCUGAAGUCUGUCCGAGAACUCAUUUUGAAACGUGGACAAGCCAAGGUCAAGAAUAAGACCAUCCCUCUGACAGЖCAAUACAGUGAUUGAGGAGCACCUGGGGAAGUUUGGCGUCAUUUGCUUGGAAGACCUCAUUCAUGAAAUUGCCUUCCCAGGGAAGCAUUUCCAGGAGAUCUCAUGGUUCUUGUGCCCUUUCCACCUCUCAGUGGCCCGUCAUGCUACCAAAAAUAGAGUGGGCUUCCUCAAGGAGAUGGGCACACCUGGCUAUCGGGGUGAACGCAUCAAUCAGCUCAPCCGUCAGCUGAACUAGЖCCCAGGUGCCAAACUGCGGUAAAUUUUUUAUCAGUGAAGUGGAAGCAUGUGUUUUGUUUUGGAAAUUUUUAUCAAGUAUCUUCAGAGAAGAUUAUUUCCUGCUPUAUCUUCAGAAЖCUGGAAAGGGUCAAAGAAAAGЖCAGUAGCUG
Sequence (SHORT NAMES ENCODING) AGCUAGGAGCGGACGCCAUAGGUGCAUUGUGGGAAGCACUUUGCUGUCCACAGCCAGGCCGCUUGUGAUGAAACUGUAACUUACAAGAAAAGGGCUGGGUUUUGAAAAUAACACAGGCUCUAAAAACCCUAAGAAGCGGUGCAACUUUUGGCAGGAAUCGGGGUUAGCGGGACCUCAAGGGCUCACUGCGGCUAAGUGAACGCUGACUGGUCCUCCAGCGUGAGCUAGAACAGACGUCUCUAUGGUCAAGUAAACAGAGCGUGUGCUGUCUUCCCCAUGUGGUGGGGUUGCGCAUGAUCAGUAGCUGCACCACUAGAAAGAUGGCGGAGCAAGACAGAAGAAAGGAAAAGGGCUCAGGUUUAAGCGACUGGAAUCAUUCCUACAUGAUUCCUGGCGGCAGAAACGUGACAAGGUGCGUCUCAGACGACUAGAAGUGAAACCUCAUGCCUUGGAAUUGCCAGAUAAACAUUCCUUGGCCUUUGUUGUACGCAUCGAAAGGAUUGACGGCGUGAGUUUACUGGUGCAGAGAACCAUUGCAAGm6ACUUCGCCUAAAGAAAAUUUUUAGUGGUGUCUUUGUAAAAGUCACCCCCCAGAAUCUAAAAAUGCUGCGUAUAGUGGAACCUUAUGUGACCUGGGGAUUUCCAAAUCUGAAGUCUGUCCGAGAACUCAUUUUGAAACGUGGACAAGCCAAGGUCAAGAAUAAGACCAUCCCUCUGACAGm6ACAAUACAGUGAUUGAGGAGCACCUGGGGAAGUUUGGCGUCAUUUGCUUGGAAGACCUCAUUCAUGAAAUUGCCUUCCCAGGGAAGCAUUUCCAGGAGAUCUCAUGGUUCUUGUGCCCUUUCCACCUCUCAGUGGCCCGUCAUGCUACCAAAAAUAGAGUGGGCUUCCUCAAGGAGAUGGGCACACCUGGCUAUCGGGGUGAACGCAUCAAUCAGCUCAYCCGUCAGCUGAACUAGm6ACCCAGGUGCCAAACUGCGGUAAAUUUUUUAUCAGUGAAGUGGAAGCAUGUGUUUUGUUUUGGAAAUUUUUAUCAAGUAUCUUCAGAGAAGAUUAUUUCCUGCUYUAUCUUCAGAAm6ACUGGAAAGGGUCAAAGAAAAGm6ACAGUAGCUG
Sequence (MODOMICS CODE ENCODING) AGCUAGGAGCGGACGCCAUAGGUGCAUUGUGGGAAGCACUUUGCUGUCCACAGCCAGGCCGCUUGUGAUGAAACUGUAACUUACAAGAAAAGGGCUGGGUUUUGAAAAUAACACAGGCUCUAAAAACCCUAAGAAGCGGUGCAACUUUUGGCAGGAAUCGGGGUUAGCGGGACCUCAAGGGCUCACUGCGGCUAAGUGAACGCUGACUGGUCCUCCAGCGUGAGCUAGAACAGACGUCUCUAUGGUCAAGUAAACAGAGCGUGUGCUGUCUUCCCCAUGUGGUGGGGUUGCGCAUGAUCAGUAGCUGCACCACUAGAAAGAUGGCGGAGCAAGACAGAAGAAAGGAAAAGGGCUCAGGUUUAAGCGACUGGAAUCAUUCCUACAUGAUUCCUGGCGGCAGAAACGUGACAAGGUGCGUCUCAGACGACUAGAAGUGAAACCUCAUGCCUUGGAAUUGCCAGAUAAACAUUCCUUGGCCUUUGUUGUACGCAUCGAAAGGAUUGACGGCGUGAGUUUACUGGUGCAGAGAACCAUUGCAAG2000000006ACUUCGCCUAAAGAAAAUUUUUAGUGGUGUCUUUGUAAAAGUCACCCCCCAGAAUCUAAAAAUGCUGCGUAUAGUGGAACCUUAUGUGACCUGGGGAUUUCCAAAUCUGAAGUCUGUCCGAGAACUCAUUUUGAAACGUGGACAAGCCAAGGUCAAGAAUAAGACCAUCCCUCUGACAG2000000006ACAAUACAGUGAUUGAGGAGCACCUGGGGAAGUUUGGCGUCAUUUGCUUGGAAGACCUCAUUCAUGAAAUUGCCUUCCCAGGGAAGCAUUUCCAGGAGAUCUCAUGGUUCUUGUGCCCUUUCCACCUCUCAGUGGCCCGUCAUGCUACCAAAAAUAGAGUGGGCUUCCUCAAGGAGAUGGGCACACCUGGCUAUCGGGGUGAACGCAUCAAUCAGCUCA2000000009UCCGUCAGCUGAACUAG2000000006ACCCAGGUGCCAAACUGCGGUAAAUUUUUUAUCAGUGAAGUGGAAGCAUGUGUUUUGUUUUGGAAAUUUUUAUCAAGUAUCUUCAGAGAAGAUUAUUUCCUGCU2000000009UUAUCUUCAGAA2000000006ACUGGAAAGGGUCAAAGAAAAG2000000006ACAGUAGCUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 541 720 939 956 1060 1072 1094
Modification Positions m6A m6A Y m6A Y m6A m6A
Genomic Coordinates 6:42884655:+ 6:42886057:+ 6:42886448:+ 6:42886465:+ 6:42887258:+ 6:42887270:+ 6:42887292:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 8cMbzB4aD5Se
WiQcrNTGZHPT
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
UN3tNpbCPHYf
WiQcrNTGZHPT
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
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5aTkEfEpX8Xm
6UuHp6YApVKv
aivdrAsbdKEU
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
WiQcrNTGZHPT
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
8cMbzB4aD5Se
93arJtwJmuS9
ArijeGVTwYBw
KTLz8piFYdwC
Lny8GcCeVGc9
BtsJQJ3DteUq
dknfVe6BK8aP
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8