Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000478214
Gene ID: ENSG00000137309
Gene Name: HMGA1
Sequence (UNICHARACTER ENCODING) AUCCGCAUUUGCUACCAGCGGCGGCCGCGGCGGAGCCAGGCCGGUCCUCAGCGCCCAGCACCGCCGCUCCCGGCAACCCGGAGCGCGCACCGCAGGCCGGCGGCCGAGCUCGCGCAUCCCAGCCAUCACUCUUCCACCUGCUCCUUAGAGAAGGGAAGAUGAGUGAGUCGAGCUCGAAGUCCAGCCAGCCCUUGGCCUCCAAGCAGGAAAAGGACGGCACUGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCUCCGAAGGAGCCCAGCGAAGUGCCAACЖCCUAAGAGACCUCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGUGCUGCCAAGACCCGGAAAACCACCACAACUCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACUGGAGAAGGAGGAAGAGGAGGGCAUCUCGCAGGAGUCCUCGGAGGAGGAGCAGUGACCCAUGCGUGCCGCCUGCUCCUCACUGGAGGAGCAGCUUCCUUCUGGGACUGGACAGCUUUGCUCCGCUCCCACCGCCCCCACCCCUUCCCCAGGCCCACCAUCACCACCGCCUCUGGCCGCCACCCCCAUCUUCCACCUGUGCCCUCACCACCACACUACЖCAGCACACCAGCCGCUGCAGGGCUCCCAUGGGCUGAGUGGGGAGCAGUUUUCCCCUGGCCUCAGUUCCCAGCUCCCCCCGCCCACCCACGCAUACЖCACAUGCCC
Sequence (SHORT NAMES ENCODING) AUCCGCAUUUGCUACCAGCGGCGGCCGCGGCGGAGCCAGGCCGGUCCUCAGCGCCCAGCACCGCCGCUCCCGGCAACCCGGAGCGCGCACCGCAGGCCGGCGGCCGAGCUCGCGCAUCCCAGCCAUCACUCUUCCACCUGCUCCUUAGAGAAGGGAAGAUGAGUGAGUCGAGCUCGAAGUCCAGCCAGCCCUUGGCCUCCAAGCAGGAAAAGGACGGCACUGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCUCCGAAGGAGCCCAGCGAAGUGCCAACm6ACCUAAGAGACCUCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGUGCUGCCAAGACCCGGAAAACCACCACAACUCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACUGGAGAAGGAGGAAGAGGAGGGCAUCUCGCAGGAGUCCUCGGAGGAGGAGCAGUGACCCAUGCGUGCCGCCUGCUCCUCACUGGAGGAGCAGCUUCCUUCUGGGACUGGACAGCUUUGCUCCGCUCCCACCGCCCCCACCCCUUCCCCAGGCCCACCAUCACCACCGCCUCUGGCCGCCACCCCCAUCUUCCACCUGUGCCCUCACCACCACACUACm6ACAGCACACCAGCCGCUGCAGGGCUCCCAUGGGCUGAGUGGGGAGCAGUUUUCCCCUGGCCUCAGUUCCCAGCUCCCCCCGCCCACCCACGCAUACm6ACACAUGCCC
Sequence (MODOMICS CODE ENCODING) AUCCGCAUUUGCUACCAGCGGCGGCCGCGGCGGAGCCAGGCCGGUCCUCAGCGCCCAGCACCGCCGCUCCCGGCAACCCGGAGCGCGCACCGCAGGCCGGCGGCCGAGCUCGCGCAUCCCAGCCAUCACUCUUCCACCUGCUCCUUAGAGAAGGGAAGAUGAGUGAGUCGAGCUCGAAGUCCAGCCAGCCCUUGGCCUCCAAGCAGGAAAAGGACGGCACUGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCUCCGAAGGAGCCCAGCGAAGUGCCAAC2000000006ACCUAAGAGACCUCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGUGCUGCCAAGACCCGGAAAACCACCACAACUCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACUGGAGAAGGAGGAAGAGGAGGGCAUCUCGCAGGAGUCCUCGGAGGAGGAGCAGUGACCCAUGCGUGCCGCCUGCUCCUCACUGGAGGAGCAGCUUCCUUCUGGGACUGGACAGCUUUGCUCCGCUCCCACCGCCCCCACCCCUUCCCCAGGCCCACCAUCACCACCGCCUCUGGCCGCCACCCCCAUCUUCCACCUGUGCCCUCACCACCACACUAC2000000006ACAGCACACCAGCCGCUGCAGGGCUCCCAUGGGCUGAGUGGGGAGCAGUUUUCCCCUGGCCUCAGUUCCCAGCUCCCCCCGCCCACCCACGCAUAC2000000006ACACAUGCCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 284 611 707
Modification Positions m6A m6A m6A
Genomic Coordinates 6:34242735:+ 6:34245046:+ 6:34245142:+
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
NKGM8wdLLrnu
ZuM5xpZmNuDL
3kRDPWwiRCgi
L6w2k2VEv4EY
3kRDPWwiRCgi
L6w2k2VEv4EY