Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000533274
Gene ID: ENSG00000112339
Gene Name: HBS1L
Sequence (UNICHARACTER ENCODING) CAGUCUGUAGAGGAUGAUUAUUGUAUUUCGCCGUCAACAGGAAAACCAGUAGAUUCCCAGACAUCGCGAAGUGAAUCUGAAAUUGUGCCAAAAGUUGCUAAAAUGACUGUAUCUGGAAAGAAGCAAACUAUGGGAUPUGAAGUGCCUGGAGUAUCUUCUGAAGAAAAUGGUCAUAGUUUCCACACACCUCAAAAAGGACCGCCCAUUGAAGAUGCCAUUGCUUCUUCCGAUGUUCUUGAGЖCUGCUUCUAAAUCUGCUAAUCCACCCCACACGAUUCAAGCAUCAGAAGAGCAGAGUUCAACCCCAGCACCGGUGAAAAAGUCUGGCAAGCUGAGGCAGCAAAUAGAUGUGAAGGCGGAACUGGAGAAGCGGCAAGGAGGGAAGCAGCUACUCAACUUAGUGGUCAUUGGUCAUGUUGAUGCUGGGAAAAGUACUCUGAUGGGCCAUAUGCUPUAUCUUCUGGGUAAUAUAAЖCAAAAGAACUAUGCAUAAGUAUGAACAGGAGUCUAAAAAGGCUGGCAAAGCUUCGUUUGCAUAUGCAUGGGUCUUGGAUGAAACUGGCGAAGAAAGGGAAAGGGGAGUAACCAUGGAUGUUGGUAUGACAAAGUUUGAAACCACAACCAAAGUUAUUACAUUAAUGGAUGCUCCAGGCCAPAAGGACUUCAUUCCAAAUAUGAUUACAGGAGCAGCCCAGGCGGAUGUAGCUGUUUUAGUUGUAGAUGCCAGCAGGGGAGAGUUUGAAGCUGGAUPUGAGACUGGAGGACAAACACGAGAGCAUGGACUCUUGGUCCGUUCUCUGGGAGUGACGCAGCUUGCAGUUGCAGUUAAUAAAAUGGAUCAGGUUAAUUGGCAACAAGAAAGGUUUCAAGAGAUUACUGGAAAACUUGGGCACUUUCUUAAGCAAGCAGGUUUUAAGGAGAGUGAUGUAGGUUUPAUUCCUACAAGUGGUCUCAGUGGUGAAAAUCUAAUCACAAGAUCUCAGUCAAGUGAACUCACAAAAUGGUAUAAAGGACUAUGUUUAUUAGAACAAAUUGAUUCCUPUAAGCCUCCCCAGCGAUCUAUUGACAAACCUUUUAGAUUAUGUGUGUCCGAUGUUUUCAAAGAUCAAGGAUCUGGAUUUUGCAUAACUGGUAAAAUAGAAGCUGGUUAUAUCCAAACUGGUGЖCCGACUACUGGCAAUGCCUCCUAAUGAAACUUGUACCGUGAAAGGAAUCACUCUGCAUGAUGAACCUGUCGACUGGGCGGCAGCAGGCGAUCAUGUUAGUCUUACUUUGGUUGGGAUGGAUAUCAUCAAAAUCAAUGUUGGCUGCAUAUUUUGUGGCCCCAAAGUACCCAUUAAAGCUUGCACUCGUUUCAGAGCCCGAAUCCUCAUCUPUAAUAUUGAAAUUCCUAUCACUAAAGGAUUUCCUGUGCUGUUACACUACCAAACUGUCAGUGAACCCGCCGUUAUUAAACGAUUGAUUAGUGUCUUAAЖCAAAAGCACGGGUGAAGUCACAAAGAAAAAGCCUAAGUUUUUGACUAAAGGCCAGAAUGCAUUGGUAGAGCUACAGACACAAAGACCAAUAGCUCUUGAGCUAUAUAAAGACUPUAAAGAGCUGGGGAGGUUCAUGCUACGUUACGGUGGUUCUACЖAUAGCUGCUGGUGUUGUCACUGAGAUAAAAGAAUGAUGGGUCAGAAUUUCUACCACGUUUCUGGAUACAGUGAAAUAGCUAACCUCUGUUUCAAGAAUGCAGUUAUUAAGUCAAAGGAACAAUGUGCAAUUGAUAUGUUUUUAGAUGAGAGAGAAAAAUUAAAGCUAAAAUUAGCUGCAAAGAAGUAUUAAUAAUCACCUCUGCAAAAAUUCUAAGUUGCCAACUGGCAAAGAAAGUCUAAUGUUAAAAACAACUUUGCCUUUGAAACGUUAAUAAAUGGAUUUACUUUGCUAAGAUUUAUGGCAAGUGUCAAAAAUAGUAUCUGAAGAUACUGAAUCAUCAUGAAAUGAACUCUACUUCUGGCCAAAGCACAAUGUAUUUGCAGUUUUCUCUUUUGAUUCAAUUAUACUGCACAUGUUUUAAGGAAAAGUAЖCUUAAUUGGGUUUUUCAGGCAGUUGAUAUUUGACCUAAGC
Sequence (SHORT NAMES ENCODING) CAGUCUGUAGAGGAUGAUUAUUGUAUUUCGCCGUCAACAGGAAAACCAGUAGAUUCCCAGACAUCGCGAAGUGAAUCUGAAAUUGUGCCAAAAGUUGCUAAAAUGACUGUAUCUGGAAAGAAGCAAACUAUGGGAUYUGAAGUGCCUGGAGUAUCUUCUGAAGAAAAUGGUCAUAGUUUCCACACACCUCAAAAAGGACCGCCCAUUGAAGAUGCCAUUGCUUCUUCCGAUGUUCUUGAGm6ACUGCUUCUAAAUCUGCUAAUCCACCCCACACGAUUCAAGCAUCAGAAGAGCAGAGUUCAACCCCAGCACCGGUGAAAAAGUCUGGCAAGCUGAGGCAGCAAAUAGAUGUGAAGGCGGAACUGGAGAAGCGGCAAGGAGGGAAGCAGCUACUCAACUUAGUGGUCAUUGGUCAUGUUGAUGCUGGGAAAAGUACUCUGAUGGGCCAUAUGCUYUAUCUUCUGGGUAAUAUAAm6ACAAAAGAACUAUGCAUAAGUAUGAACAGGAGUCUAAAAAGGCUGGCAAAGCUUCGUUUGCAUAUGCAUGGGUCUUGGAUGAAACUGGCGAAGAAAGGGAAAGGGGAGUAACCAUGGAUGUUGGUAUGACAAAGUUUGAAACCACAACCAAAGUUAUUACAUUAAUGGAUGCUCCAGGCCAYAAGGACUUCAUUCCAAAUAUGAUUACAGGAGCAGCCCAGGCGGAUGUAGCUGUUUUAGUUGUAGAUGCCAGCAGGGGAGAGUUUGAAGCUGGAUYUGAGACUGGAGGACAAACACGAGAGCAUGGACUCUUGGUCCGUUCUCUGGGAGUGACGCAGCUUGCAGUUGCAGUUAAUAAAAUGGAUCAGGUUAAUUGGCAACAAGAAAGGUUUCAAGAGAUUACUGGAAAACUUGGGCACUUUCUUAAGCAAGCAGGUUUUAAGGAGAGUGAUGUAGGUUUYAUUCCUACAAGUGGUCUCAGUGGUGAAAAUCUAAUCACAAGAUCUCAGUCAAGUGAACUCACAAAAUGGUAUAAAGGACUAUGUUUAUUAGAACAAAUUGAUUCCUYUAAGCCUCCCCAGCGAUCUAUUGACAAACCUUUUAGAUUAUGUGUGUCCGAUGUUUUCAAAGAUCAAGGAUCUGGAUUUUGCAUAACUGGUAAAAUAGAAGCUGGUUAUAUCCAAACUGGUGm6ACCGACUACUGGCAAUGCCUCCUAAUGAAACUUGUACCGUGAAAGGAAUCACUCUGCAUGAUGAACCUGUCGACUGGGCGGCAGCAGGCGAUCAUGUUAGUCUUACUUUGGUUGGGAUGGAUAUCAUCAAAAUCAAUGUUGGCUGCAUAUUUUGUGGCCCCAAAGUACCCAUUAAAGCUUGCACUCGUUUCAGAGCCCGAAUCCUCAUCUYUAAUAUUGAAAUUCCUAUCACUAAAGGAUUUCCUGUGCUGUUACACUACCAAACUGUCAGUGAACCCGCCGUUAUUAAACGAUUGAUUAGUGUCUUAAm6ACAAAAGCACGGGUGAAGUCACAAAGAAAAAGCCUAAGUUUUUGACUAAAGGCCAGAAUGCAUUGGUAGAGCUACAGACACAAAGACCAAUAGCUCUUGAGCUAUAUAAAGACUYUAAAGAGCUGGGGAGGUUCAUGCUACGUUACGGUGGUUCUACm6AAUAGCUGCUGGUGUUGUCACUGAGAUAAAAGAAUGAUGGGUCAGAAUUUCUACCACGUUUCUGGAUACAGUGAAAUAGCUAACCUCUGUUUCAAGAAUGCAGUUAUUAAGUCAAAGGAACAAUGUGCAAUUGAUAUGUUUUUAGAUGAGAGAGAAAAAUUAAAGCUAAAAUUAGCUGCAAAGAAGUAUUAAUAAUCACCUCUGCAAAAAUUCUAAGUUGCCAACUGGCAAAGAAAGUCUAAUGUUAAAAACAACUUUGCCUUUGAAACGUUAAUAAAUGGAUUUACUUUGCUAAGAUUUAUGGCAAGUGUCAAAAAUAGUAUCUGAAGAUACUGAAUCAUCAUGAAAUGAACUCUACUUCUGGCCAAAGCACAAUGUAUUUGCAGUUUUCUCUUUUGAUUCAAUUAUACUGCACAUGUUUUAAGGAAAAGUAm6ACUUAAUUGGGUUUUUCAGGCAGUUGAUAUUUGACCUAAGC
Sequence (MODOMICS CODE ENCODING) CAGUCUGUAGAGGAUGAUUAUUGUAUUUCGCCGUCAACAGGAAAACCAGUAGAUUCCCAGACAUCGCGAAGUGAAUCUGAAAUUGUGCCAAAAGUUGCUAAAAUGACUGUAUCUGGAAAGAAGCAAACUAUGGGAU2000000009UUGAAGUGCCUGGAGUAUCUUCUGAAGAAAAUGGUCAUAGUUUCCACACACCUCAAAAAGGACCGCCCAUUGAAGAUGCCAUUGCUUCUUCCGAUGUUCUUGAG2000000006ACUGCUUCUAAAUCUGCUAAUCCACCCCACACGAUUCAAGCAUCAGAAGAGCAGAGUUCAACCCCAGCACCGGUGAAAAAGUCUGGCAAGCUGAGGCAGCAAAUAGAUGUGAAGGCGGAACUGGAGAAGCGGCAAGGAGGGAAGCAGCUACUCAACUUAGUGGUCAUUGGUCAUGUUGAUGCUGGGAAAAGUACUCUGAUGGGCCAUAUGCU2000000009UUAUCUUCUGGGUAAUAUAA2000000006ACAAAAGAACUAUGCAUAAGUAUGAACAGGAGUCUAAAAAGGCUGGCAAAGCUUCGUUUGCAUAUGCAUGGGUCUUGGAUGAAACUGGCGAAGAAAGGGAAAGGGGAGUAACCAUGGAUGUUGGUAUGACAAAGUUUGAAACCACAACCAAAGUUAUUACAUUAAUGGAUGCUCCAGGCCA2000000009UAAGGACUUCAUUCCAAAUAUGAUUACAGGAGCAGCCCAGGCGGAUGUAGCUGUUUUAGUUGUAGAUGCCAGCAGGGGAGAGUUUGAAGCUGGAU2000000009UUGAGACUGGAGGACAAACACGAGAGCAUGGACUCUUGGUCCGUUCUCUGGGAGUGACGCAGCUUGCAGUUGCAGUUAAUAAAAUGGAUCAGGUUAAUUGGCAACAAGAAAGGUUUCAAGAGAUUACUGGAAAACUUGGGCACUUUCUUAAGCAAGCAGGUUUUAAGGAGAGUGAUGUAGGUUU2000000009UAUUCCUACAAGUGGUCUCAGUGGUGAAAAUCUAAUCACAAGAUCUCAGUCAAGUGAACUCACAAAAUGGUAUAAAGGACUAUGUUUAUUAGAACAAAUUGAUUCCU2000000009UUAAGCCUCCCCAGCGAUCUAUUGACAAACCUUUUAGAUUAUGUGUGUCCGAUGUUUUCAAAGAUCAAGGAUCUGGAUUUUGCAUAACUGGUAAAAUAGAAGCUGGUUAUAUCCAAACUGGUG2000000006ACCGACUACUGGCAAUGCCUCCUAAUGAAACUUGUACCGUGAAAGGAAUCACUCUGCAUGAUGAACCUGUCGACUGGGCGGCAGCAGGCGAUCAUGUUAGUCUUACUUUGGUUGGGAUGGAUAUCAUCAAAAUCAAUGUUGGCUGCAUAUUUUGUGGCCCCAAAGUACCCAUUAAAGCUUGCACUCGUUUCAGAGCCCGAAUCCUCAUCU2000000009UUAAUAUUGAAAUUCCUAUCACUAAAGGAUUUCCUGUGCUGUUACACUACCAAACUGUCAGUGAACCCGCCGUUAUUAAACGAUUGAUUAGUGUCUUAA2000000006ACAAAAGCACGGGUGAAGUCACAAAGAAAAAGCCUAAGUUUUUGACUAAAGGCCAGAAUGCAUUGGUAGAGCUACAGACACAAAGACCAAUAGCUCUUGAGCUAUAUAAAGACU2000000009UUAAAGAGCUGGGGAGGUUCAUGCUACGUUACGGUGGUUCUAC2000000006AAUAGCUGCUGGUGUUGUCACUGAGAUAAAAGAAUGAUGGGUCAGAAUUUCUACCACGUUUCUGGAUACAGUGAAAUAGCUAACCUCUGUUUCAAGAAUGCAGUUAUUAAGUCAAAGGAACAAUGUGCAAUUGAUAUGUUUUUAGAUGAGAGAGAAAAAUUAAAGCUAAAAUUAGCUGCAAAGAAGUAUUAAUAAUCACCUCUGCAAAAAUUCUAAGUUGCCAACUGGCAAAGAAAGUCUAAUGUUAAAAACAACUUUGCCUUUGAAACGUUAAUAAAUGGAUUUACUUUGCUAAGAUUUAUGGCAAGUGUCAAAAAUAGUAUCUGAAGAUACUGAAUCAUCAUGAAAUGAACUCUACUUCUGGCCAAAGCACAAUGUAUUUGCAGUUUUCUCUUUUGAUUCAAUUAUACUGCACAUGUUUUAAGGAAAAGUA2000000006ACUUAAUUGGGUUUUUCAGGCAGUUGAUAUUUGACCUAAGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 137 241 453 473 654 749 933 1040 1163 1373 1472 1586 1629 2062
Modification Positions Y m6A Y m6A Y Y Y Y m6A Y m6A Y m6A m6A
Genomic Coordinates 6:135002746:- 6:134997565:- 6:134996899:- 6:134996879:- 6:134993797:- 6:134987736:- 6:134986166:- 6:134985403:- 6:134982502:- 6:134978713:- 6:134969274:- 6:134966396:- 6:134966353:- 6:134964882:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
msuJfBpJvM5H
Q36pf44ZRvxu
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
ArijeGVTwYBw
KTLz8piFYdwC
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
fhx8RaDLaBC3
eNmyzvoSFF4c
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8