General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000347617
Gene ID:	ENSG00000137309
Gene Name:	HMGA1
Sequence (UNICHARACTER ENCODING)	CUUUUUAAGCUCCCCUGAGCCGGUGCUGCGCUCCUCUAAUUGGGACUCCGAGCCGGGGCUAUUUCUGGCGCUGGCGCGGCUCCAAGAAGGCCAUCCCAGCCAUCACUCUUCCACCUGCUCCUUAGAGAAGGGAAGAUGAGUGAGUCGAGCUCGAAGUCCAGCCAGCCCUUGGCCUCCAAGCAGGAAAAGGACGGCACUGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCUCCGAAGGAGCCCAGCGAAGUGCCAACЖCCUAAGAGACCUCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGUGCUGCCAAGACCCGGAAAACCACCACAACUCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACUGGAGAAGGAGGAAGAGGAGGGCAUCUCGCAGGAGUCCUCGGAGGAGGAGCAGUGACCCAUGCGUGCCGCCUGCUCCUCACUGGAGGAGCAGCUUCCUUCUGGGACUGGACAGCUUUGCUCCGCUCCCACCGCCCCCACCCCUUCCCCAGGCCCACCAUCACCACCGCCUCUGGCCGCCACCCCCAUCUUCCACCUGUGCCCUCACCACCACACUACЖCAGCACACCAGCCGCUGCAGGGCUCCCAUGGGCUGAGUGGGGAGCAGUUUUCCCCUGGCCUCAGUUCCCAGCUCCCCCCGCCCACCCACGCAUACЖCACAUGCCCUCCUGGACAAGGCUAЖCAPCCCACUUAGCCGCACCCUGCACCUGCUGCGUCCCCACUCCCUUGGUGGUGGGGACAUUGCUCUCUGGGCUUUUGGUUUGGGGGCGCCCUCUCUGCUCCUUCACUGUUCCCUCUGGCUUCCCAUAGUGGGGCCUGGGAGGGUUCCCCUGGCCUUAAAAGGGGCCCAAGCCCCAUCUCAPCCUGGCACGCCCUACUCCACUGCCCUGGCAGCAGCAGGUGUGGCCAAUGGAGGGGGGUGCUGGCCCCCAGGAUUCCCCCAGCCAAACUGUCUUUGUCACCACGUGGGGCUCACUUUUCAPCCUUCCCCAACUUCCCUAGUCCCCGUACUAGGUUGGACAGCCCCCUUCGGUUACAGGAAGGCAGGAGGGGUGAGUCCCCUACUCCCUCUUCACUGUGGCCACAGCCCCCUUGCCCUCCGCCUGGGAUCUGAGUACAUAUUGUGGUGAUGGAGAUGCAGUCACUUAUUGUCCAGGUGAGGCCCAAGAGCCCUGUGGCCGCCACCUGAGGUGGGCUGGGGCUGCUCCCCUAACCCUACUUUGCUUCCGCCACUCAGCCAUUUCCCCCUCCUCAGAUGGGGCACCAAUAACAAGGAGCUCACCCUGCCCGCUCCCAACCCCCCUCCUGCUCCUCCCUGCCCCCCAAGGUUCUGGUUCCAUUUUUCCUCUGUUCACAAACUACCUCUGGЖCAGUUGUGUUGUUUUUUGUUCAAUGUUCCAUUCUUCGACAPCCGUCAUUGCUGCUGCUACCAGCGCCAAAUGUUCAPCCUCAUUGCCUCCUGUUCUGCCCACGAUCCCCUCCCCCAAGAUACUCUUUGUGGGGAAGAGGGGCUGGGGCAUGGCAGGCUGGGUGACCGACUACCCCAGUCCCAGGGAAGGUGGGGCCCUGCCCCUAGGAUGCUGCAGCAGAGUGAGCAAGGGGGCCCAAAUCGACCAPAAAGGGUGUAGGGGCCACCPCCUCCCCCUGUUCUGUUGGGGAGGG#UAGCCAUGAUPUGUCCCAGCCUGGGGCUCCCUCUCUGGUUUCCUAUUUGCAGUUACUUGAAUAAAAAAAAUAUCCUUUUCUGGA
Sequence (SHORT NAMES ENCODING)	CUUUUUAAGCUCCCCUGAGCCGGUGCUGCGCUCCUCUAAUUGGGACUCCGAGCCGGGGCUAUUUCUGGCGCUGGCGCGGCUCCAAGAAGGCCAUCCCAGCCAUCACUCUUCCACCUGCUCCUUAGAGAAGGGAAGAUGAGUGAGUCGAGCUCGAAGUCCAGCCAGCCCUUGGCCUCCAAGCAGGAAAAGGACGGCACUGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCUCCGAAGGAGCCCAGCGAAGUGCCAACm6ACCUAAGAGACCUCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGUGCUGCCAAGACCCGGAAAACCACCACAACUCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACUGGAGAAGGAGGAAGAGGAGGGCAUCUCGCAGGAGUCCUCGGAGGAGGAGCAGUGACCCAUGCGUGCCGCCUGCUCCUCACUGGAGGAGCAGCUUCCUUCUGGGACUGGACAGCUUUGCUCCGCUCCCACCGCCCCCACCCCUUCCCCAGGCCCACCAUCACCACCGCCUCUGGCCGCCACCCCCAUCUUCCACCUGUGCCCUCACCACCACACUACm6ACAGCACACCAGCCGCUGCAGGGCUCCCAUGGGCUGAGUGGGGAGCAGUUUUCCCCUGGCCUCAGUUCCCAGCUCCCCCCGCCCACCCACGCAUACm6ACACAUGCCCUCCUGGACAAGGCUAm6ACAYCCCACUUAGCCGCACCCUGCACCUGCUGCGUCCCCACUCCCUUGGUGGUGGGGACAUUGCUCUCUGGGCUUUUGGUUUGGGGGCGCCCUCUCUGCUCCUUCACUGUUCCCUCUGGCUUCCCAUAGUGGGGCCUGGGAGGGUUCCCCUGGCCUUAAAAGGGGCCCAAGCCCCAUCUCAYCCUGGCACGCCCUACUCCACUGCCCUGGCAGCAGCAGGUGUGGCCAAUGGAGGGGGGUGCUGGCCCCCAGGAUUCCCCCAGCCAAACUGUCUUUGUCACCACGUGGGGCUCACUUUUCAYCCUUCCCCAACUUCCCUAGUCCCCGUACUAGGUUGGACAGCCCCCUUCGGUUACAGGAAGGCAGGAGGGGUGAGUCCCCUACUCCCUCUUCACUGUGGCCACAGCCCCCUUGCCCUCCGCCUGGGAUCUGAGUACAUAUUGUGGUGAUGGAGAUGCAGUCACUUAUUGUCCAGGUGAGGCCCAAGAGCCCUGUGGCCGCCACCUGAGGUGGGCUGGGGCUGCUCCCCUAACCCUACUUUGCUUCCGCCACUCAGCCAUUUCCCCCUCCUCAGAUGGGGCACCAAUAACAAGGAGCUCACCCUGCCCGCUCCCAACCCCCCUCCUGCUCCUCCCUGCCCCCCAAGGUUCUGGUUCCAUUUUUCCUCUGUUCACAAACUACCUCUGGm6ACAGUUGUGUUGUUUUUUGUUCAAUGUUCCAUUCUUCGACAYCCGUCAUUGCUGCUGCUACCAGCGCCAAAUGUUCAYCCUCAUUGCCUCCUGUUCUGCCCACGAUCCCCUCCCCCAAGAUACUCUUUGUGGGGAAGAGGGGCUGGGGCAUGGCAGGCUGGGUGACCGACUACCCCAGUCCCAGGGAAGGUGGGGCCCUGCCCCUAGGAUGCUGCAGCAGAGUGAGCAAGGGGGCCCAAAUCGACCAYAAAGGGUGUAGGGGCCACCYCCUCCCCCUGUUCUGUUGGGGAGGGGmUAGCCAUGAUYUGUCCCAGCCUGGGGCUCCCUCUCUGGUUUCCUAUUUGCAGUUACUUGAAUAAAAAAAAUAUCCUUUUCUGGA
Sequence (MODOMICS CODE ENCODING)	CUUUUUAAGCUCCCCUGAGCCGGUGCUGCGCUCCUCUAAUUGGGACUCCGAGCCGGGGCUAUUUCUGGCGCUGGCGCGGCUCCAAGAAGGCCAUCCCAGCCAUCACUCUUCCACCUGCUCCUUAGAGAAGGGAAGAUGAGUGAGUCGAGCUCGAAGUCCAGCCAGCCCUUGGCCUCCAAGCAGGAAAAGGACGGCACUGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCUCCGAAGGAGCCCAGCGAAGUGCCAAC2000000006ACCUAAGAGACCUCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGUGCUGCCAAGACCCGGAAAACCACCACAACUCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACUGGAGAAGGAGGAAGAGGAGGGCAUCUCGCAGGAGUCCUCGGAGGAGGAGCAGUGACCCAUGCGUGCCGCCUGCUCCUCACUGGAGGAGCAGCUUCCUUCUGGGACUGGACAGCUUUGCUCCGCUCCCACCGCCCCCACCCCUUCCCCAGGCCCACCAUCACCACCGCCUCUGGCCGCCACCCCCAUCUUCCACCUGUGCCCUCACCACCACACUAC2000000006ACAGCACACCAGCCGCUGCAGGGCUCCCAUGGGCUGAGUGGGGAGCAGUUUUCCCCUGGCCUCAGUUCCCAGCUCCCCCCGCCCACCCACGCAUAC2000000006ACACAUGCCCUCCUGGACAAGGCUA2000000006ACA2000000009UCCCACUUAGCCGCACCCUGCACCUGCUGCGUCCCCACUCCCUUGGUGGUGGGGACAUUGCUCUCUGGGCUUUUGGUUUGGGGGCGCCCUCUCUGCUCCUUCACUGUUCCCUCUGGCUUCCCAUAGUGGGGCCUGGGAGGGUUCCCCUGGCCUUAAAAGGGGCCCAAGCCCCAUCUCA2000000009UCCUGGCACGCCCUACUCCACUGCCCUGGCAGCAGCAGGUGUGGCCAAUGGAGGGGGGUGCUGGCCCCCAGGAUUCCCCCAGCCAAACUGUCUUUGUCACCACGUGGGGCUCACUUUUCA2000000009UCCUUCCCCAACUUCCCUAGUCCCCGUACUAGGUUGGACAGCCCCCUUCGGUUACAGGAAGGCAGGAGGGGUGAGUCCCCUACUCCCUCUUCACUGUGGCCACAGCCCCCUUGCCCUCCGCCUGGGAUCUGAGUACAUAUUGUGGUGAUGGAGAUGCAGUCACUUAUUGUCCAGGUGAGGCCCAAGAGCCCUGUGGCCGCCACCUGAGGUGGGCUGGGGCUGCUCCCCUAACCCUACUUUGCUUCCGCCACUCAGCCAUUUCCCCCUCCUCAGAUGGGGCACCAAUAACAAGGAGCUCACCCUGCCCGCUCCCAACCCCCCUCCUGCUCCUCCCUGCCCCCCAAGGUUCUGGUUCCAUUUUUCCUCUGUUCACAAACUACCUCUGG2000000006ACAGUUGUGUUGUUUUUUGUUCAAUGUUCCAUUCUUCGACA2000000009UCCGUCAUUGCUGCUGCUACCAGCGCCAAAUGUUCA2000000009UCCUCAUUGCCUCCUGUUCUGCCCACGAUCCCCUCCCCCAAGAUACUCUUUGUGGGGAAGAGGGGCUGGGGCAUGGCAGGCUGGGUGACCGACUACCCCAGUCCCAGGGAAGGUGGGGCCCUGCCCCUAGGAUGCUGCAGCAGAGUGAGCAAGGGGGCCCAAAUCGACCA2000000009UAAAGGGUGUAGGGGCCACC2000000009UCCUCCCCCUGUUCUGUUGGGGAGGG2000000090GUAGCCAUGAU2000000009UUGUCCCAGCCUGGGGCUCCCUCUCUGGUUUCCUAUUUGCAGUUACUUGAAUAAAAAAAAUAUCCUUUUCUGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	261	588	684	709	712	890	1010	1396	1437	1473	1643	1663	1689	1700
Modification Positions	m6A	m6A	m6A	m6A	Y	Y	Y	m6A	Y	Y	Y	Y	Gm	Y
Genomic Coordinates	6:34242735:+	6:34245046:+	6:34245142:+	6:34245167:+	6:34245170:+	6:34245348:+	6:34245468:+	6:34245854:+	6:34245895:+	6:34245931:+	6:34246101:+	6:34246121:+	6:34246147:+	6:34246158:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	3kRDPWwiRCgi L6w2k2VEv4EY	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa XUkp6ghERQML 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	aEoRHyGnepSt BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	5EVooy9BzECE c3ahQNCFGdsx LLvJQkDcDhob BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8