General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000639568
Gene ID:	ENSG00000112245
Gene Name:	PTP4A1
Sequence (UNICHARACTER ENCODING)	GACUUGAGUUGCCUUGUCUGGUAUCCUUAUGCAGAAUGAACUGAAAUAAUCAUCAAUCUGAAAAGCUACUCUUAAACAGAGACUUGCUUCAACACCAGGAAGAACAUGAAAGGGUGACUCAUAAUUCCCAGCAGCAGUGCCAGUUCAUGUGCUGGGAUUCUGACCACAAGCCUAACAAUCAGGUCAGGGAGUCAGAUUUCUGUUGGAUUUAGAAAAGCAUCUAUGUGUUUAUGAAAGAAACCCACUGGAUUUUUAAUAGUUCUGCAGCUCUUGGAGGCUCUACAUCUACCCUUUCUCCCCAGCCAAGAGCAUGGCUAUGGGAGAAGGAAGGCAGGCAGCAGGCAGGGCAGUGUGCCCGCCCUCUCUUUCUGGAGUAUAAAAGGAGUUGUGAGAGGCUUGGGUCACCAUUUGGUGAGCUGAGGGUGAAGCUACAAAGGUUGAAGCGUUCUUCAGACGACUCUACCUGAGGGUGAAGCUACAAAAAUUGAAGCGUUCUUCAGACGACUCUACCUGAAGAAAGAACCCUGCUACAGAGAGGGCAAUUCUGUGGUGUUCUUGGUCACACAUUUAUGGAGUUUCUGAAGGGCAGUGGAGAUUACUGCCAGGCACAGCACGACCUCUAUGCAGЖCAAGUGAЖCUGUAGAAЖCUGAUUACUGCUCCACCAAGAAGCCCCCAPAAGAGUGGUUAUCCUGGЖCACAGAAGUGUUGAAUUGAAAUCCACAGAGCAUUUUACЖAGAGUUCUGACCUGGAUGGGGUAAACCUCAGUGCACUUCUUUUCUGUUGGCCUCAGUAUUACUGGAUUGAAGAAUUGCUGCUUCUUGUUAGGAGGUUCAUUUCACUUAUCAUUACUUACAACUUCAUACUCAAAGCACUGAGAAUUUCAAGUGGAGUAUAUUGAAGUAGЖCUUCAGUUUCUUUGCAUCAUUUCUGUAUUCAAUUUUUUUAAUUAUUUCAUAACCCUAUUGAGUGUUUUUUAЖCUAAAUUAЖCAUGGCUCGAAUGAACCGCCCAGCUCCUGUGGAAGUCACAUACAAGAACAUGAGAUUUCUUAUUACACACAAUCCAACCAAUGCGACCUUAAACAAAUUUAUAGAG
Sequence (SHORT NAMES ENCODING)	GACUUGAGUUGCCUUGUCUGGUAUCCUUAUGCAGAAUGAACUGAAAUAAUCAUCAAUCUGAAAAGCUACUCUUAAACAGAGACUUGCUUCAACACCAGGAAGAACAUGAAAGGGUGACUCAUAAUUCCCAGCAGCAGUGCCAGUUCAUGUGCUGGGAUUCUGACCACAAGCCUAACAAUCAGGUCAGGGAGUCAGAUUUCUGUUGGAUUUAGAAAAGCAUCUAUGUGUUUAUGAAAGAAACCCACUGGAUUUUUAAUAGUUCUGCAGCUCUUGGAGGCUCUACAUCUACCCUUUCUCCCCAGCCAAGAGCAUGGCUAUGGGAGAAGGAAGGCAGGCAGCAGGCAGGGCAGUGUGCCCGCCCUCUCUUUCUGGAGUAUAAAAGGAGUUGUGAGAGGCUUGGGUCACCAUUUGGUGAGCUGAGGGUGAAGCUACAAAGGUUGAAGCGUUCUUCAGACGACUCUACCUGAGGGUGAAGCUACAAAAAUUGAAGCGUUCUUCAGACGACUCUACCUGAAGAAAGAACCCUGCUACAGAGAGGGCAAUUCUGUGGUGUUCUUGGUCACACAUUUAUGGAGUUUCUGAAGGGCAGUGGAGAUUACUGCCAGGCACAGCACGACCUCUAUGCAGm6ACAAGUGAm6ACUGUAGAAm6ACUGAUUACUGCUCCACCAAGAAGCCCCCAYAAGAGUGGUUAUCCUGGm6ACACAGAAGUGUUGAAUUGAAAUCCACAGAGCAUUUUACm6AAGAGUUCUGACCUGGAUGGGGUAAACCUCAGUGCACUUCUUUUCUGUUGGCCUCAGUAUUACUGGAUUGAAGAAUUGCUGCUUCUUGUUAGGAGGUUCAUUUCACUUAUCAUUACUUACAACUUCAUACUCAAAGCACUGAGAAUUUCAAGUGGAGUAUAUUGAAGUAGm6ACUUCAGUUUCUUUGCAUCAUUUCUGUAUUCAAUUUUUUUAAUUAUUUCAUAACCCUAUUGAGUGUUUUUUAm6ACUAAAUUAm6ACAUGGCUCGAAUGAACCGCCCAGCUCCUGUGGAAGUCACAUACAAGAACAUGAGAUUUCUUAUUACACACAAUCCAACCAAUGCGACCUUAAACAAAUUUAUAGAG
Sequence (MODOMICS CODE ENCODING)	GACUUGAGUUGCCUUGUCUGGUAUCCUUAUGCAGAAUGAACUGAAAUAAUCAUCAAUCUGAAAAGCUACUCUUAAACAGAGACUUGCUUCAACACCAGGAAGAACAUGAAAGGGUGACUCAUAAUUCCCAGCAGCAGUGCCAGUUCAUGUGCUGGGAUUCUGACCACAAGCCUAACAAUCAGGUCAGGGAGUCAGAUUUCUGUUGGAUUUAGAAAAGCAUCUAUGUGUUUAUGAAAGAAACCCACUGGAUUUUUAAUAGUUCUGCAGCUCUUGGAGGCUCUACAUCUACCCUUUCUCCCCAGCCAAGAGCAUGGCUAUGGGAGAAGGAAGGCAGGCAGCAGGCAGGGCAGUGUGCCCGCCCUCUCUUUCUGGAGUAUAAAAGGAGUUGUGAGAGGCUUGGGUCACCAUUUGGUGAGCUGAGGGUGAAGCUACAAAGGUUGAAGCGUUCUUCAGACGACUCUACCUGAGGGUGAAGCUACAAAAAUUGAAGCGUUCUUCAGACGACUCUACCUGAAGAAAGAACCCUGCUACAGAGAGGGCAAUUCUGUGGUGUUCUUGGUCACACAUUUAUGGAGUUUCUGAAGGGCAGUGGAGAUUACUGCCAGGCACAGCACGACCUCUAUGCAG2000000006ACAAGUGA2000000006ACUGUAGAA2000000006ACUGAUUACUGCUCCACCAAGAAGCCCCCA2000000009UAAGAGUGGUUAUCCUGG2000000006ACACAGAAGUGUUGAAUUGAAAUCCACAGAGCAUUUUAC2000000006AAGAGUUCUGACCUGGAUGGGGUAAACCUCAGUGCACUUCUUUUCUGUUGGCCUCAGUAUUACUGGAUUGAAGAAUUGCUGCUUCUUGUUAGGAGGUUCAUUUCACUUAUCAUUACUUACAACUUCAUACUCAAAGCACUGAGAAUUUCAAGUGGAGUAUAUUGAAGUAG2000000006ACUUCAGUUUCUUUGCAUCAUUUCUGUAUUCAAUUUUUUUAAUUAUUUCAUAACCCUAUUGAGUGUUUUUUA2000000006ACUAAAUUA2000000006ACAUGGCUCGAAUGAACCGCCCAGCUCCUGUGGAAGUCACAUACAAGAACAUGAGAUUUCUUAUUACACACAAUCCAACCAAUGCGACCUUAAACAAAUUUAUAGAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	628	636	645	675	693	732	902	974	983
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	6:63576524:+	6:63576532:+	6:63576541:+	6:63576571:+	6:63576589:+	6:63576628:+	6:63576798:+	6:63576870:+	6:63576879:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML dA7YoLwHrzgR BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8