General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000463634
Gene ID:	ENSG00000112739
Gene Name:	PRPF4B
Sequence (UNICHARACTER ENCODING)	GCAAAGUAAAGGAAGAUAAAUUUAAAGGAAGUCUUUCUGAAGGAAUGAAAGUUGAGCAGGAAUCUUCGUCUGAUGAUAACCUUGAAGACUUUGAUGUAGAGGAAGAAGAUGAAGAAGCCCUAAUAGAACAGAGAAGAAUCCAAAGGCAGGCAAUUGUUCAGAAAUAUAAAUACCUUGCUGAAGAUAGCAACAUGUCUGUGCCAUCUGAACCAAGCAGCCCCCAGAGCAGUACGAGAACACGAUCACCAUCUCCAGAUGACAUUCUGGAGCGAGUAGCUGCUGAUGUUAAAGAGUAUGAACGGGAAAAUGUUGAUACAUUUGAGGCCUCAGUGAAAGCCAAGCAUAAUCUAAUGACAGUUGAACAGAAUAAUGGUUCAUCUCAGAAGAAGUUGUUGGCACCUGAUAUGUUUACAGAAUCUGAUGAUAUGUUUGCUGCGUAUUUUGAUAGUGCUCGUCUUCGGGCCGCUGGCAUUGGAAAAGAUUUCAAAGAGAAUCCCAACCUCAGAGAUAACUGGACCGAUGCAGAAGGCUAUUAUCGUGUGAACAUAGGUGAAGUCCUAGAUAAACGUUACAAUGUGUAUGGCUACACUGGGCAAGGUGUAUUCAGUAAUGUUGUACGAGCCAGAGAUAAUGCAAGAGCCAACCAAGAAGUGGCUGUAAAGAUCAUCAGAAACAAUGAGCUCAUGCAAAAGACUGGUUUAAAAGAAUUAGAGUUCUUGAAAAAACUUAAUGAUGCUGAUCCUGAUGACAAAUUUCAUUGUCUGAGACUCUUCAGGCACUUCUAUCACAAGCAGCAUCUUUGUCUGGUAUUCGAGCCUCUCAGCAUGAACUUACGAGAGGUGUUAAAAAAAUAUGGUAAAGAUGUUGGUCUUCAUAUUAAAGCUGUAAGAUCCUAUAGUCAGCAGUUGUUCCUGGCAUUGAAACUCCUUAAAAGAUGCAAUAUCCUACAUGCAGAUAUCAAGCCAGACAAUAUCCUGGUUAAUGAAUCCAAAACUAUUUUAAAGCUUUGCGAUUUUGGGUCGGCUUCACAUGUUGCGGAUAAUGACAUAЖCACCUUAUCUUGUCAGUAGAUUUUAUCGUGCUCCUGAAAUCACAGCUGCACGAGUUCAUUCAUGAGGAAGGGAACCAUAGCAAGUUCAUCCUCCUCAGGUGGAAUGAAGGUAGUUGUGACAGGAGUCUUGAUCAUGUCGGGCAAGAGUAGCAAAACAGUUGUGGAAAAUCCUCGACUUUAGAAGACUGCUCUUGAUUAUUCAAGUUAUAGGUAAAAGCUAUGACUAUGGUAUAGAUAUGUGGUCUGUAGGUUGCACCUUAUACGAACUCUAUACUGGAAAAAUUUUAUUCCCUGGCAAAACCAAUAACCAUAUGCUGAAGCUUGCAAUGGAUCUCAAAGGAAAGAUGCCAAAUAAGAUGAUUCGAAAAGGUGUGUUCAAAGAUCAGCAUUUUGAUCAAAAUCUCAACUUCAUGUACAUAGAAGUUGAUAAAGUAЖCAGAGAGGGAGAAAGUUACUGUUAUGAGCACCAUUAAUCCAACUAAGGЖCCUGUUGGCUGЖCUUGAUUGGGUGCCAGAGACUUCCUGAAGACCAACGUAAGAAAGUACACCAGCUAAAGGЖCUUGUUGGACCAGAUUCUGAUGUUGGACCCAGCUAAACGAAUUAGCAUCAACCAGGCCCUACAGCACGCCUUCAPCCAGGAAAAAAUUUAAЖCAAGAUGAAGAAACUCCAAGGGUUUGAGUAAAUACAAAGЖCUGAAGAAAUUUCACAGCAGUUUAUUAAUGUAUAUAAЖCUUAUAAAUAUUUCUCCAGCAAAUUUGAGGAAGCAUGAUAUAUUUGAAUUAЖCACCAAGGGUGAUAUUUCUUUUAGAGAUGUUAGUUAAUCUGUUUUGUGUCUUACGUGAAAUUUCACUGUAGACUGUUUUAAAUUGCCAAGACUGCACAAAAUUACAGUGCUAAUGUAUAUGGUUGCAGUUCACAUAAAGЖCAAAAGCAUCUGUUAUGAAAUGAGUAGUAAUAUUGGGUGGUUGAUUUGUUCUUAGCAGACUUGGCUUCAUUUUGGUCUUGAGAUAAAAUGGCCAGCAUAAAUGCUGUUUAUAUUCACGUUUUCCUAGGUGUGUGUGUGCAGGCCACAGCAGCAUGCCCUUGGUGUAGUCAGUGCCGAAAGGGGUCUGUUCCUUCUUGAGCCUGCCUGCAGGGAUGGUCUCCUUUUAAAGCAGGUUGUGUGCAGCAUUCAGUACACUGAAGGCAUAAACCUUCCACUCUUGAACAAAGCAGCUGCUUUUUAAAAGCGAGAAAAAGGAAAACGGGGCACAGGCCAUUCGACGCCUUCUCCAAGGGGUCUGAUUUGCUGAGACACCAGCUUCACCUUCUUAACAAGGUGCAGCUCAGUGGAAGAUGAUGACAACCAGAAGACAUGAGCUAAGGGUAAGGGЖCUGUUCUGAAGAACCUUUCCAUUUAGUGAUCAAGAUAUGGAAGCUGAUUUCUGAAAAUGCUCAGUGUGUACUCUAAUUAUUUAUGGUACCAUUUGAAUUGUAЖCUUGCAUUUUAGCAGUGCAUGUUUCUAAUUGACUUACUGGGAAACUGAAUAAAAUAUGCCUCUUAUUAUCA
Sequence (SHORT NAMES ENCODING)	GCAAAGUAAAGGAAGAUAAAUUUAAAGGAAGUCUUUCUGAAGGAAUGAAAGUUGAGCAGGAAUCUUCGUCUGAUGAUAACCUUGAAGACUUUGAUGUAGAGGAAGAAGAUGAAGAAGCCCUAAUAGAACAGAGAAGAAUCCAAAGGCAGGCAAUUGUUCAGAAAUAUAAAUACCUUGCUGAAGAUAGCAACAUGUCUGUGCCAUCUGAACCAAGCAGCCCCCAGAGCAGUACGAGAACACGAUCACCAUCUCCAGAUGACAUUCUGGAGCGAGUAGCUGCUGAUGUUAAAGAGUAUGAACGGGAAAAUGUUGAUACAUUUGAGGCCUCAGUGAAAGCCAAGCAUAAUCUAAUGACAGUUGAACAGAAUAAUGGUUCAUCUCAGAAGAAGUUGUUGGCACCUGAUAUGUUUACAGAAUCUGAUGAUAUGUUUGCUGCGUAUUUUGAUAGUGCUCGUCUUCGGGCCGCUGGCAUUGGAAAAGAUUUCAAAGAGAAUCCCAACCUCAGAGAUAACUGGACCGAUGCAGAAGGCUAUUAUCGUGUGAACAUAGGUGAAGUCCUAGAUAAACGUUACAAUGUGUAUGGCUACACUGGGCAAGGUGUAUUCAGUAAUGUUGUACGAGCCAGAGAUAAUGCAAGAGCCAACCAAGAAGUGGCUGUAAAGAUCAUCAGAAACAAUGAGCUCAUGCAAAAGACUGGUUUAAAAGAAUUAGAGUUCUUGAAAAAACUUAAUGAUGCUGAUCCUGAUGACAAAUUUCAUUGUCUGAGACUCUUCAGGCACUUCUAUCACAAGCAGCAUCUUUGUCUGGUAUUCGAGCCUCUCAGCAUGAACUUACGAGAGGUGUUAAAAAAAUAUGGUAAAGAUGUUGGUCUUCAUAUUAAAGCUGUAAGAUCCUAUAGUCAGCAGUUGUUCCUGGCAUUGAAACUCCUUAAAAGAUGCAAUAUCCUACAUGCAGAUAUCAAGCCAGACAAUAUCCUGGUUAAUGAAUCCAAAACUAUUUUAAAGCUUUGCGAUUUUGGGUCGGCUUCACAUGUUGCGGAUAAUGACAUAm6ACACCUUAUCUUGUCAGUAGAUUUUAUCGUGCUCCUGAAAUCACAGCUGCACGAGUUCAUUCAUGAGGAAGGGAACCAUAGCAAGUUCAUCCUCCUCAGGUGGAAUGAAGGUAGUUGUGACAGGAGUCUUGAUCAUGUCGGGCAAGAGUAGCAAAACAGUUGUGGAAAAUCCUCGACUUUAGAAGACUGCUCUUGAUUAUUCAAGUUAUAGGUAAAAGCUAUGACUAUGGUAUAGAUAUGUGGUCUGUAGGUUGCACCUUAUACGAACUCUAUACUGGAAAAAUUUUAUUCCCUGGCAAAACCAAUAACCAUAUGCUGAAGCUUGCAAUGGAUCUCAAAGGAAAGAUGCCAAAUAAGAUGAUUCGAAAAGGUGUGUUCAAAGAUCAGCAUUUUGAUCAAAAUCUCAACUUCAUGUACAUAGAAGUUGAUAAAGUAm6ACAGAGAGGGAGAAAGUUACUGUUAUGAGCACCAUUAAUCCAACUAAGGm6ACCUGUUGGCUGm6ACUUGAUUGGGUGCCAGAGACUUCCUGAAGACCAACGUAAGAAAGUACACCAGCUAAAGGm6ACUUGUUGGACCAGAUUCUGAUGUUGGACCCAGCUAAACGAAUUAGCAUCAACCAGGCCCUACAGCACGCCUUCAYCCAGGAAAAAAUUUAAm6ACAAGAUGAAGAAACUCCAAGGGUUUGAGUAAAUACAAAGm6ACUGAAGAAAUUUCACAGCAGUUUAUUAAUGUAUAUAAm6ACUUAUAAAUAUUUCUCCAGCAAAUUUGAGGAAGCAUGAUAUAUUUGAAUUAm6ACACCAAGGGUGAUAUUUCUUUUAGAGAUGUUAGUUAAUCUGUUUUGUGUCUUACGUGAAAUUUCACUGUAGACUGUUUUAAAUUGCCAAGACUGCACAAAAUUACAGUGCUAAUGUAUAUGGUUGCAGUUCACAUAAAGm6ACAAAAGCAUCUGUUAUGAAAUGAGUAGUAAUAUUGGGUGGUUGAUUUGUUCUUAGCAGACUUGGCUUCAUUUUGGUCUUGAGAUAAAAUGGCCAGCAUAAAUGCUGUUUAUAUUCACGUUUUCCUAGGUGUGUGUGUGCAGGCCACAGCAGCAUGCCCUUGGUGUAGUCAGUGCCGAAAGGGGUCUGUUCCUUCUUGAGCCUGCCUGCAGGGAUGGUCUCCUUUUAAAGCAGGUUGUGUGCAGCAUUCAGUACACUGAAGGCAUAAACCUUCCACUCUUGAACAAAGCAGCUGCUUUUUAAAAGCGAGAAAAAGGAAAACGGGGCACAGGCCAUUCGACGCCUUCUCCAAGGGGUCUGAUUUGCUGAGACACCAGCUUCACCUUCUUAACAAGGUGCAGCUCAGUGGAAGAUGAUGACAACCAGAAGACAUGAGCUAAGGGUAAGGGm6ACUGUUCUGAAGAACCUUUCCAUUUAGUGAUCAAGAUAUGGAAGCUGAUUUCUGAAAAUGCUCAGUGUGUACUCUAAUUAUUUAUGGUACCAUUUGAAUUGUAm6ACUUGCAUUUUAGCAGUGCAUGUUUCUAAUUGACUUACUGGGAAACUGAAUAAAAUAUGCCUCUUAUUAUCA
Sequence (MODOMICS CODE ENCODING)	GCAAAGUAAAGGAAGAUAAAUUUAAAGGAAGUCUUUCUGAAGGAAUGAAAGUUGAGCAGGAAUCUUCGUCUGAUGAUAACCUUGAAGACUUUGAUGUAGAGGAAGAAGAUGAAGAAGCCCUAAUAGAACAGAGAAGAAUCCAAAGGCAGGCAAUUGUUCAGAAAUAUAAAUACCUUGCUGAAGAUAGCAACAUGUCUGUGCCAUCUGAACCAAGCAGCCCCCAGAGCAGUACGAGAACACGAUCACCAUCUCCAGAUGACAUUCUGGAGCGAGUAGCUGCUGAUGUUAAAGAGUAUGAACGGGAAAAUGUUGAUACAUUUGAGGCCUCAGUGAAAGCCAAGCAUAAUCUAAUGACAGUUGAACAGAAUAAUGGUUCAUCUCAGAAGAAGUUGUUGGCACCUGAUAUGUUUACAGAAUCUGAUGAUAUGUUUGCUGCGUAUUUUGAUAGUGCUCGUCUUCGGGCCGCUGGCAUUGGAAAAGAUUUCAAAGAGAAUCCCAACCUCAGAGAUAACUGGACCGAUGCAGAAGGCUAUUAUCGUGUGAACAUAGGUGAAGUCCUAGAUAAACGUUACAAUGUGUAUGGCUACACUGGGCAAGGUGUAUUCAGUAAUGUUGUACGAGCCAGAGAUAAUGCAAGAGCCAACCAAGAAGUGGCUGUAAAGAUCAUCAGAAACAAUGAGCUCAUGCAAAAGACUGGUUUAAAAGAAUUAGAGUUCUUGAAAAAACUUAAUGAUGCUGAUCCUGAUGACAAAUUUCAUUGUCUGAGACUCUUCAGGCACUUCUAUCACAAGCAGCAUCUUUGUCUGGUAUUCGAGCCUCUCAGCAUGAACUUACGAGAGGUGUUAAAAAAAUAUGGUAAAGAUGUUGGUCUUCAUAUUAAAGCUGUAAGAUCCUAUAGUCAGCAGUUGUUCCUGGCAUUGAAACUCCUUAAAAGAUGCAAUAUCCUACAUGCAGAUAUCAAGCCAGACAAUAUCCUGGUUAAUGAAUCCAAAACUAUUUUAAAGCUUUGCGAUUUUGGGUCGGCUUCACAUGUUGCGGAUAAUGACAUA2000000006ACACCUUAUCUUGUCAGUAGAUUUUAUCGUGCUCCUGAAAUCACAGCUGCACGAGUUCAUUCAUGAGGAAGGGAACCAUAGCAAGUUCAUCCUCCUCAGGUGGAAUGAAGGUAGUUGUGACAGGAGUCUUGAUCAUGUCGGGCAAGAGUAGCAAAACAGUUGUGGAAAAUCCUCGACUUUAGAAGACUGCUCUUGAUUAUUCAAGUUAUAGGUAAAAGCUAUGACUAUGGUAUAGAUAUGUGGUCUGUAGGUUGCACCUUAUACGAACUCUAUACUGGAAAAAUUUUAUUCCCUGGCAAAACCAAUAACCAUAUGCUGAAGCUUGCAAUGGAUCUCAAAGGAAAGAUGCCAAAUAAGAUGAUUCGAAAAGGUGUGUUCAAAGAUCAGCAUUUUGAUCAAAAUCUCAACUUCAUGUACAUAGAAGUUGAUAAAGUA2000000006ACAGAGAGGGAGAAAGUUACUGUUAUGAGCACCAUUAAUCCAACUAAGG2000000006ACCUGUUGGCUG2000000006ACUUGAUUGGGUGCCAGAGACUUCCUGAAGACCAACGUAAGAAAGUACACCAGCUAAAGG2000000006ACUUGUUGGACCAGAUUCUGAUGUUGGACCCAGCUAAACGAAUUAGCAUCAACCAGGCCCUACAGCACGCCUUCA2000000009UCCAGGAAAAAAUUUAA2000000006ACAAGAUGAAGAAACUCCAAGGGUUUGAGUAAAUACAAAG2000000006ACUGAAGAAAUUUCACAGCAGUUUAUUAAUGUAUAUAA2000000006ACUUAUAAAUAUUUCUCCAGCAAAUUUGAGGAAGCAUGAUAUAUUUGAAUUA2000000006ACACCAAGGGUGAUAUUUCUUUUAGAGAUGUUAGUUAAUCUGUUUUGUGUCUUACGUGAAAUUUCACUGUAGACUGUUUUAAAUUGCCAAGACUGCACAAAAUUACAGUGCUAAUGUAUAUGGUUGCAGUUCACAUAAAG2000000006ACAAAAGCAUCUGUUAUGAAAUGAGUAGUAAUAUUGGGUGGUUGAUUUGUUCUUAGCAGACUUGGCUUCAUUUUGGUCUUGAGAUAAAAUGGCCAGCAUAAAUGCUGUUUAUAUUCACGUUUUCCUAGGUGUGUGUGUGCAGGCCACAGCAGCAUGCCCUUGGUGUAGUCAGUGCCGAAAGGGGUCUGUUCCUUCUUGAGCCUGCCUGCAGGGAUGGUCUCCUUUUAAAGCAGGUUGUGUGCAGCAUUCAGUACACUGAAGGCAUAAACCUUCCACUCUUGAACAAAGCAGCUGCUUUUUAAAAGCGAGAAAAAGGAAAACGGGGCACAGGCCAUUCGACGCCUUCUCCAAGGGGUCUGAUUUGCUGAGACACCAGCUUCACCUUCUUAACAAGGUGCAGCUCAGUGGAAGAUGAUGACAACCAGAAGACAUGAGCUAAGGGUAAGGG2000000006ACUGUUCUGAAGAACCUUUCCAUUUAGUGAUCAAGAUAUGGAAGCUGAUUUCUGAAAAUGCUCAGUGUGUACUCUAAUUAUUUAUGGUACCAUUUGAAUUGUA2000000006ACUUGCAUUUUAGCAGUGCAUGUUUCUAAUUGACUUACUGGGAAACUGAAUAAAAUAUGCCUCUUAUUAUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1050	1485	1534	1546	1606	1681	1698	1738	1776	1828	1968	2416	2519
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	6:4056393:+	6:4058806:+	6:4060453:+	6:4060465:+	6:4060525:+	6:4060600:+	6:4060617:+	6:4060657:+	6:4060695:+	6:4060747:+	6:4060887:+	6:4064809:+	6:4064912:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	8cMbzB4aD5Se ArijeGVTwYBw BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	ArijeGVTwYBw WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8