Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000534658
Gene ID: ENSG00000118515
Gene Name: SGK1
Sequence (UNICHARACTER ENCODING) GCGCЖGCAUACGCCGAGCCGGUCUUUGAGCGCUAACGUCUUUCUGUCUCCCCGCGGUGGUGAUGACGGUGAAAACUGAGGCUGCUAAGGGCACCCUCACUUACUCCAGGAUGAGGGGCAUGGUGGCAAUUCUCAUCGCUUUCAUGAAGCAGAGGAGGAUGGGUCUGAACGACUPUAUUCAGAAGAUUGCCAAUAACUCCUAUGCAUGCAAACACCCUGAAGUUCAGUCCAUCUUGAAGAUCUCCCAACCUCAGGAGCCUGAGCUUAUGAAUGCCAACCCUUCUCCUCCACCAAGUCCUUCUCAGCAAAUCAACCUUGGCCCGUCGUCCAAUCCUCAUGCUAAЖCCAUCUGACUUUCACUUCUUGAAAGUGAUCGGAAAGGGCAGUUUUGGAAAGGUAAUUUCAAAUCUGAAGAUCUUUUGGUACACUUCCUUCAUGUCCUCUUUUGUAUUCUCCCUGGAUGAGGAUAGAAAAAUGAUUUUUUUAAAUUGAAAUUUCAGGUUCUUCUAGCAAGACACAAGGCAGAAGAAGUGUUCUAUGCAGUCAAAGUUUUACЖGAAGAAAGCAAUCCUGAAAAAGAAAGAGGAGAAGCAUAUUAUGUCGGAGCGGAAUGUUCUGUUGAAGAAUGUGAAGCACCCUUUCCUGGUGGGCCUUCACUUCUCUUUCCAGЖCUGCUGACAAAUUGUACUUUGUCCUAGACUACЖUUAAUGGUGGAGAGUUGUUCUACCAUCUCCAGAGGGAACGCUGCUUCCUGGAACCACGGGCUC
Sequence (SHORT NAMES ENCODING) GCGCm6AGCAUACGCCGAGCCGGUCUUUGAGCGCUAACGUCUUUCUGUCUCCCCGCGGUGGUGAUGACGGUGAAAACUGAGGCUGCUAAGGGCACCCUCACUUACUCCAGGAUGAGGGGCAUGGUGGCAAUUCUCAUCGCUUUCAUGAAGCAGAGGAGGAUGGGUCUGAACGACUYUAUUCAGAAGAUUGCCAAUAACUCCUAUGCAUGCAAACACCCUGAAGUUCAGUCCAUCUUGAAGAUCUCCCAACCUCAGGAGCCUGAGCUUAUGAAUGCCAACCCUUCUCCUCCACCAAGUCCUUCUCAGCAAAUCAACCUUGGCCCGUCGUCCAAUCCUCAUGCUAAm6ACCAUCUGACUUUCACUUCUUGAAAGUGAUCGGAAAGGGCAGUUUUGGAAAGGUAAUUUCAAAUCUGAAGAUCUUUUGGUACACUUCCUUCAUGUCCUCUUUUGUAUUCUCCCUGGAUGAGGAUAGAAAAAUGAUUUUUUUAAAUUGAAAUUUCAGGUUCUUCUAGCAAGACACAAGGCAGAAGAAGUGUUCUAUGCAGUCAAAGUUUUACm6AGAAGAAAGCAAUCCUGAAAAAGAAAGAGGAGAAGCAUAUUAUGUCGGAGCGGAAUGUUCUGUUGAAGAAUGUGAAGCACCCUUUCCUGGUGGGCCUUCACUUCUCUUUCCAGm6ACUGCUGACAAAUUGUACUUUGUCCUAGACUACm6AUUAAUGGUGGAGAGUUGUUCUACCAUCUCCAGAGGGAACGCUGCUUCCUGGAACCACGGGCUC
Sequence (MODOMICS CODE ENCODING) GCGC2000000006AGCAUACGCCGAGCCGGUCUUUGAGCGCUAACGUCUUUCUGUCUCCCCGCGGUGGUGAUGACGGUGAAAACUGAGGCUGCUAAGGGCACCCUCACUUACUCCAGGAUGAGGGGCAUGGUGGCAAUUCUCAUCGCUUUCAUGAAGCAGAGGAGGAUGGGUCUGAACGACU2000000009UUAUUCAGAAGAUUGCCAAUAACUCCUAUGCAUGCAAACACCCUGAAGUUCAGUCCAUCUUGAAGAUCUCCCAACCUCAGGAGCCUGAGCUUAUGAAUGCCAACCCUUCUCCUCCACCAAGUCCUUCUCAGCAAAUCAACCUUGGCCCGUCGUCCAAUCCUCAUGCUAA2000000006ACCAUCUGACUUUCACUUCUUGAAAGUGAUCGGAAAGGGCAGUUUUGGAAAGGUAAUUUCAAAUCUGAAGAUCUUUUGGUACACUUCCUUCAUGUCCUCUUUUGUAUUCUCCCUGGAUGAGGAUAGAAAAAUGAUUUUUUUAAAUUGAAAUUUCAGGUUCUUCUAGCAAGACACAAGGCAGAAGAAGUGUUCUAUGCAGUCAAAGUUUUAC2000000006AGAAGAAAGCAAUCCUGAAAAAGAAAGAGGAGAAGCAUAUUAUGUCGGAGCGGAAUGUUCUGUUGAAGAAUGUGAAGCACCCUUUCCUGGUGGGCCUUCACUUCUCUUUCCAG2000000006ACUGCUGACAAAUUGUACUUUGUCCUAGACUAC2000000006AUUAAUGGUGGAGAGUUGUUCUACCAUCUCCAGAGGGAACGCUGCUUCCUGGAACCACGGGCUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 5 174 343 554 667 700
Modification Positions m6A Y m6A m6A m6A m6A
Genomic Coordinates 6:134174864:- 6:134174550:- 6:134173513:- 6:134173302:- 6:134173070:- 6:134173037:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
KENzb7mwdBd9
Lny8GcCeVGc9
UKen6WEino9G
dknfVe6BK8aP
Mk6ShCGm6RBJ
dknfVe6BK8aP
Mk6ShCGm6RBJ
3kRDPWwiRCgi
L6w2k2VEv4EY
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
dknfVe6BK8aP
Mk6ShCGm6RBJ
3kRDPWwiRCgi
L6w2k2VEv4EY