General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000540980
Gene ID:	ENSG00000112592
Gene Name:	TBP
Sequence (UNICHARACTER ENCODING)	GGCGGAAGUGACAUUAUCAACGCGCGCCAGGGGUUCAGUGAGGUCGGGCAGGUUCGCUGUGGCGGGCGCCUGGGCCGCCGGCUGUUUAЖCUUCGCUUCCGCUGGCCCAUAGUGAUCUUUGCAGUGACCCAGGGUGCCAUGACUCCCGGAAUCCCUAUCUPUAGUCCAAUGAUGCCUUAUGGCACUGGACUGACCCCACAGCCUAUUCAGAACACCAAUAGUCUGUCUAUUUUGGAAGAGCAACAAAGGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGCAGUGGCAGCUGCAGCCGUUCAGCAGUCAACGUCCCAGCAGGCAACACAGGGAACCUCAGGCCAGGCACCACAGCUCUUCCACUCACAGЖCUCUCACAACUGCACCCUUGCCGGGCACCACUCCACUGUAUCCCUCCCCCAUGACUCCCAUGACCCCCAUCACUCCUGCCACGCCAGCUUCGGAGAGUUCUGGGAUUGUACCGCAGCUGCAAAAUAUUGUAUCCACAGUGAAUCUUGGUUGUAAЖCUUGACCUAAAGACCAUUGCACUUCGUGCCCGAAACGCCGAAUAUAAUCCCAAGCGGUUUGCUGCGGUAAUCAUGAGGAUAAGAGAGCCACGAACCACGGCACUGAUUUUCAGUUCUGGGAAAAUGGUGUGCACAGGAGCCAAGAGUGAAGAЖCAGUCCAGACUGGCAGCAAGAAAAUAUGCUAGAGUUGUACAGAAGUUGGGUUUUCCAGCUAAGUUCUUGGACUUCAAGAUUCAGAAUAUGGUGGGGAGCUGUGAUGUGAAGUUUCCUAUAAGGUUAGAAGGCCUUGUGCUCACCCACCAACAAUUUAGUAGUUAUGAGCCAGAGUUAUUUCCUGGUUUAAUCUACAGAAUGAUCAAACCCAGAAUUGUUCUCCUUAUUUUUGUUUCUGGAAAAGUUGUAUUAACAGGUGCUAAAGUCAGAGCAGAAAUUUAUGAAGCAUUUGAAAACAUCUACCCUAUUCUAAAGGGAUUCAGGAAGACGACGUAAUGGCUCUCAUGUACCCUUGCCUCCCCCACCCCCUUCUUUUUUUUUUUUUAAЖCAAAUCAGUUUGUUUUGGUACCUPUAAAUGGUGGUGUUGUGAGAAGAUGGAUGUUGAGUUGCAGGGUGUGGCACCAGGUGAUGCCCUUCUGUAAGUGCCCACCGCGGGAUGCCGGGAAGGGGCAUUAUUUGUGCACUGAGAACACCGCGCAGCGUGACUGUGAGUUGCUCAUACCGUGCUGCUAUCUGGGCAGCGCUGCCCAUUUAUUUAUAUGUAGAUUUUAAЖCACUGCUGUUGACAAGUUGGUUUGAGGGAGAAAACUPUAAGUGUUAAAGCCACCUCUAUAAUUGAUUGGЖCUUUUUAAUUUUAAUGUUUUUCCCCAUGAЖCCACAGUUUUUAUAUUUCUACCAGAAAAGUAAAAAUCUUUUUUAAAAGUGUUGUUUUUCUAAUUUAUAACUCCUAGGGGUUAUUUCUGUGCCAGACACAUUCCACCUCUCCAGUAUUGCAGGACAGAAUAUAUGUGUUAAUGAAAAUGAAUGGCUGUACAUAUUUUUUUCUUUCUUCAGAGUACUCUGUACAAUAAAUGCAGUUUAUAAAAGUGUUAGAUUGUUGUU
Sequence (SHORT NAMES ENCODING)	GGCGGAAGUGACAUUAUCAACGCGCGCCAGGGGUUCAGUGAGGUCGGGCAGGUUCGCUGUGGCGGGCGCCUGGGCCGCCGGCUGUUUAm6ACUUCGCUUCCGCUGGCCCAUAGUGAUCUUUGCAGUGACCCAGGGUGCCAUGACUCCCGGAAUCCCUAUCUYUAGUCCAAUGAUGCCUUAUGGCACUGGACUGACCCCACAGCCUAUUCAGAACACCAAUAGUCUGUCUAUUUUGGAAGAGCAACAAAGGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGCAGUGGCAGCUGCAGCCGUUCAGCAGUCAACGUCCCAGCAGGCAACACAGGGAACCUCAGGCCAGGCACCACAGCUCUUCCACUCACAGm6ACUCUCACAACUGCACCCUUGCCGGGCACCACUCCACUGUAUCCCUCCCCCAUGACUCCCAUGACCCCCAUCACUCCUGCCACGCCAGCUUCGGAGAGUUCUGGGAUUGUACCGCAGCUGCAAAAUAUUGUAUCCACAGUGAAUCUUGGUUGUAAm6ACUUGACCUAAAGACCAUUGCACUUCGUGCCCGAAACGCCGAAUAUAAUCCCAAGCGGUUUGCUGCGGUAAUCAUGAGGAUAAGAGAGCCACGAACCACGGCACUGAUUUUCAGUUCUGGGAAAAUGGUGUGCACAGGAGCCAAGAGUGAAGAm6ACAGUCCAGACUGGCAGCAAGAAAAUAUGCUAGAGUUGUACAGAAGUUGGGUUUUCCAGCUAAGUUCUUGGACUUCAAGAUUCAGAAUAUGGUGGGGAGCUGUGAUGUGAAGUUUCCUAUAAGGUUAGAAGGCCUUGUGCUCACCCACCAACAAUUUAGUAGUUAUGAGCCAGAGUUAUUUCCUGGUUUAAUCUACAGAAUGAUCAAACCCAGAAUUGUUCUCCUUAUUUUUGUUUCUGGAAAAGUUGUAUUAACAGGUGCUAAAGUCAGAGCAGAAAUUUAUGAAGCAUUUGAAAACAUCUACCCUAUUCUAAAGGGAUUCAGGAAGACGACGUAAUGGCUCUCAUGUACCCUUGCCUCCCCCACCCCCUUCUUUUUUUUUUUUUAAm6ACAAAUCAGUUUGUUUUGGUACCUYUAAAUGGUGGUGUUGUGAGAAGAUGGAUGUUGAGUUGCAGGGUGUGGCACCAGGUGAUGCCCUUCUGUAAGUGCCCACCGCGGGAUGCCGGGAAGGGGCAUUAUUUGUGCACUGAGAACACCGCGCAGCGUGACUGUGAGUUGCUCAUACCGUGCUGCUAUCUGGGCAGCGCUGCCCAUUUAUUUAUAUGUAGAUUUUAAm6ACACUGCUGUUGACAAGUUGGUUUGAGGGAGAAAACUYUAAGUGUUAAAGCCACCUCUAUAAUUGAUUGGm6ACUUUUUAAUUUUAAUGUUUUUCCCCAUGAm6ACCACAGUUUUUAUAUUUCUACCAGAAAAGUAAAAAUCUUUUUUAAAAGUGUUGUUUUUCUAAUUUAUAACUCCUAGGGGUUAUUUCUGUGCCAGACACAUUCCACCUCUCCAGUAUUGCAGGACAGAAUAUAUGUGUUAAUGAAAAUGAAUGGCUGUACAUAUUUUUUUCUUUCUUCAGAGUACUCUGUACAAUAAAUGCAGUUUAUAAAAGUGUUAGAUUGUUGUU
Sequence (MODOMICS CODE ENCODING)	GGCGGAAGUGACAUUAUCAACGCGCGCCAGGGGUUCAGUGAGGUCGGGCAGGUUCGCUGUGGCGGGCGCCUGGGCCGCCGGCUGUUUA2000000006ACUUCGCUUCCGCUGGCCCAUAGUGAUCUUUGCAGUGACCCAGGGUGCCAUGACUCCCGGAAUCCCUAUCU2000000009UUAGUCCAAUGAUGCCUUAUGGCACUGGACUGACCCCACAGCCUAUUCAGAACACCAAUAGUCUGUCUAUUUUGGAAGAGCAACAAAGGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGCAGUGGCAGCUGCAGCCGUUCAGCAGUCAACGUCCCAGCAGGCAACACAGGGAACCUCAGGCCAGGCACCACAGCUCUUCCACUCACAG2000000006ACUCUCACAACUGCACCCUUGCCGGGCACCACUCCACUGUAUCCCUCCCCCAUGACUCCCAUGACCCCCAUCACUCCUGCCACGCCAGCUUCGGAGAGUUCUGGGAUUGUACCGCAGCUGCAAAAUAUUGUAUCCACAGUGAAUCUUGGUUGUAA2000000006ACUUGACCUAAAGACCAUUGCACUUCGUGCCCGAAACGCCGAAUAUAAUCCCAAGCGGUUUGCUGCGGUAAUCAUGAGGAUAAGAGAGCCACGAACCACGGCACUGAUUUUCAGUUCUGGGAAAAUGGUGUGCACAGGAGCCAAGAGUGAAGA2000000006ACAGUCCAGACUGGCAGCAAGAAAAUAUGCUAGAGUUGUACAGAAGUUGGGUUUUCCAGCUAAGUUCUUGGACUUCAAGAUUCAGAAUAUGGUGGGGAGCUGUGAUGUGAAGUUUCCUAUAAGGUUAGAAGGCCUUGUGCUCACCCACCAACAAUUUAGUAGUUAUGAGCCAGAGUUAUUUCCUGGUUUAAUCUACAGAAUGAUCAAACCCAGAAUUGUUCUCCUUAUUUUUGUUUCUGGAAAAGUUGUAUUAACAGGUGCUAAAGUCAGAGCAGAAAUUUAUGAAGCAUUUGAAAACAUCUACCCUAUUCUAAAGGGAUUCAGGAAGACGACGUAAUGGCUCUCAUGUACCCUUGCCUCCCCCACCCCCUUCUUUUUUUUUUUUUAA2000000006ACAAAUCAGUUUGUUUUGGUACCU2000000009UUAAAUGGUGGUGUUGUGAGAAGAUGGAUGUUGAGUUGCAGGGUGUGGCACCAGGUGAUGCCCUUCUGUAAGUGCCCACCGCGGGAUGCCGGGAAGGGGCAUUAUUUGUGCACUGAGAACACCGCGCAGCGUGACUGUGAGUUGCUCAUACCGUGCUGCUAUCUGGGCAGCGCUGCCCAUUUAUUUAUAUGUAGAUUUUAA2000000006ACACUGCUGUUGACAAGUUGGUUUGAGGGAGAAAACU2000000009UUAAGUGUUAAAGCCACCUCUAUAAUUGAUUGG2000000006ACUUUUUAAUUUUAAUGUUUUUCCCCAUGA2000000006ACCACAGUUUUUAUAUUUCUACCAGAAAAGUAAAAAUCUUUUUUAAAAGUGUUGUUUUUCUAAUUUAUAACUCCUAGGGGUUAUUUCUGUGCCAGACACAUUCCACCUCUCCAGUAUUGCAGGACAGAAUAUAUGUGUUAAUGAAAAUGAAUGGCUGUACAUAUUUUUUUCUUUCUUCAGAGUACUCUGUACAAUAAAUGCAGUUUAUAAAAGUGUUAGAUUGUUGUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	89	160	453	608	761	1149	1173	1374	1411	1444	1474
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A
Genomic Coordinates	6:170554421:+	6:170561819:+	6:170562112:+	6:170564578:+	6:170569618:+	6:170572317:+	6:170572341:+	6:170572542:+	6:170572579:+	6:170572612:+	6:170572642:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V msuJfBpJvM5H VyCX26p5UBRL KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8