General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000680495
Gene ID:	ENSG00000130340
Gene Name:	SNX9
Sequence (UNICHARACTER ENCODING)	GGGAGUAGCCGAGCGCCCAGCGGCUGGGCCUGAGCGUCGAGACUCGGGGCCGAGGCGGAGGAGCGGCCGCCGCGCCGGGGCCCAGCCGGAGCCGCCGCCCUCGCCCUUGCCUUUGCCUGCGCGGCUCAGAAUCACCAUCCGCGGCGCGGGAGACGAGCCGGCCGUCCCGGGCCGGGGGACCCGCCCGCCAUGGCCACCAAGGCCGCUUUGAAGAGGAAUUUAUCAAAAUGCGCAUGGAGAGACUUCAGGCCUGGAUGACCAGGAUGUGUCGCCAUCCAGUAAUCUCAGAAAGUGAAGUUUUCCAGCAGUUCCUAAAUUUCCGAGAUGAGAAGGAAUGGAAAACUGGAAAGAGGAAGGCCGAGAGAGAUGAGCUGGCGGGAGUCAUGAUAUUUUCCACCAUGGAACCAGAGGCACCUGACUUGGACUUAGUAGAAAUAGAGCAGAAGUGCGAGGCUGUGGGGAAGUUCACCAAGGCCAUGGAUGACGGCGUGAAGGAGCUGCUGACGGUGGGGCAGGAGCACUGGAAGCGCUGCACGGGCCCAUUACCCAAGGAAUAUCAGAAGAUAGGAAAGGCCUUGCAGAGUUUGGCCACAGUGUUCAGUUCCAGUGGCUAUCAAGGUGAAACAGAUCUCAAUGAUGCAAUAACAGAAGCAGGAAAGACUUAUGAAGAAAUUGCCAGUCUCGUGGCAGAACAGCCAAAGAAAGAUCUCCAUUUCCUGAUGGAAUGUAAUCACGAGUAUAAAGGUUUUCUUGGCUGCUUCCCUGACAUCAUUGGCACUCACAAGGGAGCAAUAGAAAAAGUGAAAGAAAGUGACAAACUAGUUGCAACAAGUAAAAUCACCCUACЖAGACAAACAGAACAUGGUGAAGAGAGUCAGCAUCAUGUCUUACGCGUUGCAAGCUGAGAUGAAUCACUUUCACAGUAACCGGAUCUAUGAUUACAACAGUGUCAPCCGCCUGUACCUGGAGCAGCAAGUGCAAUUUUACGAAACGAUUGCAGAAAAGCUGAGGCAGGCCCUCAGCCGCUUUCCAGUGAUGUAGGACAGAACGGGCCUUGAAGAGAAUGCCGCGUGCUUUCUCCUGACUUGGGGCAAUGCAAUUCAAAACUUUUUUUCCCCUAUUAUUCAGAAAAAAAAGGAAACAAAACCAAAAAGAAAGAGUUGCAAAAAACUGCAUUUAUUUUAUUAGCCACCCUAAAUGCGUCAGUUAUUUAGGGAUGGUCUUUUGUUCAUUUCCGCAPCCAUUAUUUAAACCAGUGGAAAUUGUCUCUAUUUUUGGAAAGUACUUAAAAGUUACCAGAAUUUUCAAUGGAAAAUGAGGGGUUUCUCCCCACUGAUAUUUUACAUAGAGUCAUAAUUUAUAUGUCUUAUAAAUUAUAAGUCUUAUAUAAUUUAUAAGUCUCCCACAAUCUUCCAGUUCUUACCCAGUGUCAGAUAAUUAAUUACUAAUUACUUUCUUAAAAACAUGAACUAUGCCAGAAUAAAAAAUAUCUAUGUUUGUAUAUUUUUAUAЖCUCCUUUCAGUCCUCUGGGGCUCCUGUCAUUGAGGGAAGUCGUUACGCCUUUCACUGCCACAGUUACAGCUCAAGUGCUUACACUUCAAGAGGGAGGACGCUGGGGGCCCCUGGGGCUGCUAGUGCCAUCGUGGUGUGUGGCAGGUGGGCCAPCCCAUGUCCCUCCAGGGGGACCCCACAGCCUGGCAGAUGAGCAGAUACCCCUGGCCACCCAUGUCCUCAGCGACAUUUCUGAUGUGCUGCUCUUAUGUGAGGACCAGUGCUUUCUCUCUUUGCACUUCCUUCCUAAUCUUGGUUAAGGCAUGUUUUAUGCCAUGAAGAAUACAUUAGAAGAAUUGAGGGЖCUUUGUAGAGAAUUUUGUGGCUUUGGUCCAACGGGUGAGUGGCUGUGCGGAGGCCUGUGUUCGGGAGGGCCUGGGAGAAGGAGGGCACCCAGCACCCCGGCGUCUCUGGCCCUUUCUUAUUCUUUGGCUCCUCAPCCACCGUGAUGAGAAGCGCUGCUGUGGCCACGGCACACUGCUUGGCUUGGGUGGCGGGUUCAUGGCCAGUUGGUGUCAUCAGCAAAGAGAAAAAGCACAGGUUAGCUCCCCAUUAGAUGGAAAAGUGUAGGGACUGAGAAGGGCUGCAGCCUCAGCAGUGUACAGAGUCCCCGGCGCUCUGAGGUUGGAGAGAAAGAЖCAGACCAGCGCCCUUCCCGACUACAPCCGAAACUUCACACAGGGUGUUUCUGAGCACCAGCACUUCCAGCGCUUCACUUAACGGCAUAAAGCAAAACAGGACCUUGGCACACCGUCAGCUCGAACUCAACACUGGCAGCCACCGUCUCACCCCUGCGGAGGAGCGCUCCCGUCUCCCACAGGUGCCUUACCGCGUUCCCUCCCGCUGCUUUCAUUUUUCUGACCUAAUAAUUACGGGAAAUGGAAAGUCUGGGCCAGCAUCAAUAAAAUGACACCAAAAAUAAGUAGAUGAAAUCAAAUGAAUAUGAGAACAUCUUGUUCUUCAAUAUCACGGGUUUUUGUUAAUGUUUCAUAAGUAʍUUCUCCCCACUUGAUUUUUCUUCUAUAAAAUCCCAUAGAACAAUGUUUAUGCUAUAGCCAUUUAAUAUAUGUACAAAUUGUAAAGAAUAUGUAUAAAUGUUUUACACGAAUGUAAGAGCAUGUAGAAGCCAACAUAUAAAUAAAUUGUUUAAAAAAAC
Sequence (SHORT NAMES ENCODING)	GGGAGUAGCCGAGCGCCCAGCGGCUGGGCCUGAGCGUCGAGACUCGGGGCCGAGGCGGAGGAGCGGCCGCCGCGCCGGGGCCCAGCCGGAGCCGCCGCCCUCGCCCUUGCCUUUGCCUGCGCGGCUCAGAAUCACCAUCCGCGGCGCGGGAGACGAGCCGGCCGUCCCGGGCCGGGGGACCCGCCCGCCAUGGCCACCAAGGCCGCUUUGAAGAGGAAUUUAUCAAAAUGCGCAUGGAGAGACUUCAGGCCUGGAUGACCAGGAUGUGUCGCCAUCCAGUAAUCUCAGAAAGUGAAGUUUUCCAGCAGUUCCUAAAUUUCCGAGAUGAGAAGGAAUGGAAAACUGGAAAGAGGAAGGCCGAGAGAGAUGAGCUGGCGGGAGUCAUGAUAUUUUCCACCAUGGAACCAGAGGCACCUGACUUGGACUUAGUAGAAAUAGAGCAGAAGUGCGAGGCUGUGGGGAAGUUCACCAAGGCCAUGGAUGACGGCGUGAAGGAGCUGCUGACGGUGGGGCAGGAGCACUGGAAGCGCUGCACGGGCCCAUUACCCAAGGAAUAUCAGAAGAUAGGAAAGGCCUUGCAGAGUUUGGCCACAGUGUUCAGUUCCAGUGGCUAUCAAGGUGAAACAGAUCUCAAUGAUGCAAUAACAGAAGCAGGAAAGACUUAUGAAGAAAUUGCCAGUCUCGUGGCAGAACAGCCAAAGAAAGAUCUCCAUUUCCUGAUGGAAUGUAAUCACGAGUAUAAAGGUUUUCUUGGCUGCUUCCCUGACAUCAUUGGCACUCACAAGGGAGCAAUAGAAAAAGUGAAAGAAAGUGACAAACUAGUUGCAACAAGUAAAAUCACCCUACm6AAGACAAACAGAACAUGGUGAAGAGAGUCAGCAUCAUGUCUUACGCGUUGCAAGCUGAGAUGAAUCACUUUCACAGUAACCGGAUCUAUGAUUACAACAGUGUCAYCCGCCUGUACCUGGAGCAGCAAGUGCAAUUUUACGAAACGAUUGCAGAAAAGCUGAGGCAGGCCCUCAGCCGCUUUCCAGUGAUGUAGGACAGAACGGGCCUUGAAGAGAAUGCCGCGUGCUUUCUCCUGACUUGGGGCAAUGCAAUUCAAAACUUUUUUUCCCCUAUUAUUCAGAAAAAAAAGGAAACAAAACCAAAAAGAAAGAGUUGCAAAAAACUGCAUUUAUUUUAUUAGCCACCCUAAAUGCGUCAGUUAUUUAGGGAUGGUCUUUUGUUCAUUUCCGCAYCCAUUAUUUAAACCAGUGGAAAUUGUCUCUAUUUUUGGAAAGUACUUAAAAGUUACCAGAAUUUUCAAUGGAAAAUGAGGGGUUUCUCCCCACUGAUAUUUUACAUAGAGUCAUAAUUUAUAUGUCUUAUAAAUUAUAAGUCUUAUAUAAUUUAUAAGUCUCCCACAAUCUUCCAGUUCUUACCCAGUGUCAGAUAAUUAAUUACUAAUUACUUUCUUAAAAACAUGAACUAUGCCAGAAUAAAAAAUAUCUAUGUUUGUAUAUUUUUAUAm6ACUCCUUUCAGUCCUCUGGGGCUCCUGUCAUUGAGGGAAGUCGUUACGCCUUUCACUGCCACAGUUACAGCUCAAGUGCUUACACUUCAAGAGGGAGGACGCUGGGGGCCCCUGGGGCUGCUAGUGCCAUCGUGGUGUGUGGCAGGUGGGCCAYCCCAUGUCCCUCCAGGGGGACCCCACAGCCUGGCAGAUGAGCAGAUACCCCUGGCCACCCAUGUCCUCAGCGACAUUUCUGAUGUGCUGCUCUUAUGUGAGGACCAGUGCUUUCUCUCUUUGCACUUCCUUCCUAAUCUUGGUUAAGGCAUGUUUUAUGCCAUGAAGAAUACAUUAGAAGAAUUGAGGGm6ACUUUGUAGAGAAUUUUGUGGCUUUGGUCCAACGGGUGAGUGGCUGUGCGGAGGCCUGUGUUCGGGAGGGCCUGGGAGAAGGAGGGCACCCAGCACCCCGGCGUCUCUGGCCCUUUCUUAUUCUUUGGCUCCUCAYCCACCGUGAUGAGAAGCGCUGCUGUGGCCACGGCACACUGCUUGGCUUGGGUGGCGGGUUCAUGGCCAGUUGGUGUCAUCAGCAAAGAGAAAAAGCACAGGUUAGCUCCCCAUUAGAUGGAAAAGUGUAGGGACUGAGAAGGGCUGCAGCCUCAGCAGUGUACAGAGUCCCCGGCGCUCUGAGGUUGGAGAGAAAGAm6ACAGACCAGCGCCCUUCCCGACUACAYCCGAAACUUCACACAGGGUGUUUCUGAGCACCAGCACUUCCAGCGCUUCACUUAACGGCAUAAAGCAAAACAGGACCUUGGCACACCGUCAGCUCGAACUCAACACUGGCAGCCACCGUCUCACCCCUGCGGAGGAGCGCUCCCGUCUCCCACAGGUGCCUUACCGCGUUCCCUCCCGCUGCUUUCAUUUUUCUGACCUAAUAAUUACGGGAAAUGGAAAGUCUGGGCCAGCAUCAAUAAAAUGACACCAAAAAUAAGUAGAUGAAAUCAAAUGAAUAUGAGAACAUCUUGUUCUUCAAUAUCACGGGUUUUUGUUAAUGUUUCAUAAGUAAmUUCUCCCCACUUGAUUUUUCUUCUAUAAAAUCCCAUAGAACAAUGUUUAUGCUAUAGCCAUUUAAUAUAUGUACAAAUUGUAAAGAAUAUGUAUAAAUGUUUUACACGAAUGUAAGAGCAUGUAGAAGCCAACAUAUAAAUAAAUUGUUUAAAAAAAC
Sequence (MODOMICS CODE ENCODING)	GGGAGUAGCCGAGCGCCCAGCGGCUGGGCCUGAGCGUCGAGACUCGGGGCCGAGGCGGAGGAGCGGCCGCCGCGCCGGGGCCCAGCCGGAGCCGCCGCCCUCGCCCUUGCCUUUGCCUGCGCGGCUCAGAAUCACCAUCCGCGGCGCGGGAGACGAGCCGGCCGUCCCGGGCCGGGGGACCCGCCCGCCAUGGCCACCAAGGCCGCUUUGAAGAGGAAUUUAUCAAAAUGCGCAUGGAGAGACUUCAGGCCUGGAUGACCAGGAUGUGUCGCCAUCCAGUAAUCUCAGAAAGUGAAGUUUUCCAGCAGUUCCUAAAUUUCCGAGAUGAGAAGGAAUGGAAAACUGGAAAGAGGAAGGCCGAGAGAGAUGAGCUGGCGGGAGUCAUGAUAUUUUCCACCAUGGAACCAGAGGCACCUGACUUGGACUUAGUAGAAAUAGAGCAGAAGUGCGAGGCUGUGGGGAAGUUCACCAAGGCCAUGGAUGACGGCGUGAAGGAGCUGCUGACGGUGGGGCAGGAGCACUGGAAGCGCUGCACGGGCCCAUUACCCAAGGAAUAUCAGAAGAUAGGAAAGGCCUUGCAGAGUUUGGCCACAGUGUUCAGUUCCAGUGGCUAUCAAGGUGAAACAGAUCUCAAUGAUGCAAUAACAGAAGCAGGAAAGACUUAUGAAGAAAUUGCCAGUCUCGUGGCAGAACAGCCAAAGAAAGAUCUCCAUUUCCUGAUGGAAUGUAAUCACGAGUAUAAAGGUUUUCUUGGCUGCUUCCCUGACAUCAUUGGCACUCACAAGGGAGCAAUAGAAAAAGUGAAAGAAAGUGACAAACUAGUUGCAACAAGUAAAAUCACCCUAC2000000006AAGACAAACAGAACAUGGUGAAGAGAGUCAGCAUCAUGUCUUACGCGUUGCAAGCUGAGAUGAAUCACUUUCACAGUAACCGGAUCUAUGAUUACAACAGUGUCA2000000009UCCGCCUGUACCUGGAGCAGCAAGUGCAAUUUUACGAAACGAUUGCAGAAAAGCUGAGGCAGGCCCUCAGCCGCUUUCCAGUGAUGUAGGACAGAACGGGCCUUGAAGAGAAUGCCGCGUGCUUUCUCCUGACUUGGGGCAAUGCAAUUCAAAACUUUUUUUCCCCUAUUAUUCAGAAAAAAAAGGAAACAAAACCAAAAAGAAAGAGUUGCAAAAAACUGCAUUUAUUUUAUUAGCCACCCUAAAUGCGUCAGUUAUUUAGGGAUGGUCUUUUGUUCAUUUCCGCA2000000009UCCAUUAUUUAAACCAGUGGAAAUUGUCUCUAUUUUUGGAAAGUACUUAAAAGUUACCAGAAUUUUCAAUGGAAAAUGAGGGGUUUCUCCCCACUGAUAUUUUACAUAGAGUCAUAAUUUAUAUGUCUUAUAAAUUAUAAGUCUUAUAUAAUUUAUAAGUCUCCCACAAUCUUCCAGUUCUUACCCAGUGUCAGAUAAUUAAUUACUAAUUACUUUCUUAAAAACAUGAACUAUGCCAGAAUAAAAAAUAUCUAUGUUUGUAUAUUUUUAUA2000000006ACUCCUUUCAGUCCUCUGGGGCUCCUGUCAUUGAGGGAAGUCGUUACGCCUUUCACUGCCACAGUUACAGCUCAAGUGCUUACACUUCAAGAGGGAGGACGCUGGGGGCCCCUGGGGCUGCUAGUGCCAUCGUGGUGUGUGGCAGGUGGGCCA2000000009UCCCAUGUCCCUCCAGGGGGACCCCACAGCCUGGCAGAUGAGCAGAUACCCCUGGCCACCCAUGUCCUCAGCGACAUUUCUGAUGUGCUGCUCUUAUGUGAGGACCAGUGCUUUCUCUCUUUGCACUUCCUUCCUAAUCUUGGUUAAGGCAUGUUUUAUGCCAUGAAGAAUACAUUAGAAGAAUUGAGGG2000000006ACUUUGUAGAGAAUUUUGUGGCUUUGGUCCAACGGGUGAGUGGCUGUGCGGAGGCCUGUGUUCGGGAGGGCCUGGGAGAAGGAGGGCACCCAGCACCCCGGCGUCUCUGGCCCUUUCUUAUUCUUUGGCUCCUCA2000000009UCCACCGUGAUGAGAAGCGCUGCUGUGGCCACGGCACACUGCUUGGCUUGGGUGGCGGGUUCAUGGCCAGUUGGUGUCAUCAGCAAAGAGAAAAAGCACAGGUUAGCUCCCCAUUAGAUGGAAAAGUGUAGGGACUGAGAAGGGCUGCAGCCUCAGCAGUGUACAGAGUCCCCGGCGCUCUGAGGUUGGAGAGAAAGA2000000006ACAGACCAGCGCCCUUCCCGACUACA2000000009UCCGAAACUUCACACAGGGUGUUUCUGAGCACCAGCACUUCCAGCGCUUCACUUAACGGCAUAAAGCAAAACAGGACCUUGGCACACCGUCAGCUCGAACUCAACACUGGCAGCCACCGUCUCACCCCUGCGGAGGAGCGCUCCCGUCUCCCACAGGUGCCUUACCGCGUUCCCUCCCGCUGCUUUCAUUUUUCUGACCUAAUAAUUACGGGAAAUGGAAAGUCUGGGCCAGCAUCAAUAAAAUGACACCAAAAAUAAGUAGAUGAAAUCAAAUGAAUAUGAGAACAUCUUGUUCUUCAAUAUCACGGGUUUUUGUUAAUGUUUCAUAAGUA2000000090AUUCUCCCCACUUGAUUUUUCUUCUAUAAAAUCCCAUAGAACAAUGUUUAUGCUAUAGCCAUUUAAUAUAUGUACAAAUUGUAAAGAAUAUGUAUAAAUGUUUUACACGAAUGUAAGAGCAUGUAGAAGCCAACAUAUAAAUAAAUUGUUUAAAAAAAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	847	952	1239	1511	1664	1854	1989	2187	2213	2545
Modification Positions	m6A	Y	Y	m6A	Y	m6A	Y	m6A	Y	Am
Genomic Coordinates	6:157938694:+	6:157940934:+	6:157943037:+	6:157943309:+	6:157943462:+	6:157943652:+	6:157943787:+	6:157943985:+	6:157944011:+	6:157944343:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM