Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000608868
Gene ID: ENSG00000111850
Gene Name: SMIM8
Sequence (UNICHARACTER ENCODING) GGUAAGCGGCGGCUUCGGUGGUGUUGAGUGGCUGGGCGCCGGCCUGGAGGGGCCAGGGCGGCCGCACCAUCACGCUCCCGUCUCUGCCCUUCCCAGCUGCCCUGCCGGUCUCCCUCCCAGGGAGGGAGCGUCCUCUCGGAUAGCCCAAAUCUUUGCCUCUCCGUGGACUCCCUGUACCCGCACCCCAAGUCGGUGAAGCUCUCUGGCCCCACAGAGCCCAUUUCCCGUACUCACCUUGCGGGCUCCAGAGGAUGGACAGAAGAAAAAGAUAAUAAAUCAUCAUUGAUCAAGAUGUCUUCAGCACCUGAGCCUCCAACAUUCAAAAAGGAACCACCCAAAGAGAAAGAGUUUCAAAGCCCAGGGCUCAGAGGGGUGCGCACAACAACCUUAUUUCGUGCUGUGAAUCCAGAGCUCUUCAUUAAACCUAACAAACCUGUAAUGGCUUUCGGAUUGGUAACUCUUUCACUUUGCGUGGCAUAUAUUGGUUAUCUACAUGCAAUACAAGAGAAUAAAAAGGЖCCUCUAUGAAGCUAUUGAUAGUGAGGGGCACAGUUAUAUGAGGCGGAAAACAUCCAAAUGGGAUUAGUAGUGCUGGUUAGUGCAGAUGGЖCCUPUAUUAAAGGUUCUGAAAUCUUCAAAUGAAAGЖCCUUGUGAGUGUACAGUAUCAUGUUUCUUGUUCUAGAACAUGCUAAUGAAGAGAGAAGAUAGCAGUUGCAACCAGACAACUGUCGUAAAUUUUGUCCUUUCACAGCUGCAGCCAUUAUCUCAUUCUUUUUCCACAGAGUGAGCGUCAUAAUAUUUUUCUUUCCUUACCUCU
Sequence (SHORT NAMES ENCODING) GGUAAGCGGCGGCUUCGGUGGUGUUGAGUGGCUGGGCGCCGGCCUGGAGGGGCCAGGGCGGCCGCACCAUCACGCUCCCGUCUCUGCCCUUCCCAGCUGCCCUGCCGGUCUCCCUCCCAGGGAGGGAGCGUCCUCUCGGAUAGCCCAAAUCUUUGCCUCUCCGUGGACUCCCUGUACCCGCACCCCAAGUCGGUGAAGCUCUCUGGCCCCACAGAGCCCAUUUCCCGUACUCACCUUGCGGGCUCCAGAGGAUGGACAGAAGAAAAAGAUAAUAAAUCAUCAUUGAUCAAGAUGUCUUCAGCACCUGAGCCUCCAACAUUCAAAAAGGAACCACCCAAAGAGAAAGAGUUUCAAAGCCCAGGGCUCAGAGGGGUGCGCACAACAACCUUAUUUCGUGCUGUGAAUCCAGAGCUCUUCAUUAAACCUAACAAACCUGUAAUGGCUUUCGGAUUGGUAACUCUUUCACUUUGCGUGGCAUAUAUUGGUUAUCUACAUGCAAUACAAGAGAAUAAAAAGGm6ACCUCUAUGAAGCUAUUGAUAGUGAGGGGCACAGUUAUAUGAGGCGGAAAACAUCCAAAUGGGAUUAGUAGUGCUGGUUAGUGCAGAUGGm6ACCUYUAUUAAAGGUUCUGAAAUCUUCAAAUGAAAGm6ACCUUGUGAGUGUACAGUAUCAUGUUUCUUGUUCUAGAACAUGCUAAUGAAGAGAGAAGAUAGCAGUUGCAACCAGACAACUGUCGUAAAUUUUGUCCUUUCACAGCUGCAGCCAUUAUCUCAUUCUUUUUCCACAGAGUGAGCGUCAUAAUAUUUUUCUUUCCUUACCUCU
Sequence (MODOMICS CODE ENCODING) GGUAAGCGGCGGCUUCGGUGGUGUUGAGUGGCUGGGCGCCGGCCUGGAGGGGCCAGGGCGGCCGCACCAUCACGCUCCCGUCUCUGCCCUUCCCAGCUGCCCUGCCGGUCUCCCUCCCAGGGAGGGAGCGUCCUCUCGGAUAGCCCAAAUCUUUGCCUCUCCGUGGACUCCCUGUACCCGCACCCCAAGUCGGUGAAGCUCUCUGGCCCCACAGAGCCCAUUUCCCGUACUCACCUUGCGGGCUCCAGAGGAUGGACAGAAGAAAAAGAUAAUAAAUCAUCAUUGAUCAAGAUGUCUUCAGCACCUGAGCCUCCAACAUUCAAAAAGGAACCACCCAAAGAGAAAGAGUUUCAAAGCCCAGGGCUCAGAGGGGUGCGCACAACAACCUUAUUUCGUGCUGUGAAUCCAGAGCUCUUCAUUAAACCUAACAAACCUGUAAUGGCUUUCGGAUUGGUAACUCUUUCACUUUGCGUGGCAUAUAUUGGUUAUCUACAUGCAAUACAAGAGAAUAAAAAGG2000000006ACCUCUAUGAAGCUAUUGAUAGUGAGGGGCACAGUUAUAUGAGGCGGAAAACAUCCAAAUGGGAUUAGUAGUGCUGGUUAGUGCAGAUGG2000000006ACCU2000000009UUAUUAAAGGUUCUGAAAUCUUCAAAUGAAAG2000000006ACCUUGUGAGUGUACAGUAUCAUGUUUCUUGUUCUAGAACAUGCUAAUGAAGAGAGAAGAUAGCAGUUGCAACCAGACAACUGUCGUAAAUUUUGUCCUUUCACAGCUGCAGCCAUUAUCUCAUUCUUUUUCCACAGAGUGAGCGUCAUAAUAUUUUUCUUUCCUUACCUCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 518 608 612 644
Modification Positions m6A m6A Y m6A
Genomic Coordinates 6:87340207:+ 6:87340297:+ 6:87340301:+ 6:87340333:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
93arJtwJmuS9
Lny8GcCeVGc9
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
LZJKems7W2wi
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6