General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000617445
Gene ID:	ENSG00000024862
Gene Name:	CCDC28A
Sequence (UNICHARACTER ENCODING)	GUAAACAAACGGAGCUGCGGAGGAGCGGGUCCCGGGAUGUGACCGGGGCUCUGCUUGUGGCUGCGGCGGUGGCUUCUGAGGCUGUCGGGUCUUUGCGGGUUGCGGAAGGGGGCCCCAAUACCCUUCUUCUUCAGGUCUUAAGAAGCUGGCCGUGGUGCAAUAAGGAACUUAAAACAAUGGAAGAGCGGAAAGUGAAGAGGAGGAGUCCUAAGUCUUUUAGUGCCCACUGUACUCAGGUUGUCAAUGCCAAAAAAAAUGCCAUUCCAGUGAGUAAAAGCACAGGGUUUUCAAAUCCUGCAUCACAGUCAACUUCACAGCGACCAAAGUUAAAAAGAGUGAUGAAAGAAAAGACCAAACCUCAGGGUGGAGAGGGCAAAGGCGCUCAGUCAACUCCGAUCCAGCACUCCUUCCUCACUGAUGUCUCAGAUGUUCAGGAGAUGGAGAGAGGGCUGCUCAGUCUUUUGAAUGAUUUCCACUCUGGAAAACUUCAAGCAUUUGGAAAUGAAUGUUCCAUUGAACAGAUGGAACAUGUUCGGGGAAUGCAGGAGAAAUUAGCUCGCUUGAAUUUGGAGCUCUAUGGGGAGUUAGAGGAACUUCCUGAGGAUAAGAGAAAAACAGCCAGUGACUCCAAUCUGGAUAGGCUUCUGUCAGAUUUAGAAGAAUUGAAUUCUUCCAUACAAAAACUCCAUUUGGCAGAUGCACAAGAUGUUCCAAAUACUUCUGCUAGCUAAAAUGAAAUGUAGUUUGCUUUCUUGUGAUUUGAAGAGAAGCAGCAGUCUPUACUUUUCCAGCCAAAUCCAGUAGCAGAAUCAUCUUCCACAACAAGGAAUUAAAGUAAUUAAAGUGCAAGUUCAAUGAUCGUUUUCACUUACUGCUUUUAGUAAAUGUGЖCUCGCUGUAAUUCACCAUAACUGGAGGCCUAGGCCUUGUUGAAGGCUUCAUCAGGAAAUGUGACGCAGAGAUUGUGCUGCUGUGCUUCAUAUUGUUGCCUUAUGGGAUUAUACUUGAAAUGCAUUGUGCUGAUGUUCUUGЖCAGGGCGGAGGGAUUUCUCUUUCCUGAGCUCACCAAACUUAUUCCAGUGUUGAUCGCAAGCUGUUGAUGCACAGGCGUCUUGUGGCAAGCCCAGCUUCAGUUUAUGUUAGACAAUCAGUACACAUGCUGGUGUGUUUUCCAAUGGCCAGUGAUAAGAAAUUAAAUAAGUAUUUGUGAGAUUUGCUAUUUUUUAAUAAAGUAAUUGUUUUAAAUUAA
Sequence (SHORT NAMES ENCODING)	GUAAACAAACGGAGCUGCGGAGGAGCGGGUCCCGGGAUGUGACCGGGGCUCUGCUUGUGGCUGCGGCGGUGGCUUCUGAGGCUGUCGGGUCUUUGCGGGUUGCGGAAGGGGGCCCCAAUACCCUUCUUCUUCAGGUCUUAAGAAGCUGGCCGUGGUGCAAUAAGGAACUUAAAACAAUGGAAGAGCGGAAAGUGAAGAGGAGGAGUCCUAAGUCUUUUAGUGCCCACUGUACUCAGGUUGUCAAUGCCAAAAAAAAUGCCAUUCCAGUGAGUAAAAGCACAGGGUUUUCAAAUCCUGCAUCACAGUCAACUUCACAGCGACCAAAGUUAAAAAGAGUGAUGAAAGAAAAGACCAAACCUCAGGGUGGAGAGGGCAAAGGCGCUCAGUCAACUCCGAUCCAGCACUCCUUCCUCACUGAUGUCUCAGAUGUUCAGGAGAUGGAGAGAGGGCUGCUCAGUCUUUUGAAUGAUUUCCACUCUGGAAAACUUCAAGCAUUUGGAAAUGAAUGUUCCAUUGAACAGAUGGAACAUGUUCGGGGAAUGCAGGAGAAAUUAGCUCGCUUGAAUUUGGAGCUCUAUGGGGAGUUAGAGGAACUUCCUGAGGAUAAGAGAAAAACAGCCAGUGACUCCAAUCUGGAUAGGCUUCUGUCAGAUUUAGAAGAAUUGAAUUCUUCCAUACAAAAACUCCAUUUGGCAGAUGCACAAGAUGUUCCAAAUACUUCUGCUAGCUAAAAUGAAAUGUAGUUUGCUUUCUUGUGAUUUGAAGAGAAGCAGCAGUCUYUACUUUUCCAGCCAAAUCCAGUAGCAGAAUCAUCUUCCACAACAAGGAAUUAAAGUAAUUAAAGUGCAAGUUCAAUGAUCGUUUUCACUUACUGCUUUUAGUAAAUGUGm6ACUCGCUGUAAUUCACCAUAACUGGAGGCCUAGGCCUUGUUGAAGGCUUCAUCAGGAAAUGUGACGCAGAGAUUGUGCUGCUGUGCUUCAUAUUGUUGCCUUAUGGGAUUAUACUUGAAAUGCAUUGUGCUGAUGUUCUUGm6ACAGGGCGGAGGGAUUUCUCUUUCCUGAGCUCACCAAACUUAUUCCAGUGUUGAUCGCAAGCUGUUGAUGCACAGGCGUCUUGUGGCAAGCCCAGCUUCAGUUUAUGUUAGACAAUCAGUACACAUGCUGGUGUGUUUUCCAAUGGCCAGUGAUAAGAAAUUAAAUAAGUAUUUGUGAGAUUUGCUAUUUUUUAAUAAAGUAAUUGUUUUAAAUUAA
Sequence (MODOMICS CODE ENCODING)	GUAAACAAACGGAGCUGCGGAGGAGCGGGUCCCGGGAUGUGACCGGGGCUCUGCUUGUGGCUGCGGCGGUGGCUUCUGAGGCUGUCGGGUCUUUGCGGGUUGCGGAAGGGGGCCCCAAUACCCUUCUUCUUCAGGUCUUAAGAAGCUGGCCGUGGUGCAAUAAGGAACUUAAAACAAUGGAAGAGCGGAAAGUGAAGAGGAGGAGUCCUAAGUCUUUUAGUGCCCACUGUACUCAGGUUGUCAAUGCCAAAAAAAAUGCCAUUCCAGUGAGUAAAAGCACAGGGUUUUCAAAUCCUGCAUCACAGUCAACUUCACAGCGACCAAAGUUAAAAAGAGUGAUGAAAGAAAAGACCAAACCUCAGGGUGGAGAGGGCAAAGGCGCUCAGUCAACUCCGAUCCAGCACUCCUUCCUCACUGAUGUCUCAGAUGUUCAGGAGAUGGAGAGAGGGCUGCUCAGUCUUUUGAAUGAUUUCCACUCUGGAAAACUUCAAGCAUUUGGAAAUGAAUGUUCCAUUGAACAGAUGGAACAUGUUCGGGGAAUGCAGGAGAAAUUAGCUCGCUUGAAUUUGGAGCUCUAUGGGGAGUUAGAGGAACUUCCUGAGGAUAAGAGAAAAACAGCCAGUGACUCCAAUCUGGAUAGGCUUCUGUCAGAUUUAGAAGAAUUGAAUUCUUCCAUACAAAAACUCCAUUUGGCAGAUGCACAAGAUGUUCCAAAUACUUCUGCUAGCUAAAAUGAAAUGUAGUUUGCUUUCUUGUGAUUUGAAGAGAAGCAGCAGUCU2000000009UUACUUUUCCAGCCAAAUCCAGUAGCAGAAUCAUCUUCCACAACAAGGAAUUAAAGUAAUUAAAGUGCAAGUUCAAUGAUCGUUUUCACUUACUGCUUUUAGUAAAUGUG2000000006ACUCGCUGUAAUUCACCAUAACUGGAGGCCUAGGCCUUGUUGAAGGCUUCAUCAGGAAAUGUGACGCAGAGAUUGUGCUGCUGUGCUUCAUAUUGUUGCCUUAUGGGAUUAUACUUGAAAUGCAUUGUGCUGAUGUUCUUG2000000006ACAGGGCGGAGGGAUUUCUCUUUCCUGAGCUCACCAAACUUAUUCCAGUGUUGAUCGCAAGCUGUUGAUGCACAGGCGUCUUGUGGCAAGCCCAGCUUCAGUUUAUGUUAGACAAUCAGUACACAUGCUGGUGUGUUUUCCAAUGGCCAGUGAUAAGAAAUUAAAUAAGUAUUUGUGAGAUUUGCUAUUUUUUAAUAAAGUAAUUGUUUUAAAUUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	780	890	1031
Modification Positions	Y	m6A	m6A
Genomic Coordinates	6:138792852:+	6:138792962:+	6:138793103:+
Level of Experimental Evidence	3	3	3
Level of Experimental Reliability	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC Lny8GcCeVGc9 LZJKems7W2wi BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8