General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000430889
Gene ID:	ENSG00000198353
Gene Name:	HOXC4
Sequence (UNICHARACTER ENCODING)	AЖCUUUACAGGGUCGCUAGCUAGUAGGAGGGCUUUAUGGAGCAGAAAAACGACAAAGCGAGAAAAAUUAUUUUCCACUCCAGAAAUUAAUGAUCAUGAGCUCGUAUUUGAUGGЖCUCUAACUACAUCGAUCCGAAAUUUCCUCCAUGCGAAGAAUAUUCGCAAAAUAGCUACAUCCCUGAACACAGUCCGGAAUAUUACGGCCGGACCAGGGAAUCGGGAUUCCAGCAUCACCACCAGGAGCUGUACCCACCACCGCCUCCGCGCCCUAGCUACCCUGAGCGCCAGUAUAGCUGCACCAGUCUCCAGGGGCCCGGCAAUUCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAUCACAGUCGCUCUGCGAGCCGGCGCCUCUCUCAGGCGCCUCCGCCUCCCCGUCCCCAGCCCCGCCAGCCUGCAGCCAGCCAGCCCCCGACCAUCCCPCCAGCGCCGCCAGCAAGCAACCCAUAGUCUACCCAUGGAUGAAAAAAAUUCACGUUAGCACGGUGAACCCCAAUUAUAACGGAGGGGAACCCAAGCGCUCGAGGACAGCCUAUACCCGGCAGCAAGUCCUGGAAUUAGAGAAAGAGUUUCAUUACAACCGCUACCUGACCCGAAGGAGAAGGAUCGAGAUCGCCCACUCGCUGUGCCUCUCUGAGAGGCAGAUCAAAAUCUGGUUCCAAAACCGUCGCAUGAAAUGGAAGAAGGACCACCGACUCCCCAACACCAAAGUCAGGUCAGCACCCCCGGCCGGCGCUGCGCCCAGCACCCUUUCGGCAGCUACCCCGGGUACUUCUGAAGACCACUCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGЖCAUUACCAGGUUAUAAAЖCAUAЖCUCACACCCCUGCCCCCACCCCAUGCCCCCACCCUCCCCUCACACACAAAUUGЖCUCUUAUUUAUAGAAUUUAAUAUAUAUAUAUAUAUAUAUAUAUAUAGGUUCUUUUCUCUCUUCCUCUCACCUUGUCCCUUGUCAGUUCCAAACAGACAAAACAGAUAAACAAACAAGCCCCCUGCCCUCCUCUCCCUCCCACUGUUAAGGACCCUUUUAAGCAUGUGAUGUUGUCUUAGCAUGGUACCUGCUGGGUGUUUUUUUUUAAAAGGCCAUUUUGGGGGGUUAUUUAUUUUUUAAGAAAAAAAGCUGCAAAAAUUAUAUAUUGCAAGGUGUGAUGGUCUGGCUUGGGUGAAUUUCAGGGGAAAUGAGGAAAAGAAAAAAGGAAAGAAAUUUUAAAGCCAAUUCUCAUCCUUCUCCUCCUCCPCCUUCCCCCCCUCUUUCCUUAGGCCUUUUGCAUUGAAЖAUGCACCAGGGGAGGUUAGUGAGGGGGAAGUCAUUUUAAGGAGAACAAAGCUAUGAAGUUCUUUUGUAUUAUUGUUGGGGGGGGGUGUGGGAGGAGAGGGGGCGAAGACAGCAGACAAAGCUAAAUGCAUCUGGAGAGCCUCUCAGAGCUGUUCAGUUUGAGGAGCCAAAAGAAAAUCAAAAUGAЖCUUUCAGUUCAGAGAGGCAGUCUAUAGGUAGAAUCUCUCCCCACCCCUAUCGUGGUUAUUGUGUUUUUGGЖCUGAAUUUACUUGAUUAUUGUAAAACUUGCAAUAAAGAAUUUUAGUGUCGAUGUGAAAUGCCCCGUGAUCAAUAAUAAACCAGUGGAUGUGAAUUAGUUUUA
Sequence (SHORT NAMES ENCODING)	Am6ACUUUACAGGGUCGCUAGCUAGUAGGAGGGCUUUAUGGAGCAGAAAAACGACAAAGCGAGAAAAAUUAUUUUCCACUCCAGAAAUUAAUGAUCAUGAGCUCGUAUUUGAUGGm6ACUCUAACUACAUCGAUCCGAAAUUUCCUCCAUGCGAAGAAUAUUCGCAAAAUAGCUACAUCCCUGAACACAGUCCGGAAUAUUACGGCCGGACCAGGGAAUCGGGAUUCCAGCAUCACCACCAGGAGCUGUACCCACCACCGCCUCCGCGCCCUAGCUACCCUGAGCGCCAGUAUAGCUGCACCAGUCUCCAGGGGCCCGGCAAUUCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAUCACAGUCGCUCUGCGAGCCGGCGCCUCUCUCAGGCGCCUCCGCCUCCCCGUCCCCAGCCCCGCCAGCCUGCAGCCAGCCAGCCCCCGACCAUCCCYCCAGCGCCGCCAGCAAGCAACCCAUAGUCUACCCAUGGAUGAAAAAAAUUCACGUUAGCACGGUGAACCCCAAUUAUAACGGAGGGGAACCCAAGCGCUCGAGGACAGCCUAUACCCGGCAGCAAGUCCUGGAAUUAGAGAAAGAGUUUCAUUACAACCGCUACCUGACCCGAAGGAGAAGGAUCGAGAUCGCCCACUCGCUGUGCCUCUCUGAGAGGCAGAUCAAAAUCUGGUUCCAAAACCGUCGCAUGAAAUGGAAGAAGGACCACCGACUCCCCAACACCAAAGUCAGGUCAGCACCCCCGGCCGGCGCUGCGCCCAGCACCCUUUCGGCAGCUACCCCGGGUACUUCUGAAGACCACUCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGm6ACAUUACCAGGUUAUAAAm6ACAUAm6ACUCACACCCCUGCCCCCACCCCAUGCCCCCACCCUCCCCUCACACACAAAUUGm6ACUCUUAUUUAUAGAAUUUAAUAUAUAUAUAUAUAUAUAUAUAUAUAGGUUCUUUUCUCUCUUCCUCUCACCUUGUCCCUUGUCAGUUCCAAACAGACAAAACAGAUAAACAAACAAGCCCCCUGCCCUCCUCUCCCUCCCACUGUUAAGGACCCUUUUAAGCAUGUGAUGUUGUCUUAGCAUGGUACCUGCUGGGUGUUUUUUUUUAAAAGGCCAUUUUGGGGGGUUAUUUAUUUUUUAAGAAAAAAAGCUGCAAAAAUUAUAUAUUGCAAGGUGUGAUGGUCUGGCUUGGGUGAAUUUCAGGGGAAAUGAGGAAAAGAAAAAAGGAAAGAAAUUUUAAAGCCAAUUCUCAUCCUUCUCCUCCUCCYCCUUCCCCCCCUCUUUCCUUAGGCCUUUUGCAUUGAAm6AAUGCACCAGGGGAGGUUAGUGAGGGGGAAGUCAUUUUAAGGAGAACAAAGCUAUGAAGUUCUUUUGUAUUAUUGUUGGGGGGGGGUGUGGGAGGAGAGGGGGCGAAGACAGCAGACAAAGCUAAAUGCAUCUGGAGAGCCUCUCAGAGCUGUUCAGUUUGAGGAGCCAAAAGAAAAUCAAAAUGAm6ACUUUCAGUUCAGAGAGGCAGUCUAUAGGUAGAAUCUCUCCCCACCCCUAUCGUGGUUAUUGUGUUUUUGGm6ACUGAAUUUACUUGAUUAUUGUAAAACUUGCAAUAAAGAAUUUUAGUGUCGAUGUGAAAUGCCCCGUGAUCAAUAAUAAACCAGUGGAUGUGAAUUAGUUUUA
Sequence (MODOMICS CODE ENCODING)	A2000000006ACUUUACAGGGUCGCUAGCUAGUAGGAGGGCUUUAUGGAGCAGAAAAACGACAAAGCGAGAAAAAUUAUUUUCCACUCCAGAAAUUAAUGAUCAUGAGCUCGUAUUUGAUGG2000000006ACUCUAACUACAUCGAUCCGAAAUUUCCUCCAUGCGAAGAAUAUUCGCAAAAUAGCUACAUCCCUGAACACAGUCCGGAAUAUUACGGCCGGACCAGGGAAUCGGGAUUCCAGCAUCACCACCAGGAGCUGUACCCACCACCGCCUCCGCGCCCUAGCUACCCUGAGCGCCAGUAUAGCUGCACCAGUCUCCAGGGGCCCGGCAAUUCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAUCACAGUCGCUCUGCGAGCCGGCGCCUCUCUCAGGCGCCUCCGCCUCCCCGUCCCCAGCCCCGCCAGCCUGCAGCCAGCCAGCCCCCGACCAUCCC2000000009UCCAGCGCCGCCAGCAAGCAACCCAUAGUCUACCCAUGGAUGAAAAAAAUUCACGUUAGCACGGUGAACCCCAAUUAUAACGGAGGGGAACCCAAGCGCUCGAGGACAGCCUAUACCCGGCAGCAAGUCCUGGAAUUAGAGAAAGAGUUUCAUUACAACCGCUACCUGACCCGAAGGAGAAGGAUCGAGAUCGCCCACUCGCUGUGCCUCUCUGAGAGGCAGAUCAAAAUCUGGUUCCAAAACCGUCGCAUGAAAUGGAAGAAGGACCACCGACUCCCCAACACCAAAGUCAGGUCAGCACCCCCGGCCGGCGCUGCGCCCAGCACCCUUUCGGCAGCUACCCCGGGUACUUCUGAAGACCACUCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGG2000000006ACAUUACCAGGUUAUAAA2000000006ACAUA2000000006ACUCACACCCCUGCCCCCACCCCAUGCCCCCACCCUCCCCUCACACACAAAUUG2000000006ACUCUUAUUUAUAGAAUUUAAUAUAUAUAUAUAUAUAUAUAUAUAUAGGUUCUUUUCUCUCUUCCUCUCACCUUGUCCCUUGUCAGUUCCAAACAGACAAAACAGAUAAACAAACAAGCCCCCUGCCCUCCUCUCCCUCCCACUGUUAAGGACCCUUUUAAGCAUGUGAUGUUGUCUUAGCAUGGUACCUGCUGGGUGUUUUUUUUUAAAAGGCCAUUUUGGGGGGUUAUUUAUUUUUUAAGAAAAAAAGCUGCAAAAAUUAUAUAUUGCAAGGUGUGAUGGUCUGGCUUGGGUGAAUUUCAGGGGAAAUGAGGAAAAGAAAAAAGGAAAGAAAUUUUAAAGCCAAUUCUCAUCCUUCUCCUCCUCC2000000009UCCUUCCCCCCCUCUUUCCUUAGGCCUUUUGCAUUGAA2000000006AAUGCACCAGGGGAGGUUAGUGAGGGGGAAGUCAUUUUAAGGAGAACAAAGCUAUGAAGUUCUUUUGUAUUAUUGUUGGGGGGGGGUGUGGGAGGAGAGGGGGCGAAGACAGCAGACAAAGCUAAAUGCAUCUGGAGAGCCUCUCAGAGCUGUUCAGUUUGAGGAGCCAAAAGAAAAUCAAAAUGA2000000006ACUUUCAGUUCAGAGAGGCAGUCUAUAGGUAGAAUCUCUCCCCACCCCUAUCGUGGUUAUUGUGUUUUUGG2000000006ACUGAAUUUACUUGAUUAUUGUAAAACUUGCAAUAAAGAAUUUUAGUGUCGAUGUGAAAUGCCCCGUGAUCAAUAAUAAACCAGUGGAUGUGAAUUAGUUUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	2	114	464	867	885	890	944	1311	1349	1535	1606
Modification Positions	m6A	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A
Genomic Coordinates	12:54053836:+	12:54053948:+	12:54054298:+	12:54055189:+	12:54055207:+	12:54055212:+	12:54055266:+	12:54055633:+	12:54055671:+	12:54055857:+	12:54055928:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dA7YoLwHrzgR ksEP666umrV9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm NjZ8bGGJsNSR QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8