General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000303450
Gene ID:	ENSG00000180806
Gene Name:	HOXC9
Sequence (UNICHARACTER ENCODING)	AAUCUUAUGUAUGUAAAACCCCGUUACGAUGUCGGCGACGGGGCCCAUCAGUAACUAUUACGUGGЖCUCGCUCAUCUCUCACGACAAUGAAGACCUCCUAGCGUCCAGGUUUCCGGCCACCGGGGCUCAUCCCGCCGCCGCCAGACCCAGCGGUUUGGUGCCGGЖCUGUAGCGAUUUUCCGUCCUGUAGCUUCGCGCCCAAGCCGGCAGUGUUCAGCACGUCGUGGGCGCCCGUGCCCUCUCAGUCGUCCGUGGUAUAUCACCCGUACGGCCCCCAGCCCCACCUCGGCGCCGACACGCGCUACAUGCGGЖCUUGGCUCGAGCCGCUGUCCGGCGCCGUCUCCUUCCCCAGCUUCCCGGCCGGGGGCCGUCACUACGCCCUCAAGCCGGACGCCUACCCCGGGCGCCGCGCGGACUGCGGCCCAGGGGAGGGCCGCAGCUACCCGGЖCUACAUGUACGGCUCGCCCGGGGAGCUGCGCGACCGCGCCCCGCAGACACUGCCCUCGCCCGAGGCGGACGCGCUCGCCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCUGGACCCCAGCAACCCCGUGGCCAACUGGAUUCACGCCCGCUCCACGAGGAAGAAGCGCUGCCCCUACACCAAGUACCAGACGCUGGAACUGGAGAAGGAGUUUCUCUUCAAUAUGUAUUUAACCAGGGЖCCGUCGGUAUGAGGUGGCCCGGGUUCUCAAUCUCACCGAGCGGCAGGUCAAAAUCUGGUUUCAGAAUCGAAGGAUGAAGAUGAAAAAGAUGAAUAAAGAGAAAACCGACAAGGAGCAGUCCUAAACCCUACCCAGCCUGCUGCCUCAGCACAGCCAAGGGAAAAACAAAAACCCCACAAAAUACCCCAACACAGGCGGGGGAGAGACGAAAAAGAAAAGGAAAGAGCAAGAUAGACAAAAGCCAAUCAGCUUAAAAAGAAAAACAAGGAAGGGGAAAAGAAAЖCUCUUGCGAUUUGGGAGGGUUCAGUGUUGAGAUAUUGGUGUUUUAGAGUUAGUUCUACCCAGCGAGGAGGAGGCGGGGAGAGAAACUGCGUUCUCUUUCCCCAGCGCAACCGAAAUAAAUGACACAUACAAAUGUGAUUUUUUUCCUCCUUUCUUCAGAGAAGCCAGUACUUGAAUCGCUAUAUUUCUAUUUUUUUUUCCCUGUAUCGUAUUUGGUCCAGGUCAUCCCUCCCCGGGCCUGGGGCGCUCUGCGUGCAGAUUUUGUACAAAAAAAAAAAAGACACACACACAUACAUGAUAAUGAUUCCCAGCCCAGGAGCUGAGGGGUGAGGGCUGGGGACCAUGCCGCGGGCUAGGUCGGGCCCGUGCAGGCCGGCGCCUUGGGCUGUACAUAGUGUUCCCUCUCAPCCCCAGGGUUCGUCCCCAGCGUCCGUCCUGUAACGUGCUUCUGUUUGUUAUGGUAGAЖCAGCCCUGUGUUAAUAUAUUGAAGUCACUUAACCAGAAA
Sequence (SHORT NAMES ENCODING)	AAUCUUAUGUAUGUAAAACCCCGUUACGAUGUCGGCGACGGGGCCCAUCAGUAACUAUUACGUGGm6ACUCGCUCAUCUCUCACGACAAUGAAGACCUCCUAGCGUCCAGGUUUCCGGCCACCGGGGCUCAUCCCGCCGCCGCCAGACCCAGCGGUUUGGUGCCGGm6ACUGUAGCGAUUUUCCGUCCUGUAGCUUCGCGCCCAAGCCGGCAGUGUUCAGCACGUCGUGGGCGCCCGUGCCCUCUCAGUCGUCCGUGGUAUAUCACCCGUACGGCCCCCAGCCCCACCUCGGCGCCGACACGCGCUACAUGCGGm6ACUUGGCUCGAGCCGCUGUCCGGCGCCGUCUCCUUCCCCAGCUUCCCGGCCGGGGGCCGUCACUACGCCCUCAAGCCGGACGCCUACCCCGGGCGCCGCGCGGACUGCGGCCCAGGGGAGGGCCGCAGCUACCCGGm6ACUACAUGUACGGCUCGCCCGGGGAGCUGCGCGACCGCGCCCCGCAGACACUGCCCUCGCCCGAGGCGGACGCGCUCGCCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCUGGACCCCAGCAACCCCGUGGCCAACUGGAUUCACGCCCGCUCCACGAGGAAGAAGCGCUGCCCCUACACCAAGUACCAGACGCUGGAACUGGAGAAGGAGUUUCUCUUCAAUAUGUAUUUAACCAGGGm6ACCGUCGGUAUGAGGUGGCCCGGGUUCUCAAUCUCACCGAGCGGCAGGUCAAAAUCUGGUUUCAGAAUCGAAGGAUGAAGAUGAAAAAGAUGAAUAAAGAGAAAACCGACAAGGAGCAGUCCUAAACCCUACCCAGCCUGCUGCCUCAGCACAGCCAAGGGAAAAACAAAAACCCCACAAAAUACCCCAACACAGGCGGGGGAGAGACGAAAAAGAAAAGGAAAGAGCAAGAUAGACAAAAGCCAAUCAGCUUAAAAAGAAAAACAAGGAAGGGGAAAAGAAAm6ACUCUUGCGAUUUGGGAGGGUUCAGUGUUGAGAUAUUGGUGUUUUAGAGUUAGUUCUACCCAGCGAGGAGGAGGCGGGGAGAGAAACUGCGUUCUCUUUCCCCAGCGCAACCGAAAUAAAUGACACAUACAAAUGUGAUUUUUUUCCUCCUUUCUUCAGAGAAGCCAGUACUUGAAUCGCUAUAUUUCUAUUUUUUUUUCCCUGUAUCGUAUUUGGUCCAGGUCAUCCCUCCCCGGGCCUGGGGCGCUCUGCGUGCAGAUUUUGUACAAAAAAAAAAAAGACACACACACAUACAUGAUAAUGAUUCCCAGCCCAGGAGCUGAGGGGUGAGGGCUGGGGACCAUGCCGCGGGCUAGGUCGGGCCCGUGCAGGCCGGCGCCUUGGGCUGUACAUAGUGUUCCCUCUCAYCCCCAGGGUUCGUCCCCAGCGUCCGUCCUGUAACGUGCUUCUGUUUGUUAUGGUAGAm6ACAGCCCUGUGUUAAUAUAUUGAAGUCACUUAACCAGAAA
Sequence (MODOMICS CODE ENCODING)	AAUCUUAUGUAUGUAAAACCCCGUUACGAUGUCGGCGACGGGGCCCAUCAGUAACUAUUACGUGG2000000006ACUCGCUCAUCUCUCACGACAAUGAAGACCUCCUAGCGUCCAGGUUUCCGGCCACCGGGGCUCAUCCCGCCGCCGCCAGACCCAGCGGUUUGGUGCCGG2000000006ACUGUAGCGAUUUUCCGUCCUGUAGCUUCGCGCCCAAGCCGGCAGUGUUCAGCACGUCGUGGGCGCCCGUGCCCUCUCAGUCGUCCGUGGUAUAUCACCCGUACGGCCCCCAGCCCCACCUCGGCGCCGACACGCGCUACAUGCGG2000000006ACUUGGCUCGAGCCGCUGUCCGGCGCCGUCUCCUUCCCCAGCUUCCCGGCCGGGGGCCGUCACUACGCCCUCAAGCCGGACGCCUACCCCGGGCGCCGCGCGGACUGCGGCCCAGGGGAGGGCCGCAGCUACCCGG2000000006ACUACAUGUACGGCUCGCCCGGGGAGCUGCGCGACCGCGCCCCGCAGACACUGCCCUCGCCCGAGGCGGACGCGCUCGCCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCUGGACCCCAGCAACCCCGUGGCCAACUGGAUUCACGCCCGCUCCACGAGGAAGAAGCGCUGCCCCUACACCAAGUACCAGACGCUGGAACUGGAGAAGGAGUUUCUCUUCAAUAUGUAUUUAACCAGGG2000000006ACCGUCGGUAUGAGGUGGCCCGGGUUCUCAAUCUCACCGAGCGGCAGGUCAAAAUCUGGUUUCAGAAUCGAAGGAUGAAGAUGAAAAAGAUGAAUAAAGAGAAAACCGACAAGGAGCAGUCCUAAACCCUACCCAGCCUGCUGCCUCAGCACAGCCAAGGGAAAAACAAAAACCCCACAAAAUACCCCAACACAGGCGGGGGAGAGACGAAAAAGAAAAGGAAAGAGCAAGAUAGACAAAAGCCAAUCAGCUUAAAAAGAAAAACAAGGAAGGGGAAAAGAAA2000000006ACUCUUGCGAUUUGGGAGGGUUCAGUGUUGAGAUAUUGGUGUUUUAGAGUUAGUUCUACCCAGCGAGGAGGAGGCGGGGAGAGAAACUGCGUUCUCUUUCCCCAGCGCAACCGAAAUAAAUGACACAUACAAAUGUGAUUUUUUUCCUCCUUUCUUCAGAGAAGCCAGUACUUGAAUCGCUAUAUUUCUAUUUUUUUUUCCCUGUAUCGUAUUUGGUCCAGGUCAUCCCUCCCCGGGCCUGGGGCGCUCUGCGUGCAGAUUUUGUACAAAAAAAAAAAAGACACACACACAUACAUGAUAAUGAUUCCCAGCCCAGGAGCUGAGGGGUGAGGGCUGGGGACCAUGCCGCGGGCUAGGUCGGGCCCGUGCAGGCCGGCGCCUUGGGCUGUACAUAGUGUUCCCUCUCA2000000009UCCCCAGGGUUCGUCCCCAGCGUCCGUCCUGUAACGUGCUUCUGUUUGUUAUGGUAGA2000000006ACAGCCCUGUGUUAAUAUAUUGAAGUCACUUAACCAGAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	66	165	311	447	687	970	1377	1435
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	12:54000226:+	12:54000325:+	12:54000471:+	12:54000607:+	12:54002550:+	12:54002833:+	12:54003240:+	12:54003298:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	JkWoGWVwjNda Yfn77uLS5tv8	JkWoGWVwjNda Yfn77uLS5tv8