General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000501271
Gene ID:	ENSG00000130779
Gene Name:	CLIP1
Sequence (UNICHARACTER ENCODING)	ACAUGUUUACUUAUUGCUCCACCAUUAUCAGUCAGUUGAUAAAUGAGAGUCUGAAGGAAAUUUCCAUGUGACUUUUUCAAAUCUGCCGAACAGAAAAGUCCUGGAUGGAUUGUAGAGUUUAAUGGAAGAACUAACCUUUUUAUGCAUUUUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGCGUGUGUGUGUGUGUGUAUUUUUUUCUUUUUUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGACUGCAGUGGCGUAGUCAUGGCUCACUGCAACGUCCGCCUCCUGGGUUCAAGCGAGUUUCCAGCCUCAGCCUCCUGAGUAGCUGGGACUACAGGCGUAAGCCACCACACCCAGCUAAUUUUUGUAUUUUUACUAGAGACAGGGUAUCACUAUGUUGGCCAGGUUGGUCUUGAACUCCUGACCUCAGAUGAUCCGCCUGCCUCUGUCUCCCAAAGUGUUGGGAUUACAGGCGUGAGCCACCACGCCUGGCCAAUAUUUUUUAUGUGGUAGAAUGAAAACAAACUUGUGCCCAUAUAUUCAGAAAUAUAAGAUUAUGACUUCUGGAGAAUGCAAGAUUUUUUUCUCCUAUUUAAAAAAAUGUUUCUUAUAUUUUUUCAUGAAUCAAUAGCACUCCACCAACCCACAGAUUUAGAUGUUUAGGAAUAAUUUCAGCUGGGUACAGUGGCUCAUGCCUGUAAUCCCAACACUUUGGGAGGCCGAGGCAGGCGGAUCACGAGGUCAGGAGUUUGAGUCCAUCCUGGACAAUAUGAUGAAACCCCGUCUCUAUUAAAAAUACAAAAAUUAGCUGGGUUUGGUGGCACGUGCCUAUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCACUUGAACCCGGGAGGCAGAGGUCGCAGUGAGCCGAGAUCGAGCCACUGCACUCCAGCCUGGGCAACAGAGCAAGACUCCAUCUCAUAAAUAAAUAAAAUAAUUAAUUAAUUCAUGGCCUGGCACCGUGGCUCACACAUGUAUUCCCAGCACUUUGGGAGGCCAAGCCGGGUGGAUCACCUGAGGUCAGGAGUUUGAGACCAUCCUGGCCAACAUGGCAAAACCCCGUCUCUACUAAAAAUACAAAAAUCAGCCAGGCAUGGUGGUGCAUGCCUGUAAUCCCAGCUAUUCAGGAGGCUGAGACAGUAGAAUUGCUUGAACCCAGGAGACAGAGGCUGCAGUGAGCCGAGAUCCUGCCACUGCACUCCAGCCUGGGCGACAGAGCGAGACUCCGUCUCAAAAAAAAAAAAAAAACAAAACAAAACAAAUGAAGUUUACCCAUGUUAUACCUAGAAACAUUCAAUGAAGUGUAAUUUAAAUUUUUUUUUAAAAUAUAAAAUAGCAUCUCCUCAGUAAUGAACAUUUGAAGAAAUCUGAAAGGUGUGAGGGGGUAAAAGAAACUGCCAUAGCCUUACCACCUAGACAUGGCCUCAUUUAAGUUCAGCUCUUUACUCACACAAUCUCAGCAUGCCUGUCCUCCGGGAGAGUGAAAAGCAUGGGUUCCUAAUAGCCGCUGUUGGCCCCUUCUGCACACUUUGCCGCCAGAGCUUAAAGGUAUAAACUUCAUGACUUCUUGAUGCUCCAGCUUAUAUAUAUUCUUGACAUUUUACACAUUUUUUUUUUAACAAAUCAGAUUGAUUUCCUAAAUUCAGUAAUAGUGGACCUUCAAAGGAAGAAUCAAGACCUCAAGAUGAAGGUGGAGAUGAUGUCAGAAGCAGCCCUGAAUGGGAACGGGGAUGACCUAAACAAUUAUGACAGUGAUGAUCAGGAGAAACAGUCCAAGAAGAAACCUCGCCUCUUCUGUGACAUUUGUGACUGCUUUGAUCUCCACGACACAGAGGAUUGUCCUACCCAGGCACAGAUGUCAGAGGACCCUCCCCAUUCCACACACCAUGGCAGUCGGGGUGAGGAACGCCCAUACUGUGAAAUCUGUGAGAUGUUUGGЖCACUGGGCCACCAACUGCAAUGACGACGAAACCUUCUGAUGAAGCCUCCAGUGGAGAACUGGGCUUGCUCAGACGCACUCGCAUUGACACAACGUAЖCACCAGCAUUGUGUGUGCAGACUUCAGGAGAЖCUCAUGUUAUUUUUUAACCCCGUCAACAAAUCUAGGAAAAUAUUUUGAUCUUCAACAAAUUGCCCUPUAGUCUCCCCGUAUGAGUUAGAAUAAUAAAUAUUUAGUAGGUGAGUUUUCACCUCGAAUUUUGUUUUCUUGAUUUUUACGUUUGAAGЖCAUUGCACCAGAUGCCAUUACAUUUAUUGGCCCCCCGACCUUGUAGAAAAACCCCUACCCUCACAAUACCUUAUUUAAGUAЖCUPUAAAUUAUGCCGUUACUUUUCAUAUUUGCACUAAGAUAUUUCCAGGCUGCAUUUGUAUAUUUAGAUUUUUUGGUUAAGCUUUGA
Sequence (SHORT NAMES ENCODING)	ACAUGUUUACUUAUUGCUCCACCAUUAUCAGUCAGUUGAUAAAUGAGAGUCUGAAGGAAAUUUCCAUGUGACUUUUUCAAAUCUGCCGAACAGAAAAGUCCUGGAUGGAUUGUAGAGUUUAAUGGAAGAACUAACCUUUUUAUGCAUUUUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGCGUGUGUGUGUGUGUGUAUUUUUUUCUUUUUUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGACUGCAGUGGCGUAGUCAUGGCUCACUGCAACGUCCGCCUCCUGGGUUCAAGCGAGUUUCCAGCCUCAGCCUCCUGAGUAGCUGGGACUACAGGCGUAAGCCACCACACCCAGCUAAUUUUUGUAUUUUUACUAGAGACAGGGUAUCACUAUGUUGGCCAGGUUGGUCUUGAACUCCUGACCUCAGAUGAUCCGCCUGCCUCUGUCUCCCAAAGUGUUGGGAUUACAGGCGUGAGCCACCACGCCUGGCCAAUAUUUUUUAUGUGGUAGAAUGAAAACAAACUUGUGCCCAUAUAUUCAGAAAUAUAAGAUUAUGACUUCUGGAGAAUGCAAGAUUUUUUUCUCCUAUUUAAAAAAAUGUUUCUUAUAUUUUUUCAUGAAUCAAUAGCACUCCACCAACCCACAGAUUUAGAUGUUUAGGAAUAAUUUCAGCUGGGUACAGUGGCUCAUGCCUGUAAUCCCAACACUUUGGGAGGCCGAGGCAGGCGGAUCACGAGGUCAGGAGUUUGAGUCCAUCCUGGACAAUAUGAUGAAACCCCGUCUCUAUUAAAAAUACAAAAAUUAGCUGGGUUUGGUGGCACGUGCCUAUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCACUUGAACCCGGGAGGCAGAGGUCGCAGUGAGCCGAGAUCGAGCCACUGCACUCCAGCCUGGGCAACAGAGCAAGACUCCAUCUCAUAAAUAAAUAAAAUAAUUAAUUAAUUCAUGGCCUGGCACCGUGGCUCACACAUGUAUUCCCAGCACUUUGGGAGGCCAAGCCGGGUGGAUCACCUGAGGUCAGGAGUUUGAGACCAUCCUGGCCAACAUGGCAAAACCCCGUCUCUACUAAAAAUACAAAAAUCAGCCAGGCAUGGUGGUGCAUGCCUGUAAUCCCAGCUAUUCAGGAGGCUGAGACAGUAGAAUUGCUUGAACCCAGGAGACAGAGGCUGCAGUGAGCCGAGAUCCUGCCACUGCACUCCAGCCUGGGCGACAGAGCGAGACUCCGUCUCAAAAAAAAAAAAAAAACAAAACAAAACAAAUGAAGUUUACCCAUGUUAUACCUAGAAACAUUCAAUGAAGUGUAAUUUAAAUUUUUUUUUAAAAUAUAAAAUAGCAUCUCCUCAGUAAUGAACAUUUGAAGAAAUCUGAAAGGUGUGAGGGGGUAAAAGAAACUGCCAUAGCCUUACCACCUAGACAUGGCCUCAUUUAAGUUCAGCUCUUUACUCACACAAUCUCAGCAUGCCUGUCCUCCGGGAGAGUGAAAAGCAUGGGUUCCUAAUAGCCGCUGUUGGCCCCUUCUGCACACUUUGCCGCCAGAGCUUAAAGGUAUAAACUUCAUGACUUCUUGAUGCUCCAGCUUAUAUAUAUUCUUGACAUUUUACACAUUUUUUUUUUAACAAAUCAGAUUGAUUUCCUAAAUUCAGUAAUAGUGGACCUUCAAAGGAAGAAUCAAGACCUCAAGAUGAAGGUGGAGAUGAUGUCAGAAGCAGCCCUGAAUGGGAACGGGGAUGACCUAAACAAUUAUGACAGUGAUGAUCAGGAGAAACAGUCCAAGAAGAAACCUCGCCUCUUCUGUGACAUUUGUGACUGCUUUGAUCUCCACGACACAGAGGAUUGUCCUACCCAGGCACAGAUGUCAGAGGACCCUCCCCAUUCCACACACCAUGGCAGUCGGGGUGAGGAACGCCCAUACUGUGAAAUCUGUGAGAUGUUUGGm6ACACUGGGCCACCAACUGCAAUGACGACGAAACCUUCUGAUGAAGCCUCCAGUGGAGAACUGGGCUUGCUCAGACGCACUCGCAUUGACACAACGUAm6ACACCAGCAUUGUGUGUGCAGACUUCAGGAGAm6ACUCAUGUUAUUUUUUAACCCCGUCAACAAAUCUAGGAAAAUAUUUUGAUCUUCAACAAAUUGCCCUYUAGUCUCCCCGUAUGAGUUAGAAUAAUAAAUAUUUAGUAGGUGAGUUUUCACCUCGAAUUUUGUUUUCUUGAUUUUUACGUUUGAAGm6ACAUUGCACCAGAUGCCAUUACAUUUAUUGGCCCCCCGACCUUGUAGAAAAACCCCUACCCUCACAAUACCUUAUUUAAGUAm6ACUYUAAAUUAUGCCGUUACUUUUCAUAUUUGCACUAAGAUAUUUCCAGGCUGCAUUUGUAUAUUUAGAUUUUUUGGUUAAGCUUUGA
Sequence (MODOMICS CODE ENCODING)	ACAUGUUUACUUAUUGCUCCACCAUUAUCAGUCAGUUGAUAAAUGAGAGUCUGAAGGAAAUUUCCAUGUGACUUUUUCAAAUCUGCCGAACAGAAAAGUCCUGGAUGGAUUGUAGAGUUUAAUGGAAGAACUAACCUUUUUAUGCAUUUUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCGCGUGUGUGUGUGUGUGUAUUUUUUUCUUUUUUGAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGACUGCAGUGGCGUAGUCAUGGCUCACUGCAACGUCCGCCUCCUGGGUUCAAGCGAGUUUCCAGCCUCAGCCUCCUGAGUAGCUGGGACUACAGGCGUAAGCCACCACACCCAGCUAAUUUUUGUAUUUUUACUAGAGACAGGGUAUCACUAUGUUGGCCAGGUUGGUCUUGAACUCCUGACCUCAGAUGAUCCGCCUGCCUCUGUCUCCCAAAGUGUUGGGAUUACAGGCGUGAGCCACCACGCCUGGCCAAUAUUUUUUAUGUGGUAGAAUGAAAACAAACUUGUGCCCAUAUAUUCAGAAAUAUAAGAUUAUGACUUCUGGAGAAUGCAAGAUUUUUUUCUCCUAUUUAAAAAAAUGUUUCUUAUAUUUUUUCAUGAAUCAAUAGCACUCCACCAACCCACAGAUUUAGAUGUUUAGGAAUAAUUUCAGCUGGGUACAGUGGCUCAUGCCUGUAAUCCCAACACUUUGGGAGGCCGAGGCAGGCGGAUCACGAGGUCAGGAGUUUGAGUCCAUCCUGGACAAUAUGAUGAAACCCCGUCUCUAUUAAAAAUACAAAAAUUAGCUGGGUUUGGUGGCACGUGCCUAUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCACUUGAACCCGGGAGGCAGAGGUCGCAGUGAGCCGAGAUCGAGCCACUGCACUCCAGCCUGGGCAACAGAGCAAGACUCCAUCUCAUAAAUAAAUAAAAUAAUUAAUUAAUUCAUGGCCUGGCACCGUGGCUCACACAUGUAUUCCCAGCACUUUGGGAGGCCAAGCCGGGUGGAUCACCUGAGGUCAGGAGUUUGAGACCAUCCUGGCCAACAUGGCAAAACCCCGUCUCUACUAAAAAUACAAAAAUCAGCCAGGCAUGGUGGUGCAUGCCUGUAAUCCCAGCUAUUCAGGAGGCUGAGACAGUAGAAUUGCUUGAACCCAGGAGACAGAGGCUGCAGUGAGCCGAGAUCCUGCCACUGCACUCCAGCCUGGGCGACAGAGCGAGACUCCGUCUCAAAAAAAAAAAAAAAACAAAACAAAACAAAUGAAGUUUACCCAUGUUAUACCUAGAAACAUUCAAUGAAGUGUAAUUUAAAUUUUUUUUUAAAAUAUAAAAUAGCAUCUCCUCAGUAAUGAACAUUUGAAGAAAUCUGAAAGGUGUGAGGGGGUAAAAGAAACUGCCAUAGCCUUACCACCUAGACAUGGCCUCAUUUAAGUUCAGCUCUUUACUCACACAAUCUCAGCAUGCCUGUCCUCCGGGAGAGUGAAAAGCAUGGGUUCCUAAUAGCCGCUGUUGGCCCCUUCUGCACACUUUGCCGCCAGAGCUUAAAGGUAUAAACUUCAUGACUUCUUGAUGCUCCAGCUUAUAUAUAUUCUUGACAUUUUACACAUUUUUUUUUUAACAAAUCAGAUUGAUUUCCUAAAUUCAGUAAUAGUGGACCUUCAAAGGAAGAAUCAAGACCUCAAGAUGAAGGUGGAGAUGAUGUCAGAAGCAGCCCUGAAUGGGAACGGGGAUGACCUAAACAAUUAUGACAGUGAUGAUCAGGAGAAACAGUCCAAGAAGAAACCUCGCCUCUUCUGUGACAUUUGUGACUGCUUUGAUCUCCACGACACAGAGGAUUGUCCUACCCAGGCACAGAUGUCAGAGGACCCUCCCCAUUCCACACACCAUGGCAGUCGGGGUGAGGAACGCCCAUACUGUGAAAUCUGUGAGAUGUUUGG2000000006ACACUGGGCCACCAACUGCAAUGACGACGAAACCUUCUGAUGAAGCCUCCAGUGGAGAACUGGGCUUGCUCAGACGCACUCGCAUUGACACAACGUA2000000006ACACCAGCAUUGUGUGUGCAGACUUCAGGAGA2000000006ACUCAUGUUAUUUUUUAACCCCGUCAACAAAUCUAGGAAAAUAUUUUGAUCUUCAACAAAUUGCCCU2000000009UUAGUCUCCCCGUAUGAGUUAGAAUAAUAAAUAUUUAGUAGGUGAGUUUUCACCUCGAAUUUUGUUUUCUUGAUUUUUACGUUUGAAG2000000006ACAUUGCACCAGAUGCCAUUACAUUUAUUGGCCCCCCGACCUUGUAGAAAAACCCCUACCCUCACAAUACCUUAUUUAAGUA2000000006ACU2000000009UUAAAUUAUGCCGUUACUUUUCAUAUUUGCACUAAGAUAUUUCCAGGCUGCAUUUGUAUAUUUAGAUUUUUUGGUUAAGCUUUGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1973	2070	2102	2169	2257	2339	2342
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	Y
Genomic Coordinates	12:122272914:-	12:122272817:-	12:122272785:-	12:122272718:-	12:122272630:-	12:122272548:-	12:122272545:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	6UuHp6YApVKv VL7zkHvkfkoB WdHxkJGRmFxn ArijeGVTwYBw WiQcrNTGZHPT Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP