General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000303406
Gene ID:	ENSG00000198353
Gene Name:	HOXC4
Sequence (UNICHARACTER ENCODING)	ACCUGCCCUGGGCGCUCCCUUCAUUAGCAGUAUUUUUUUUAAAUUAAUCUGAUUAAUAAUUAUUUUUCCCCCAUUUAAUUUUUUUUCCUCCCAGGUGGAGUUGCCGAAGCUGGGGGCAGCUGGGGAGGGUGGGGAUGGGAGGGGAGAGACAGAAGUUGAGGGCAUCUCUCUCUUCCUUCCCGACCCUCUGGCCCCCAAGGGGCAGGAGGAAUGCAGGAGCAGGAGUUGAGCUUGGGAGCUGCAGAUGCCUCCGCCCCUCCUCUCUCCCAGGCUCUUCCUCCUGCCCCCUUCUUGCAACUCUCCUUAAUUUUGUUUGGCUUUUGGAUGAUUAUAAUUAUUUUUAUUUUUGAAUUUAUAUAAAGUAUAUGUGUGUGUGUGUGGAGCUGAGACAGGCUCGGCAGCGGCACAGAAUGAGGGAAGACGAGAAAGAGAGUGGGAGAGAGAGAGGCAGAGAGGGAGAGAGGGAGAGUGACAGCAGCGCUCGCGGGGGCUCAACCCCCAGACCUCCAGAAAUGACGUCAGAAUCAUUUGCAUCCCGCUGCCUCUACCUGCCUGGUCCAGCUGGGACCCUGCCUCGCCGGCCGCAUGGCCAGAGGGUUGGAAAUUAAUGAUCAUGAGCUCGUAUUUGAUGGЖCUCUAACUACAUCGAUCCGAAAUUUCCUCCAUGCGAAGAAUAUUCGCAAAAUAGCUACAUCCCUGAACACAGUCCGGAAUAUUACGGCCGGACCAGGGAAUCGGGAUUCCAGCAUCACCACCAGGAGCUGUACCCACCACCGCCUCCGCGCCCUAGCUACCCUGAGCGCCAGUAUAGCUGCACCAGUCUCCAGGGGCCCGGCAAUUCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAUCACAGUCGCUCUGCGAGCCGGCGCCUCUCUCAGGCGCCUCCGCCUCCCCGUCCCCAGCCCCGCCAGCCUGCAGCCAGCCAGCCCCCGACCAUCCCPCCAGCGCCGCCAGCAAGCAACCCAUAGUCUACCCAUGGAUGAAAAAAAUUCACGUUAGCACGGUGAACCCCAAUUAUAACGGAGGGGAACCCAAGCGCUCGAGGACAGCCUAUACCCGGCAGCAAGUCCUGGAAUUAGAGAAAGAGUUUCAUUACAACCGCUACCUGACCCGAAGGAGAAGGAUCGAGAUCGCCCACUCGCUGUGCCUCUCUGAGAGGCAGAUCAAAAUCUGGUUCCAAAACCGUCGCAUGAAAUGGAAGAAGGACCACCGACUCCCCAACACCAAAGUCAGGUCAGCACCCCCGGCCGGCGCUGCGCCCAGCACCCUUUCGGCAGCUACCCCGGGUACUUCUGAAGACCACUCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGЖCAUUACCAGGUUAUAAAЖCAUAЖCUCACACCCCUGCCCCCACCCCAUGCCCCCACCCUCCCCUCACACACAAAUUGЖCUCUUAUUUAUAGAAUUUAAUAUAUAUAUAUAUAUAUAUAUAUAUAGGUUCUUUUCUCUCU
Sequence (SHORT NAMES ENCODING)	ACCUGCCCUGGGCGCUCCCUUCAUUAGCAGUAUUUUUUUUAAAUUAAUCUGAUUAAUAAUUAUUUUUCCCCCAUUUAAUUUUUUUUCCUCCCAGGUGGAGUUGCCGAAGCUGGGGGCAGCUGGGGAGGGUGGGGAUGGGAGGGGAGAGACAGAAGUUGAGGGCAUCUCUCUCUUCCUUCCCGACCCUCUGGCCCCCAAGGGGCAGGAGGAAUGCAGGAGCAGGAGUUGAGCUUGGGAGCUGCAGAUGCCUCCGCCCCUCCUCUCUCCCAGGCUCUUCCUCCUGCCCCCUUCUUGCAACUCUCCUUAAUUUUGUUUGGCUUUUGGAUGAUUAUAAUUAUUUUUAUUUUUGAAUUUAUAUAAAGUAUAUGUGUGUGUGUGUGGAGCUGAGACAGGCUCGGCAGCGGCACAGAAUGAGGGAAGACGAGAAAGAGAGUGGGAGAGAGAGAGGCAGAGAGGGAGAGAGGGAGAGUGACAGCAGCGCUCGCGGGGGCUCAACCCCCAGACCUCCAGAAAUGACGUCAGAAUCAUUUGCAUCCCGCUGCCUCUACCUGCCUGGUCCAGCUGGGACCCUGCCUCGCCGGCCGCAUGGCCAGAGGGUUGGAAAUUAAUGAUCAUGAGCUCGUAUUUGAUGGm6ACUCUAACUACAUCGAUCCGAAAUUUCCUCCAUGCGAAGAAUAUUCGCAAAAUAGCUACAUCCCUGAACACAGUCCGGAAUAUUACGGCCGGACCAGGGAAUCGGGAUUCCAGCAUCACCACCAGGAGCUGUACCCACCACCGCCUCCGCGCCCUAGCUACCCUGAGCGCCAGUAUAGCUGCACCAGUCUCCAGGGGCCCGGCAAUUCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAUCACAGUCGCUCUGCGAGCCGGCGCCUCUCUCAGGCGCCUCCGCCUCCCCGUCCCCAGCCCCGCCAGCCUGCAGCCAGCCAGCCCCCGACCAUCCCYCCAGCGCCGCCAGCAAGCAACCCAUAGUCUACCCAUGGAUGAAAAAAAUUCACGUUAGCACGGUGAACCCCAAUUAUAACGGAGGGGAACCCAAGCGCUCGAGGACAGCCUAUACCCGGCAGCAAGUCCUGGAAUUAGAGAAAGAGUUUCAUUACAACCGCUACCUGACCCGAAGGAGAAGGAUCGAGAUCGCCCACUCGCUGUGCCUCUCUGAGAGGCAGAUCAAAAUCUGGUUCCAAAACCGUCGCAUGAAAUGGAAGAAGGACCACCGACUCCCCAACACCAAAGUCAGGUCAGCACCCCCGGCCGGCGCUGCGCCCAGCACCCUUUCGGCAGCUACCCCGGGUACUUCUGAAGACCACUCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGGm6ACAUUACCAGGUUAUAAAm6ACAUAm6ACUCACACCCCUGCCCCCACCCCAUGCCCCCACCCUCCCCUCACACACAAAUUGm6ACUCUUAUUUAUAGAAUUUAAUAUAUAUAUAUAUAUAUAUAUAUAUAGGUUCUUUUCUCUCU
Sequence (MODOMICS CODE ENCODING)	ACCUGCCCUGGGCGCUCCCUUCAUUAGCAGUAUUUUUUUUAAAUUAAUCUGAUUAAUAAUUAUUUUUCCCCCAUUUAAUUUUUUUUCCUCCCAGGUGGAGUUGCCGAAGCUGGGGGCAGCUGGGGAGGGUGGGGAUGGGAGGGGAGAGACAGAAGUUGAGGGCAUCUCUCUCUUCCUUCCCGACCCUCUGGCCCCCAAGGGGCAGGAGGAAUGCAGGAGCAGGAGUUGAGCUUGGGAGCUGCAGAUGCCUCCGCCCCUCCUCUCUCCCAGGCUCUUCCUCCUGCCCCCUUCUUGCAACUCUCCUUAAUUUUGUUUGGCUUUUGGAUGAUUAUAAUUAUUUUUAUUUUUGAAUUUAUAUAAAGUAUAUGUGUGUGUGUGUGGAGCUGAGACAGGCUCGGCAGCGGCACAGAAUGAGGGAAGACGAGAAAGAGAGUGGGAGAGAGAGAGGCAGAGAGGGAGAGAGGGAGAGUGACAGCAGCGCUCGCGGGGGCUCAACCCCCAGACCUCCAGAAAUGACGUCAGAAUCAUUUGCAUCCCGCUGCCUCUACCUGCCUGGUCCAGCUGGGACCCUGCCUCGCCGGCCGCAUGGCCAGAGGGUUGGAAAUUAAUGAUCAUGAGCUCGUAUUUGAUGG2000000006ACUCUAACUACAUCGAUCCGAAAUUUCCUCCAUGCGAAGAAUAUUCGCAAAAUAGCUACAUCCCUGAACACAGUCCGGAAUAUUACGGCCGGACCAGGGAAUCGGGAUUCCAGCAUCACCACCAGGAGCUGUACCCACCACCGCCUCCGCGCCCUAGCUACCCUGAGCGCCAGUAUAGCUGCACCAGUCUCCAGGGGCCCGGCAAUUCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAUCACAGUCGCUCUGCGAGCCGGCGCCUCUCUCAGGCGCCUCCGCCUCCCCGUCCCCAGCCCCGCCAGCCUGCAGCCAGCCAGCCCCCGACCAUCCC2000000009UCCAGCGCCGCCAGCAAGCAACCCAUAGUCUACCCAUGGAUGAAAAAAAUUCACGUUAGCACGGUGAACCCCAAUUAUAACGGAGGGGAACCCAAGCGCUCGAGGACAGCCUAUACCCGGCAGCAAGUCCUGGAAUUAGAGAAAGAGUUUCAUUACAACCGCUACCUGACCCGAAGGAGAAGGAUCGAGAUCGCCCACUCGCUGUGCCUCUCUGAGAGGCAGAUCAAAAUCUGGUUCCAAAACCGUCGCAUGAAAUGGAAGAAGGACCACCGACUCCCCAACACCAAAGUCAGGUCAGCACCCCCGGCCGGCGCUGCGCCCAGCACCCUUUCGGCAGCUACCCCGGGUACUUCUGAAGACCACUCCCAGAGCGCCACGCCGCCGGAGCAGCAACGGGCAGAGG2000000006ACAUUACCAGGUUAUAAA2000000006ACAUA2000000006ACUCACACCCCUGCCCCCACCCCAUGCCCCCACCCUCCCCUCACACACAAAUUG2000000006ACUCUUAUUUAUAGAAUUUAAUAUAUAUAUAUAUAUAUAUAUAUAUAGGUUCUUUUCUCUCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	633	983	1386	1404	1409	1463
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	12:54053948:+	12:54054298:+	12:54055189:+	12:54055207:+	12:54055212:+	12:54055266:+
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn dA7YoLwHrzgR ksEP666umrV9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm NjZ8bGGJsNSR QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8