General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000540022
Gene ID:	ENSG00000067182
Gene Name:	TNFRSF1A
Sequence (UNICHARACTER ENCODING)	AGAAUUCUCUGGACUGAGGCUCCAGUUCUGGCCUUUGGGGUUCAAGAUCACUGGGACCAGGCCGUGAUCUCUAUGCCCGAGUCUCAACCCUCAACUGUCACCCCAAGGCACUUGGGACGUCCUGGACAGACCGAGUCCCGGGAAGCCCCAGCACUGCCGCUGCCACACUGCCCUGAGCCCAAAUGGGGGAGUGAGAGGCCAUAGCUGUCUGGCAUGGGCCUCUCCACCGUGCCUGACCUGCUGCUGCCACUGGUGCUCCUGGAGCUGUUGGUGGGAAUAUACCCCUCAGGGGUUAUUGGACUGGUCCCUCACCUAGGGGACAGGGAGAAGAGAGAUAGUGUGUGUCCCCAAGGAAAAUAUAUCCACCCUCAAAAUAAUUCGAUPUGCUGUACCAAGUGCCACAAAGAAAUGGGUCAGGUGGAGAUCUCUUCUUGCACAGUGGACCGGGACACCGUGUGUGGCUGCAGGAAGAACCAGUACCGGCAUUAUUGGAGUGAAAACCUUUUCCAGUGCUUCAAUUGCAGCCUCUGCCUCAAUGGGACCGUGCACCUCUCCUGCCAGGAGAAACAGAACACCGUGUGCACCUGCCAUGCAGGUUUCUUUCUAAGAGAAAACGAGUGUGUCUCCUGUAGUAACUGUAAGAAAAGCCUGGAGUGCACGAAGUUGUGCCUACCCCAGAUUGAGAAUGUUAAGGGCACUGAGGACUCAGGCACCACAGUGCUGUUGCCCCUGGUCAUUUUCUUUGGUCUUUGCCUUUUAUCCCUCCUCUUCAUUGGUUUAAUGUAUCGCUACCAACGGUGGAAGUCCAAGCUCUACUCCAUUGUUUGUGGGAAAUCGACACCUGAAAAAGAGGGGGAGCUUGAAGGAACUACUACUAAGCCCCUGGCCCCAAACCCAAGCUUCAGUCCCACUCCAGGCUUCACCCCCACCCUGGGCUUCAGUCCCGUGCCCAGUUCCACCUUCACCUCCAGCUCCACCUAUACCCCC#GUGACUGUCCCAACUUUGCGGCUCCCCGCAGAGAGGUGGCACCACCCUAUCAGGGGGCUGACCCCAPCCUUGCGACAGCCCUCGCCUCCGACCCCAPCCCCAACCCCCUUCAGAAGUGGGAGGACAGCGCCCACAAGCCACAGAGCCUAGACACUGAUGACCCCGCGACGCUGUACGCCGUGGUGGAGAACGUGCCCCCGUUGCGCUGGAAGGAAUUCGUGCGGCGCCUAGGGCUGAGCGACCACGAGAUCGAUCGGCUGGAGCUGCAGAACGGGCGCUGCCUGCGCGAGGCGCAAUACAGCAUGCUGGCGACCUGGAGGCGGCGCACGCCGCGGCGCGAGGCCACGCUGGAGCUGCUGGGACGCGUGCUCCGCGACAUGGЖCCUGCUGGGCUGCCUGGAGGЖCAUCGAGGAGGCGCUUUGCGGCCCCGCCGCCCPCCCGCCCGCGCCCAGUCUUCUCAGAUGAGGCUGCGCCCCUGCGGGCAGCUCUAAGGЖCCGUCCUGCGAGAUCGCCUUCCAACCCCACUUUUUUCUGGAAAGGA
Sequence (SHORT NAMES ENCODING)	AGAAUUCUCUGGACUGAGGCUCCAGUUCUGGCCUUUGGGGUUCAAGAUCACUGGGACCAGGCCGUGAUCUCUAUGCCCGAGUCUCAACCCUCAACUGUCACCCCAAGGCACUUGGGACGUCCUGGACAGACCGAGUCCCGGGAAGCCCCAGCACUGCCGCUGCCACACUGCCCUGAGCCCAAAUGGGGGAGUGAGAGGCCAUAGCUGUCUGGCAUGGGCCUCUCCACCGUGCCUGACCUGCUGCUGCCACUGGUGCUCCUGGAGCUGUUGGUGGGAAUAUACCCCUCAGGGGUUAUUGGACUGGUCCCUCACCUAGGGGACAGGGAGAAGAGAGAUAGUGUGUGUCCCCAAGGAAAAUAUAUCCACCCUCAAAAUAAUUCGAUYUGCUGUACCAAGUGCCACAAAGAAAUGGGUCAGGUGGAGAUCUCUUCUUGCACAGUGGACCGGGACACCGUGUGUGGCUGCAGGAAGAACCAGUACCGGCAUUAUUGGAGUGAAAACCUUUUCCAGUGCUUCAAUUGCAGCCUCUGCCUCAAUGGGACCGUGCACCUCUCCUGCCAGGAGAAACAGAACACCGUGUGCACCUGCCAUGCAGGUUUCUUUCUAAGAGAAAACGAGUGUGUCUCCUGUAGUAACUGUAAGAAAAGCCUGGAGUGCACGAAGUUGUGCCUACCCCAGAUUGAGAAUGUUAAGGGCACUGAGGACUCAGGCACCACAGUGCUGUUGCCCCUGGUCAUUUUCUUUGGUCUUUGCCUUUUAUCCCUCCUCUUCAUUGGUUUAAUGUAUCGCUACCAACGGUGGAAGUCCAAGCUCUACUCCAUUGUUUGUGGGAAAUCGACACCUGAAAAAGAGGGGGAGCUUGAAGGAACUACUACUAAGCCCCUGGCCCCAAACCCAAGCUUCAGUCCCACUCCAGGCUUCACCCCCACCCUGGGCUUCAGUCCCGUGCCCAGUUCCACCUUCACCUCCAGCUCCACCUAUACCCCCGmGUGACUGUCCCAACUUUGCGGCUCCCCGCAGAGAGGUGGCACCACCCUAUCAGGGGGCUGACCCCAYCCUUGCGACAGCCCUCGCCUCCGACCCCAYCCCCAACCCCCUUCAGAAGUGGGAGGACAGCGCCCACAAGCCACAGAGCCUAGACACUGAUGACCCCGCGACGCUGUACGCCGUGGUGGAGAACGUGCCCCCGUUGCGCUGGAAGGAAUUCGUGCGGCGCCUAGGGCUGAGCGACCACGAGAUCGAUCGGCUGGAGCUGCAGAACGGGCGCUGCCUGCGCGAGGCGCAAUACAGCAUGCUGGCGACCUGGAGGCGGCGCACGCCGCGGCGCGAGGCCACGCUGGAGCUGCUGGGACGCGUGCUCCGCGACAUGGm6ACCUGCUGGGCUGCCUGGAGGm6ACAUCGAGGAGGCGCUUUGCGGCCCCGCCGCCCYCCCGCCCGCGCCCAGUCUUCUCAGAUGAGGCUGCGCCCCUGCGGGCAGCUCUAAGGm6ACCGUCCUGCGAGAUCGCCUUCCAACCCCACUUUUUUCUGGAAAGGA
Sequence (MODOMICS CODE ENCODING)	AGAAUUCUCUGGACUGAGGCUCCAGUUCUGGCCUUUGGGGUUCAAGAUCACUGGGACCAGGCCGUGAUCUCUAUGCCCGAGUCUCAACCCUCAACUGUCACCCCAAGGCACUUGGGACGUCCUGGACAGACCGAGUCCCGGGAAGCCCCAGCACUGCCGCUGCCACACUGCCCUGAGCCCAAAUGGGGGAGUGAGAGGCCAUAGCUGUCUGGCAUGGGCCUCUCCACCGUGCCUGACCUGCUGCUGCCACUGGUGCUCCUGGAGCUGUUGGUGGGAAUAUACCCCUCAGGGGUUAUUGGACUGGUCCCUCACCUAGGGGACAGGGAGAAGAGAGAUAGUGUGUGUCCCCAAGGAAAAUAUAUCCACCCUCAAAAUAAUUCGAU2000000009UUGCUGUACCAAGUGCCACAAAGAAAUGGGUCAGGUGGAGAUCUCUUCUUGCACAGUGGACCGGGACACCGUGUGUGGCUGCAGGAAGAACCAGUACCGGCAUUAUUGGAGUGAAAACCUUUUCCAGUGCUUCAAUUGCAGCCUCUGCCUCAAUGGGACCGUGCACCUCUCCUGCCAGGAGAAACAGAACACCGUGUGCACCUGCCAUGCAGGUUUCUUUCUAAGAGAAAACGAGUGUGUCUCCUGUAGUAACUGUAAGAAAAGCCUGGAGUGCACGAAGUUGUGCCUACCCCAGAUUGAGAAUGUUAAGGGCACUGAGGACUCAGGCACCACAGUGCUGUUGCCCCUGGUCAUUUUCUUUGGUCUUUGCCUUUUAUCCCUCCUCUUCAUUGGUUUAAUGUAUCGCUACCAACGGUGGAAGUCCAAGCUCUACUCCAUUGUUUGUGGGAAAUCGACACCUGAAAAAGAGGGGGAGCUUGAAGGAACUACUACUAAGCCCCUGGCCCCAAACCCAAGCUUCAGUCCCACUCCAGGCUUCACCCCCACCCUGGGCUUCAGUCCCGUGCCCAGUUCCACCUUCACCUCCAGCUCCACCUAUACCCCC2000000090GGUGACUGUCCCAACUUUGCGGCUCCCCGCAGAGAGGUGGCACCACCCUAUCAGGGGGCUGACCCCA2000000009UCCUUGCGACAGCCCUCGCCUCCGACCCCA2000000009UCCCCAACCCCCUUCAGAAGUGGGAGGACAGCGCCCACAAGCCACAGAGCCUAGACACUGAUGACCCCGCGACGCUGUACGCCGUGGUGGAGAACGUGCCCCCGUUGCGCUGGAAGGAAUUCGUGCGGCGCCUAGGGCUGAGCGACCACGAGAUCGAUCGGCUGGAGCUGCAGAACGGGCGCUGCCUGCGCGAGGCGCAAUACAGCAUGCUGGCGACCUGGAGGCGGCGCACGCCGCGGCGCGAGGCCACGCUGGAGCUGCUGGGACGCGUGCUCCGCGACAUGG2000000006ACCUGCUGGGCUGCCUGGAGG2000000006ACAUCGAGGAGGCGCUUUGCGGCCCCGCCGCCC2000000009UCCCGCCCGCGCCCAGUCUUCUCAGAUGAGGCUGCGCCCCUGCGGGCAGCUCUAAGG2000000006ACCGUCCUGCGAGAUCGCCUUCCAACCCCACUUUUUUCUGGAAAGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	384	988	1055	1085	1370	1391	1424	1481
Modification Positions	Y	Gm	Y	Y	m6A	m6A	Y	m6A
Genomic Coordinates	12:6334113:-	12:6329931:-	12:6329864:-	12:6329834:-	12:6329394:-	12:6329373:-	12:6329340:-	12:6329283:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8