General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000644356
Gene ID:	ENSG00000111642
Gene Name:	CHD4
Sequence (UNICHARACTER ENCODING)	AGGCCGACCAGGCAAGAAGCUCAAGAAGGUGAAGCUUCGGAAGUUGGAGAGGCCUCCAGAAACGCCAACAGUUGAUCCAACAGUGAAGUAUGAGCGACAGCCAGAGUACCUGGAUGCUACAGGUGGAACCCUGCACCCCUAUCAAAUGGAGGGCCUGAAUUGGUUGCGCUUCUCCUGGGCUCAGGGCACUGACACCAUCUUGGCUGAUGAGAUGGGCCUUGGGAAAACUGUACAGACAGCAGUCUUCCUGUAUUCCCUUUACAAGGAGGGUCAUUCCAAAGGCCCCUUCCUAGUGAGCGCCCCUCUUUCUACCAUCAUCAACUGGGAGCGGGAGUUUGAAAUGUGGGCUCCAGACAUGUAUGUCGUAACCUAUGUGGGUGACAAGGACAGCCGUGCCAUCAUCCGAGAGAAUGAGUUCUCCUUUGAAGACAAUGCCAUUCGUGGUGGCAAGAAGGCCUCCCGCAUGAAGAAAGAGGCAUCUGUGAAAUUCCAUGUGCUGCUGACAPCCUAUGAAUUGAUCACCAUUGACAUGGCUAUUUUGGGCUCUAUUGAUUGGGCCUGCCUCAUCGUGGAUGAAGCCCAUCGGCUGAAGAACAAUCAGUCUAAGUUCUUCCGGGUAUUGAAUGGUUACUCACUCCAGCACAAGCUGUUGCUGACUGGGACACCAUUACAAAACAAUCUGGAAGAGUUGUUUCAUCUGCUCAACUUUCUCACCCCCGAGAGGUUCCACAAUUUGGAAGGUUUUUUGGAGGAGUUUGCUGACAUUGCCAAGGAGGACCAGAUAAAAAAACUGCAUGACAUGCUGGGGCCGCACAUGUUGCGGCGGCUCAAAGCCGAUGUGUUCAAGAACAUGCCCUCCAAGACAGAACUAAUUGUGCGUGUGGAGCUGAGCCCUAUGCAGAAGAAAUACUACAAGUACAPCCUCACUCGAAAUUUUGAAGCACUCAAUGCCCGAGGUGGUGGCAACCAGGUGUCUCUGCUGAAUGUGGUGAUGGAUCUUAAGAAGUGCUGCAACCAPCCAUACCUCUUCCCUGUGGCUGCAAUGGAAGCUCCUAAGAUGCCUAAUGGCAUGUAUGAUGGCAGUGCCCUAAUCAGAGCAUCUGGGAAAUUAUUGCUGCUGCAGAAAAUGCUCAAGAACCUUAAGGAGGGUGGGCAUCGUGUACUCAUCUUUUCCCAGAUGACCAAGAUGCUAGЖCCUGCUAGAGGAUUUCUUGGAACAUGAAGGUUAUAAAUACGAACGCAUCGAUGGUGGAAUCACUGGGAACAUGCGGCAAGAGGCCAUUGACCGCUUCAAUGCACCGGGUGCUCAGCAGUUCUGCUUCUUGCUUUCCACUCGAGCUGGGGGCCUUGGAAUCAAUCUGGCCACUGCUGACACAGUUAUUAUCUAUGACUCUGACUGGAACCCCCAUAAUGACAUUCAGGCCUPUAGCAGAGCUCACCGGAUUGGGCAAAAUAAAAAGGUAAUGAUCUACCGGUUUGUGACCCGUGCGUCAGUGGAGGAGCGCAUCACGCAGGUGGCAAAGAAGAAAAUGAUGCUGACGCAUCUAGUGGUGCGGCCUGGGCUGGGCUCCAAGACUGGAUCUAUGUCCAAACAGGAGCUUGAUGAUAUCCUCAAAUUUGGCACUGAGGAACUAUUCAAGGAUGAAGCCACUGAUGGAGGAGGAGACAACAAAGAGGGAGAAGAUAGCAGUGUUAUCCACUACGAUGAUAAGGCCAUUGAACGGCUGCUAGACCGUAACCAGGAUGAGACUGAAGACACAGAAUUGCAGGGCAUGAAUGAAUAUUUGAGCUCAUUCAAAGUGGCCCAGUAUGUGGUACGGGAAGAAGAAAUGGGGGAGGAAGAGGAGGUAGAACGGGAAAUCAUUAAACAGGAAGAAAGUGUGGAUCCUGACUACUGGGAGAAAUUGCUGCGGCACCAUUAUGAGCAGCAGCAAGAAGAUCUAGCCCGAAAUCUGGGCAAAGGAAAAAGAAUCCGUAAЖCAGGUCAACUACAAUGAUGGCUCCCAGGAGGACCGAGGUAUUGGCAGGACGACCAGUCCGACAACCAGUCCGAUUACUCAGUGGCUUCAGAGGAAGGUGAUGAAGACUUUGAUGAACGUUCAGAAGCUCCCCGUAGGCCCAGUCGUAAGGGCCUGCGGAAUGAUAAAGAUAAGCCAUUGCCUCCUCUGUUGGCCCGUGUUGGUGGGAAUAUUGAAGUACUUGGUUUUAAUGCUCGUCAGCGAAAAGCCUUUCUUAAUGCAAUUAUGCGAUAUGGUAUGCCACCUCAGGAUGCUUUUACUACCCAGUGGCUUGUAAGAGACCUGCGAGGCAAAUCAGAGAAAGAGUUCAAGGCAUAUGUCUCUCUUUUCAUGCGGCAUUUAUGUGAGCCGGGGGCAGAUGGGGCUGAGACCUUUGCUGAUGGUGUCCCCCGAGAAGGCCUGUCUCGCCAGCAUGUCCUUACUAGAAUUGGUGUUAUGUCUUUGAUUCGCAAGAAGGUUCAGGAGUUUGAACAUGUUAAUGGGCGCUGGAGCAUGCCUGAACUGGCUGAGGUGGAGGAAAACAAGAAGAUGUCCCAGCCAGGGUCACCCUCCCCAAAAACUCCUACACCCPCCACUCCAGGGGACACGCAGCCCAACACUCCUGCACCUGUCCCACCUGCUGAAGAUGGGAUAAAAAUAGAGGAAAAUAGCCUCAAAGAAGAAGAGAGCAUAGAAGGAGAAAAGGAGGUUAAAUCUACAGCCCCUGAGACUGCCAUUGAGUGUACACAGGCCCCUGCCCCUGCCUCAGAGGAUGAAAAGGUCGUUGUUGAACCCCCUGAGGGAGAGGAGAAAGUGGAAAAGGCAGAGGUGAAGGAGAGAACAGAGGAACCUAUGGAGACAGAGCCCAAAGGUAAAGGUAUCCACAUUUUUUUUGUUUGUUUGUUUGUUUUGAGACAGUGUAGUGCUGCCGCCAGGCUGGAGUGCUGUGGCGCGAUCUUGGCUUACUGCAACCUCCACCUCCCAGGUUCGAGCGAUUCUCCUGCCUCACCCUCCCGAGGAGCUGGGAUUACAGACAGACGCCAUCAUGCCCAGCUAAUUUUUGUAUUUUUAGUAGAGACA
Sequence (SHORT NAMES ENCODING)	AGGCCGACCAGGCAAGAAGCUCAAGAAGGUGAAGCUUCGGAAGUUGGAGAGGCCUCCAGAAACGCCAACAGUUGAUCCAACAGUGAAGUAUGAGCGACAGCCAGAGUACCUGGAUGCUACAGGUGGAACCCUGCACCCCUAUCAAAUGGAGGGCCUGAAUUGGUUGCGCUUCUCCUGGGCUCAGGGCACUGACACCAUCUUGGCUGAUGAGAUGGGCCUUGGGAAAACUGUACAGACAGCAGUCUUCCUGUAUUCCCUUUACAAGGAGGGUCAUUCCAAAGGCCCCUUCCUAGUGAGCGCCCCUCUUUCUACCAUCAUCAACUGGGAGCGGGAGUUUGAAAUGUGGGCUCCAGACAUGUAUGUCGUAACCUAUGUGGGUGACAAGGACAGCCGUGCCAUCAUCCGAGAGAAUGAGUUCUCCUUUGAAGACAAUGCCAUUCGUGGUGGCAAGAAGGCCUCCCGCAUGAAGAAAGAGGCAUCUGUGAAAUUCCAUGUGCUGCUGACAYCCUAUGAAUUGAUCACCAUUGACAUGGCUAUUUUGGGCUCUAUUGAUUGGGCCUGCCUCAUCGUGGAUGAAGCCCAUCGGCUGAAGAACAAUCAGUCUAAGUUCUUCCGGGUAUUGAAUGGUUACUCACUCCAGCACAAGCUGUUGCUGACUGGGACACCAUUACAAAACAAUCUGGAAGAGUUGUUUCAUCUGCUCAACUUUCUCACCCCCGAGAGGUUCCACAAUUUGGAAGGUUUUUUGGAGGAGUUUGCUGACAUUGCCAAGGAGGACCAGAUAAAAAAACUGCAUGACAUGCUGGGGCCGCACAUGUUGCGGCGGCUCAAAGCCGAUGUGUUCAAGAACAUGCCCUCCAAGACAGAACUAAUUGUGCGUGUGGAGCUGAGCCCUAUGCAGAAGAAAUACUACAAGUACAYCCUCACUCGAAAUUUUGAAGCACUCAAUGCCCGAGGUGGUGGCAACCAGGUGUCUCUGCUGAAUGUGGUGAUGGAUCUUAAGAAGUGCUGCAACCAYCCAUACCUCUUCCCUGUGGCUGCAAUGGAAGCUCCUAAGAUGCCUAAUGGCAUGUAUGAUGGCAGUGCCCUAAUCAGAGCAUCUGGGAAAUUAUUGCUGCUGCAGAAAAUGCUCAAGAACCUUAAGGAGGGUGGGCAUCGUGUACUCAUCUUUUCCCAGAUGACCAAGAUGCUAGm6ACCUGCUAGAGGAUUUCUUGGAACAUGAAGGUUAUAAAUACGAACGCAUCGAUGGUGGAAUCACUGGGAACAUGCGGCAAGAGGCCAUUGACCGCUUCAAUGCACCGGGUGCUCAGCAGUUCUGCUUCUUGCUUUCCACUCGAGCUGGGGGCCUUGGAAUCAAUCUGGCCACUGCUGACACAGUUAUUAUCUAUGACUCUGACUGGAACCCCCAUAAUGACAUUCAGGCCUYUAGCAGAGCUCACCGGAUUGGGCAAAAUAAAAAGGUAAUGAUCUACCGGUUUGUGACCCGUGCGUCAGUGGAGGAGCGCAUCACGCAGGUGGCAAAGAAGAAAAUGAUGCUGACGCAUCUAGUGGUGCGGCCUGGGCUGGGCUCCAAGACUGGAUCUAUGUCCAAACAGGAGCUUGAUGAUAUCCUCAAAUUUGGCACUGAGGAACUAUUCAAGGAUGAAGCCACUGAUGGAGGAGGAGACAACAAAGAGGGAGAAGAUAGCAGUGUUAUCCACUACGAUGAUAAGGCCAUUGAACGGCUGCUAGACCGUAACCAGGAUGAGACUGAAGACACAGAAUUGCAGGGCAUGAAUGAAUAUUUGAGCUCAUUCAAAGUGGCCCAGUAUGUGGUACGGGAAGAAGAAAUGGGGGAGGAAGAGGAGGUAGAACGGGAAAUCAUUAAACAGGAAGAAAGUGUGGAUCCUGACUACUGGGAGAAAUUGCUGCGGCACCAUUAUGAGCAGCAGCAAGAAGAUCUAGCCCGAAAUCUGGGCAAAGGAAAAAGAAUCCGUAAm6ACAGGUCAACUACAAUGAUGGCUCCCAGGAGGACCGAGGUAUUGGCAGGACGACCAGUCCGACAACCAGUCCGAUUACUCAGUGGCUUCAGAGGAAGGUGAUGAAGACUUUGAUGAACGUUCAGAAGCUCCCCGUAGGCCCAGUCGUAAGGGCCUGCGGAAUGAUAAAGAUAAGCCAUUGCCUCCUCUGUUGGCCCGUGUUGGUGGGAAUAUUGAAGUACUUGGUUUUAAUGCUCGUCAGCGAAAAGCCUUUCUUAAUGCAAUUAUGCGAUAUGGUAUGCCACCUCAGGAUGCUUUUACUACCCAGUGGCUUGUAAGAGACCUGCGAGGCAAAUCAGAGAAAGAGUUCAAGGCAUAUGUCUCUCUUUUCAUGCGGCAUUUAUGUGAGCCGGGGGCAGAUGGGGCUGAGACCUUUGCUGAUGGUGUCCCCCGAGAAGGCCUGUCUCGCCAGCAUGUCCUUACUAGAAUUGGUGUUAUGUCUUUGAUUCGCAAGAAGGUUCAGGAGUUUGAACAUGUUAAUGGGCGCUGGAGCAUGCCUGAACUGGCUGAGGUGGAGGAAAACAAGAAGAUGUCCCAGCCAGGGUCACCCUCCCCAAAAACUCCUACACCCYCCACUCCAGGGGACACGCAGCCCAACACUCCUGCACCUGUCCCACCUGCUGAAGAUGGGAUAAAAAUAGAGGAAAAUAGCCUCAAAGAAGAAGAGAGCAUAGAAGGAGAAAAGGAGGUUAAAUCUACAGCCCCUGAGACUGCCAUUGAGUGUACACAGGCCCCUGCCCCUGCCUCAGAGGAUGAAAAGGUCGUUGUUGAACCCCCUGAGGGAGAGGAGAAAGUGGAAAAGGCAGAGGUGAAGGAGAGAACAGAGGAACCUAUGGAGACAGAGCCCAAAGGUAAAGGUAUCCACAUUUUUUUUGUUUGUUUGUUUGUUUUGAGACAGUGUAGUGCUGCCGCCAGGCUGGAGUGCUGUGGCGCGAUCUUGGCUUACUGCAACCUCCACCUCCCAGGUUCGAGCGAUUCUCCUGCCUCACCCUCCCGAGGAGCUGGGAUUACAGACAGACGCCAUCAUGCCCAGCUAAUUUUUGUAUUUUUAGUAGAGACA
Sequence (MODOMICS CODE ENCODING)	AGGCCGACCAGGCAAGAAGCUCAAGAAGGUGAAGCUUCGGAAGUUGGAGAGGCCUCCAGAAACGCCAACAGUUGAUCCAACAGUGAAGUAUGAGCGACAGCCAGAGUACCUGGAUGCUACAGGUGGAACCCUGCACCCCUAUCAAAUGGAGGGCCUGAAUUGGUUGCGCUUCUCCUGGGCUCAGGGCACUGACACCAUCUUGGCUGAUGAGAUGGGCCUUGGGAAAACUGUACAGACAGCAGUCUUCCUGUAUUCCCUUUACAAGGAGGGUCAUUCCAAAGGCCCCUUCCUAGUGAGCGCCCCUCUUUCUACCAUCAUCAACUGGGAGCGGGAGUUUGAAAUGUGGGCUCCAGACAUGUAUGUCGUAACCUAUGUGGGUGACAAGGACAGCCGUGCCAUCAUCCGAGAGAAUGAGUUCUCCUUUGAAGACAAUGCCAUUCGUGGUGGCAAGAAGGCCUCCCGCAUGAAGAAAGAGGCAUCUGUGAAAUUCCAUGUGCUGCUGACA2000000009UCCUAUGAAUUGAUCACCAUUGACAUGGCUAUUUUGGGCUCUAUUGAUUGGGCCUGCCUCAUCGUGGAUGAAGCCCAUCGGCUGAAGAACAAUCAGUCUAAGUUCUUCCGGGUAUUGAAUGGUUACUCACUCCAGCACAAGCUGUUGCUGACUGGGACACCAUUACAAAACAAUCUGGAAGAGUUGUUUCAUCUGCUCAACUUUCUCACCCCCGAGAGGUUCCACAAUUUGGAAGGUUUUUUGGAGGAGUUUGCUGACAUUGCCAAGGAGGACCAGAUAAAAAAACUGCAUGACAUGCUGGGGCCGCACAUGUUGCGGCGGCUCAAAGCCGAUGUGUUCAAGAACAUGCCCUCCAAGACAGAACUAAUUGUGCGUGUGGAGCUGAGCCCUAUGCAGAAGAAAUACUACAAGUACA2000000009UCCUCACUCGAAAUUUUGAAGCACUCAAUGCCCGAGGUGGUGGCAACCAGGUGUCUCUGCUGAAUGUGGUGAUGGAUCUUAAGAAGUGCUGCAACCA2000000009UCCAUACCUCUUCCCUGUGGCUGCAAUGGAAGCUCCUAAGAUGCCUAAUGGCAUGUAUGAUGGCAGUGCCCUAAUCAGAGCAUCUGGGAAAUUAUUGCUGCUGCAGAAAAUGCUCAAGAACCUUAAGGAGGGUGGGCAUCGUGUACUCAUCUUUUCCCAGAUGACCAAGAUGCUAG2000000006ACCUGCUAGAGGAUUUCUUGGAACAUGAAGGUUAUAAAUACGAACGCAUCGAUGGUGGAAUCACUGGGAACAUGCGGCAAGAGGCCAUUGACCGCUUCAAUGCACCGGGUGCUCAGCAGUUCUGCUUCUUGCUUUCCACUCGAGCUGGGGGCCUUGGAAUCAAUCUGGCCACUGCUGACACAGUUAUUAUCUAUGACUCUGACUGGAACCCCCAUAAUGACAUUCAGGCCU2000000009UUAGCAGAGCUCACCGGAUUGGGCAAAAUAAAAAGGUAAUGAUCUACCGGUUUGUGACCCGUGCGUCAGUGGAGGAGCGCAUCACGCAGGUGGCAAAGAAGAAAAUGAUGCUGACGCAUCUAGUGGUGCGGCCUGGGCUGGGCUCCAAGACUGGAUCUAUGUCCAAACAGGAGCUUGAUGAUAUCCUCAAAUUUGGCACUGAGGAACUAUUCAAGGAUGAAGCCACUGAUGGAGGAGGAGACAACAAAGAGGGAGAAGAUAGCAGUGUUAUCCACUACGAUGAUAAGGCCAUUGAACGGCUGCUAGACCGUAACCAGGAUGAGACUGAAGACACAGAAUUGCAGGGCAUGAAUGAAUAUUUGAGCUCAUUCAAAGUGGCCCAGUAUGUGGUACGGGAAGAAGAAAUGGGGGAGGAAGAGGAGGUAGAACGGGAAAUCAUUAAACAGGAAGAAAGUGUGGAUCCUGACUACUGGGAGAAAUUGCUGCGGCACCAUUAUGAGCAGCAGCAAGAAGAUCUAGCCCGAAAUCUGGGCAAAGGAAAAAGAAUCCGUAA2000000006ACAGGUCAACUACAAUGAUGGCUCCCAGGAGGACCGAGGUAUUGGCAGGACGACCAGUCCGACAACCAGUCCGAUUACUCAGUGGCUUCAGAGGAAGGUGAUGAAGACUUUGAUGAACGUUCAGAAGCUCCCCGUAGGCCCAGUCGUAAGGGCCUGCGGAAUGAUAAAGAUAAGCCAUUGCCUCCUCUGUUGGCCCGUGUUGGUGGGAAUAUUGAAGUACUUGGUUUUAAUGCUCGUCAGCGAAAAGCCUUUCUUAAUGCAAUUAUGCGAUAUGGUAUGCCACCUCAGGAUGCUUUUACUACCCAGUGGCUUGUAAGAGACCUGCGAGGCAAAUCAGAGAAAGAGUUCAAGGCAUAUGUCUCUCUUUUCAUGCGGCAUUUAUGUGAGCCGGGGGCAGAUGGGGCUGAGACCUUUGCUGAUGGUGUCCCCCGAGAAGGCCUGUCUCGCCAGCAUGUCCUUACUAGAAUUGGUGUUAUGUCUUUGAUUCGCAAGAAGGUUCAGGAGUUUGAACAUGUUAAUGGGCGCUGGAGCAUGCCUGAACUGGCUGAGGUGGAGGAAAACAAGAAGAUGUCCCAGCCAGGGUCACCCUCCCCAAAAACUCCUACACCC2000000009UCCACUCCAGGGGACACGCAGCCCAACACUCCUGCACCUGUCCCACCUGCUGAAGAUGGGAUAAAAAUAGAGGAAAAUAGCCUCAAAGAAGAAGAGAGCAUAGAAGGAGAAAAGGAGGUUAAAUCUACAGCCCCUGAGACUGCCAUUGAGUGUACACAGGCCCCUGCCCCUGCCUCAGAGGAUGAAAAGGUCGUUGUUGAACCCCCUGAGGGAGAGGAGAAAGUGGAAAAGGCAGAGGUGAAGGAGAGAACAGAGGAACCUAUGGAGACAGAGCCCAAAGGUAAAGGUAUCCACAUUUUUUUUGUUUGUUUGUUUGUUUUGAGACAGUGUAGUGCUGCCGCCAGGCUGGAGUGCUGUGGCGCGAUCUUGGCUUACUGCAACCUCCACCUCCCAGGUUCGAGCGAUUCUCCUGCCUCACCCUCCCGAGGAGCUGGGAUUACAGACAGACGCCAUCAUGCCCAGCUAAUUUUUGUAUUUUUAGUAGAGACA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	506	921	1018	1194	1425	1978	2587
Modification Positions	Y	Y	Y	m6A	Y	m6A	Y
Genomic Coordinates	12:6593192:-	12:6592040:-	12:6591943:-	12:6591567:-	12:6587945:-	12:6583235:-	12:6581700:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 iezFbUdmY3A6 Yfn77uLS5tv8	8cMbzB4aD5Se ArijeGVTwYBw bXBqJigD9oV3 eGNFqdoGxzRm iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8