General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000228251
Gene ID:	ENSG00000060138
Gene Name:	YBX3
Sequence (UNICHARACTER ENCODING)	AGUAAGAUCGAGCGAGGAGCCCAAGAGAGAGCGCGCAGCACGAAGCUCGAGCCGCCUCCGCCGCGCGACCCCACCUCGGCCGCCGCCGCCUGCGCCGCGAGAUCCGCCCCGGCCUCCCCGAGAGCGAGCCCCGGCCGCCGCGACCACCAGCCGCGCUAACCGCCGACCAACCGCCACCGAGGCGCCUGAGCGAGAGCAGAGGAGGAGGAGGCAUGAGUGAGGCGGGCGAGGCCACCACCACCACCACCACCACCCUCCCGCAGGCUCCGACGGAGGCGGCCGCCGCGGCUCCCCAGGACCCCGCGCCCAAGAGCCCGGUGGGCAGCGGUGCGCCCCAGGCCGCGGCCCCGGCGCCCGCCGCCCACGUCGCAGGAAACCCCGGUGGGGACGCGGCCCCCGCAGCCACGGGCACCGCGGCCGCCGCCUCUPUAGCCACCGCCGCCGGCAGCGAAGACGCGGAGAAAAAAGUUCUCGCCACCAAAGUCCUUGGCACUGUCAAAUGGUUCAACGUCAGAAAUGGAUAUGGAUUUAUAAAUCGAAAUGACACCAAAGAAGAUGUAUUUGUACAUCAGACUGCCAUCAAGAAGAAUAACCCACGGAAAUAUCUGCGCAGUGUAGGAGAUGGAGAAACUGUAGAGUUUGAUGUGGUUGAAGGAGAGAAGGGUGCAGAAGCUGCCAAUGUGACUGGCCCGGAUGGAGUUCCUGUGGAAGGGAGUCGUUACGCUGCAGAUCGGCGCCGUUACЖGACGUGGCUACUAUGGAAGGCGCCGUGGCCCUCCCCGGAAUUACGCUGGGGAGGAGGAGGAGGAAGGGAGCGGCAGCAGUGAAGGAUPUGACCCCCCUGCCЖCUGAUAGGCAGUUCUCUGGGGCBCGGAAUCAGCUGCGCCGCCCCCAGUAUCGCCCUCAGUACCGGCAGCGGCGGUUCCCGCCUUACCACGUGGGACAGACCUUUGACCGUCGCUCACGGGUCUUACCCCAPCCCAACAGAAUACAGGCUGGUGAGAUUGGAGAGAUGAAGGAUGGAGUCCCAGAGGGAGCACAACUUCAGGGACCGGUUCAUCGAAAUCCAACUUACCGCCCAAGGUACCGUAGCAGGGGACCUCCUCGCCCACGACCUGCCCCAGCAGUUGGAGAGGCUGAAGAUAAAGAAAAUCAGCAAGCCACCAGUGGUCCAAACCAGCCGUCUGUUCGCCGUGGAUACCGGCGUCCCUACЖAUUACCGGCGUCGCCCGCGUCCUCCUAACGCUCCUUCACAAGAUGGCAAAGAGGCCAAGGCAGGUGAAGCACCAACUGAGAACCCUGCUCCACCCACCCAGCAGAGCAGUGCUGAGUAACACCAGGCUCCUCAGGCACCUUCACCAUCGGCAGGUGACCUAAAGAAUUAAUGACCAUUCAGAAAUAAAGCAAAAAGCAGGCCACAACCUUAACCAACACCAAAGAAACAPCCAAGCAAUAAAGUGGAAGACUAACCAAGAUUUGGЖCAUUGGAAUGUUUACUGUUAUUCUPUAAGAAЖCAACUACAAAAAGAAAAUGUCAACAAAUUUUUCCAGCAAGCUGAGAACCUGGGAAUUCCUGCACGGAAGACAAGAGAGUAGCCUCUCCAGUUUCAGCAACCGCUAGGUUUCUAUUUUUUUUCCUGGUUUUUACUGUUUUGGUAAUAUAUAUAUUGAAЖCAAGAAAUAUUAAUACCACAUGGGGAGAЖCCCCAACCAAAGAAAUCUGAAAUAUAUAGUAAAUGCUUUUUUUUCCGUUUUUGUUCAUUUUGGAUGCUGGUGCUAAЖCCUCCAAGUGUCAUGAUUUAAAAAAAAAAAAAAUUUAUGUCCUUCUUAUUUAUUUCUAGGAUGAGGGGAGGAUAACAUUUUUGCUUUCUUAUGUGACUCUCUUUGAAAAUGUGCAGUAAGAAAUUCCUCAAAAAUAAAAUUUUUACCCUUCAGAGGA
Sequence (SHORT NAMES ENCODING)	AGUAAGAUCGAGCGAGGAGCCCAAGAGAGAGCGCGCAGCACGAAGCUCGAGCCGCCUCCGCCGCGCGACCCCACCUCGGCCGCCGCCGCCUGCGCCGCGAGAUCCGCCCCGGCCUCCCCGAGAGCGAGCCCCGGCCGCCGCGACCACCAGCCGCGCUAACCGCCGACCAACCGCCACCGAGGCGCCUGAGCGAGAGCAGAGGAGGAGGAGGCAUGAGUGAGGCGGGCGAGGCCACCACCACCACCACCACCACCCUCCCGCAGGCUCCGACGGAGGCGGCCGCCGCGGCUCCCCAGGACCCCGCGCCCAAGAGCCCGGUGGGCAGCGGUGCGCCCCAGGCCGCGGCCCCGGCGCCCGCCGCCCACGUCGCAGGAAACCCCGGUGGGGACGCGGCCCCCGCAGCCACGGGCACCGCGGCCGCCGCCUCUYUAGCCACCGCCGCCGGCAGCGAAGACGCGGAGAAAAAAGUUCUCGCCACCAAAGUCCUUGGCACUGUCAAAUGGUUCAACGUCAGAAAUGGAUAUGGAUUUAUAAAUCGAAAUGACACCAAAGAAGAUGUAUUUGUACAUCAGACUGCCAUCAAGAAGAAUAACCCACGGAAAUAUCUGCGCAGUGUAGGAGAUGGAGAAACUGUAGAGUUUGAUGUGGUUGAAGGAGAGAAGGGUGCAGAAGCUGCCAAUGUGACUGGCCCGGAUGGAGUUCCUGUGGAAGGGAGUCGUUACGCUGCAGAUCGGCGCCGUUACm6AGACGUGGCUACUAUGGAAGGCGCCGUGGCCCUCCCCGGAAUUACGCUGGGGAGGAGGAGGAGGAAGGGAGCGGCAGCAGUGAAGGAUYUGACCCCCCUGCCm6ACUGAUAGGCAGUUCUCUGGGGCCmCGGAAUCAGCUGCGCCGCCCCCAGUAUCGCCCUCAGUACCGGCAGCGGCGGUUCCCGCCUUACCACGUGGGACAGACCUUUGACCGUCGCUCACGGGUCUUACCCCAYCCCAACAGAAUACAGGCUGGUGAGAUUGGAGAGAUGAAGGAUGGAGUCCCAGAGGGAGCACAACUUCAGGGACCGGUUCAUCGAAAUCCAACUUACCGCCCAAGGUACCGUAGCAGGGGACCUCCUCGCCCACGACCUGCCCCAGCAGUUGGAGAGGCUGAAGAUAAAGAAAAUCAGCAAGCCACCAGUGGUCCAAACCAGCCGUCUGUUCGCCGUGGAUACCGGCGUCCCUACm6AAUUACCGGCGUCGCCCGCGUCCUCCUAACGCUCCUUCACAAGAUGGCAAAGAGGCCAAGGCAGGUGAAGCACCAACUGAGAACCCUGCUCCACCCACCCAGCAGAGCAGUGCUGAGUAACACCAGGCUCCUCAGGCACCUUCACCAUCGGCAGGUGACCUAAAGAAUUAAUGACCAUUCAGAAAUAAAGCAAAAAGCAGGCCACAACCUUAACCAACACCAAAGAAACAYCCAAGCAAUAAAGUGGAAGACUAACCAAGAUUUGGm6ACAUUGGAAUGUUUACUGUUAUUCUYUAAGAAm6ACAACUACAAAAAGAAAAUGUCAACAAAUUUUUCCAGCAAGCUGAGAACCUGGGAAUUCCUGCACGGAAGACAAGAGAGUAGCCUCUCCAGUUUCAGCAACCGCUAGGUUUCUAUUUUUUUUCCUGGUUUUUACUGUUUUGGUAAUAUAUAUAUUGAAm6ACAAGAAAUAUUAAUACCACAUGGGGAGAm6ACCCCAACCAAAGAAAUCUGAAAUAUAUAGUAAAUGCUUUUUUUUCCGUUUUUGUUCAUUUUGGAUGCUGGUGCUAAm6ACCUCCAAGUGUCAUGAUUUAAAAAAAAAAAAAAUUUAUGUCCUUCUUAUUUAUUUCUAGGAUGAGGGGAGGAUAACAUUUUUGCUUUCUUAUGUGACUCUCUUUGAAAAUGUGCAGUAAGAAAUUCCUCAAAAAUAAAAUUUUUACCCUUCAGAGGA
Sequence (MODOMICS CODE ENCODING)	AGUAAGAUCGAGCGAGGAGCCCAAGAGAGAGCGCGCAGCACGAAGCUCGAGCCGCCUCCGCCGCGCGACCCCACCUCGGCCGCCGCCGCCUGCGCCGCGAGAUCCGCCCCGGCCUCCCCGAGAGCGAGCCCCGGCCGCCGCGACCACCAGCCGCGCUAACCGCCGACCAACCGCCACCGAGGCGCCUGAGCGAGAGCAGAGGAGGAGGAGGCAUGAGUGAGGCGGGCGAGGCCACCACCACCACCACCACCACCCUCCCGCAGGCUCCGACGGAGGCGGCCGCCGCGGCUCCCCAGGACCCCGCGCCCAAGAGCCCGGUGGGCAGCGGUGCGCCCCAGGCCGCGGCCCCGGCGCCCGCCGCCCACGUCGCAGGAAACCCCGGUGGGGACGCGGCCCCCGCAGCCACGGGCACCGCGGCCGCCGCCUCU2000000009UUAGCCACCGCCGCCGGCAGCGAAGACGCGGAGAAAAAAGUUCUCGCCACCAAAGUCCUUGGCACUGUCAAAUGGUUCAACGUCAGAAAUGGAUAUGGAUUUAUAAAUCGAAAUGACACCAAAGAAGAUGUAUUUGUACAUCAGACUGCCAUCAAGAAGAAUAACCCACGGAAAUAUCUGCGCAGUGUAGGAGAUGGAGAAACUGUAGAGUUUGAUGUGGUUGAAGGAGAGAAGGGUGCAGAAGCUGCCAAUGUGACUGGCCCGGAUGGAGUUCCUGUGGAAGGGAGUCGUUACGCUGCAGAUCGGCGCCGUUAC2000000006AGACGUGGCUACUAUGGAAGGCGCCGUGGCCCUCCCCGGAAUUACGCUGGGGAGGAGGAGGAGGAAGGGAGCGGCAGCAGUGAAGGAU2000000009UUGACCCCCCUGCC2000000006ACUGAUAGGCAGUUCUCUGGGGC2000000090CCGGAAUCAGCUGCGCCGCCCCCAGUAUCGCCCUCAGUACCGGCAGCGGCGGUUCCCGCCUUACCACGUGGGACAGACCUUUGACCGUCGCUCACGGGUCUUACCCCA2000000009UCCCAACAGAAUACAGGCUGGUGAGAUUGGAGAGAUGAAGGAUGGAGUCCCAGAGGGAGCACAACUUCAGGGACCGGUUCAUCGAAAUCCAACUUACCGCCCAAGGUACCGUAGCAGGGGACCUCCUCGCCCACGACCUGCCCCAGCAGUUGGAGAGGCUGAAGAUAAAGAAAAUCAGCAAGCCACCAGUGGUCCAAACCAGCCGUCUGUUCGCCGUGGAUACCGGCGUCCCUAC2000000006AAUUACCGGCGUCGCCCGCGUCCUCCUAACGCUCCUUCACAAGAUGGCAAAGAGGCCAAGGCAGGUGAAGCACCAACUGAGAACCCUGCUCCACCCACCCAGCAGAGCAGUGCUGAGUAACACCAGGCUCCUCAGGCACCUUCACCAUCGGCAGGUGACCUAAAGAAUUAAUGACCAUUCAGAAAUAAAGCAAAAAGCAGGCCACAACCUUAACCAACACCAAAGAAACA2000000009UCCAAGCAAUAAAGUGGAAGACUAACCAAGAUUUGG2000000006ACAUUGGAAUGUUUACUGUUAUUCU2000000009UUAAGAA2000000006ACAACUACAAAAAGAAAAUGUCAACAAAUUUUUCCAGCAAGCUGAGAACCUGGGAAUUCCUGCACGGAAGACAAGAGAGUAGCCUCUCCAGUUUCAGCAACCGCUAGGUUUCUAUUUUUUUUCCUGGUUUUUACUGUUUUGGUAAUAUAUAUAUUGAA2000000006ACAAGAAAUAUUAAUACCACAUGGGGAGA2000000006ACCCCAACCAAAGAAAUCUGAAAUAUAUAGUAAAUGCUUUUUUUUCCGUUUUUGUUCAUUUUGGAUGCUGGUGCUAA2000000006ACCUCCAAGUGUCAUGAUUUAAAAAAAAAAAAAAUUUAUGUCCUUCUUAUUUAUUUCUAGGAUGAGGGGAGGAUAACAUUUUUGCUUUCUUAUGUGACUCUCUUUGAAAAUGUGCAGUAAGAAAUUCCUCAAAAAUAAAAUUUUUACCCUUCAGAGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	429	744	832	846	869	977	1212	1442	1478	1503	1510	1668	1697	1774
Modification Positions	Y	m6A	Y	m6A	Cm	Y	m6A	Y	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	12:10722895:-	12:10713252:-	12:10710068:-	12:10710054:-	12:10710031:-	12:10709923:-	12:10702013:-	12:10699578:-	12:10699542:-	12:10699517:-	12:10699510:-	12:10699352:-	12:10699323:-	12:10699246:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	8cMbzB4aD5Se BkoLW2CBToyL BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8