General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000262053
Gene ID:	ENSG00000123268
Gene Name:	ATF1
Sequence (UNICHARACTER ENCODING)	AGUAGCGGCCCUGACUGCCGAGGAAACGGUAGCUUAGGACAGUUGGCUGUUAAGUGACACUGAUUCUCCCCGCCCCGCCUGACCCCCGAGAAGGAGGCUUGUCCCCCGCUGCGUGAGGGGGUGGGGAAGUGGGUAGUGAAUUCGGAUCUACCUGGGAGGGGGGAGUGGAAGUUCCCGCCCCGGAGAGCGGCGAGGCGGCAGCCACAGUUGAUUAUGGAAGAUUCCCACAAGAGUACCACGUCAGAGACAGCACCUCAACCUGGUUCAGCAGUUCAGGGAGCUCACAUUUCUCAUAUUGCUCAACAGGUAUCAUCUPUAUCAGAAAGUGAGGAGUCCCAGGACUCAUCCGACAGCAUAGGCUCCUCACAGAAAGCCCACGGGAUCCUAGCACGGCGCCCAUCUUACЖGAAAAAUUUUGAAAGACUUAUCUUCUGAAGAUACACGGGGCAGAAAAGGAGACGGAGAAAAUUCUGGAGUUUCUGCUGCUGUCACUUCUAUGUCUGUUCCAACUCCCAUCUAUCAGACUAGCAGCGGACAGUACAUUGCCAUUGCCCCAAAUGGAGCCUUACAGUUGGCAAGUCCAGGCACAGAUGGAGUACAGGGACUUCA#ACAUUAACCAUGACAAAUUCAGGCAGUACUCAGCAAGGUACAACUAUUCUUCAGUAUGCACAGACCUCUGAUGGACAGCAGAUACUUGUGCCCAGCAAUCAGGUGGUCGUACAAACUGCAUCAGGAGAUAUGCAAЖCAUAUCAGAUCCGAACUACACCUUCAGCUACUUCUCUGCCACAAACUGUGGUGAUGACAUCUCCUGUGACUCUCACCUCUCAGACAACUAAGACAGAUGACCCCCAAUUGAAAAGAGAAAUAAGGUUAAUGAAAAACAGAGAAGCUGCUCGAGAAUGUCGCAGAAAGAAGAAAGAAUAUGUGAAAUGCCUGGAAAACCGAGUUGCAGUCCUGGAAAAUCAAAAUAAAЖCUCUAAUAGAAGAGUUAAAAЖCUUUGAAGGAUCUPUAUUCCAAUAAAAGUGUUUGAUUCCUAAGAAAGAAAAUAUUUUUGUGGЖCAUGCAUAAAAAUUAAAUGGAUUUCCUAGUGGAGUUUUAUAAAUUAAAAGGUCAAAЖCUGAAGCUUUUUAUUUAGGCUUUUCCAAAUCAAGGAUAAAUAUCUUACGCACGAUAUCUAGUGACAGAGGAGAAAGUGGAAAAUGACCUCAAGGAAGCUACGGGCACAACUGGAAGCUUUGUAGAAAUUAAЖCAUAUUCAAGGAGCAAGAAAUGAЖCUUUCAGCAGUCUAAAUUUUCUAAAUAACCAAUAGUUGCCAAUCUAAAAUGGCAGAGAAGAUGAAAUUUGAUAAЖCUGAAUUUUUUUUAAAAAUCCAUUUACCCUACAGGUUUGCAUUUGUUUGCUGAAAUUUACCUUUUUUUAGUUAUAUAUAU#UGUGUGUGUGUGUGUAAUUUCUGCCAAUAAAUUCUAAAUUACAAAGGUAAGAGAAAACCUAGUACAUUACUAAAUAUAUAAAGUAUAUGUUCUGAUUAUGUAUACUUGUUCUAGUGUCAAGUCUUUUUAAGUGGGUUUUUAAAAGUUUGUUAUUGGACUUGAAUGGAUUUUUGAGACUAGGUUAAUUAUUUUUGAGGUCUUAUCCUAAAAGGCAUCUAAGGUACAUGAAUGGAGUAUGGUGAUUUUAUAACAUUUUUUAUCAGAAUGGAAAAAGAACUGUUUAAAAGUUUGAUACUUUUAAAUAGUUGGUUUUUUUGCUUACUCUGGUAAUGAUUUUCUACAAAUACAUAAUAAAUUGUUUUUUUGAGUCUAUAUUCUGUAUGCAGUUGAAUAUCCAUUACUUAUUCUGCUGUGCUPUAAUAGAAUGGAAUGUUUACAGGCCCUUAAAAUAUUAUUUUUAAAAAACCUUCUGAAGAUACAUACCAAAGUUUUUCCAAGAAGAUUUUAUAAUCAAUUUAAUAAUGUAAGGUUUAUCAGAUUCUAUAAUAGUAUAGUUAUUAAGGCAAUUUUAUGUUAGAGACUAUUUUGUAAUGUAGUGAGUGGUACCUPUAUAAGAAAAGUGACUGCCAAUAUAUUUUUAUAGCUGAUCUPUAUAAAUUCUAAUGUUGAGUUUUUAAUGAUUAUUUUAAAUGUUUAUAUAGUUUAGUAAAAUUUGCAUCUCAAAGUAUCAUUUUUAUAUUAUGGGACGUUUUCAGAUUGGCUAAUAUUUGCAUUGUAAAUUUUGUAUGCAGUUUAUCUAAAAUUCAAAAAUACUGUCAGUACACCAGCGUUUAACAUCUAUAUUCCAAUUUGUAUACAGUUUAAAAUUGUACUGCAAAACUAUUGUGUGCUCUUACACAGUAUGCAUCAUAUUGUUGUCUGUGAAAUUAAAGGACAUUUGAUAGUCUACUGAAUGUAAAAUAUAAUGCUUGGUAUAUGAAUGAUAA
Sequence (SHORT NAMES ENCODING)	AGUAGCGGCCCUGACUGCCGAGGAAACGGUAGCUUAGGACAGUUGGCUGUUAAGUGACACUGAUUCUCCCCGCCCCGCCUGACCCCCGAGAAGGAGGCUUGUCCCCCGCUGCGUGAGGGGGUGGGGAAGUGGGUAGUGAAUUCGGAUCUACCUGGGAGGGGGGAGUGGAAGUUCCCGCCCCGGAGAGCGGCGAGGCGGCAGCCACAGUUGAUUAUGGAAGAUUCCCACAAGAGUACCACGUCAGAGACAGCACCUCAACCUGGUUCAGCAGUUCAGGGAGCUCACAUUUCUCAUAUUGCUCAACAGGUAUCAUCUYUAUCAGAAAGUGAGGAGUCCCAGGACUCAUCCGACAGCAUAGGCUCCUCACAGAAAGCCCACGGGAUCCUAGCACGGCGCCCAUCUUACm6AGAAAAAUUUUGAAAGACUUAUCUUCUGAAGAUACACGGGGCAGAAAAGGAGACGGAGAAAAUUCUGGAGUUUCUGCUGCUGUCACUUCUAUGUCUGUUCCAACUCCCAUCUAUCAGACUAGCAGCGGACAGUACAUUGCCAUUGCCCCAAAUGGAGCCUUACAGUUGGCAAGUCCAGGCACAGAUGGAGUACAGGGACUUCAGmACAUUAACCAUGACAAAUUCAGGCAGUACUCAGCAAGGUACAACUAUUCUUCAGUAUGCACAGACCUCUGAUGGACAGCAGAUACUUGUGCCCAGCAAUCAGGUGGUCGUACAAACUGCAUCAGGAGAUAUGCAAm6ACAUAUCAGAUCCGAACUACACCUUCAGCUACUUCUCUGCCACAAACUGUGGUGAUGACAUCUCCUGUGACUCUCACCUCUCAGACAACUAAGACAGAUGACCCCCAAUUGAAAAGAGAAAUAAGGUUAAUGAAAAACAGAGAAGCUGCUCGAGAAUGUCGCAGAAAGAAGAAAGAAUAUGUGAAAUGCCUGGAAAACCGAGUUGCAGUCCUGGAAAAUCAAAAUAAAm6ACUCUAAUAGAAGAGUUAAAAm6ACUUUGAAGGAUCUYUAUUCCAAUAAAAGUGUUUGAUUCCUAAGAAAGAAAAUAUUUUUGUGGm6ACAUGCAUAAAAAUUAAAUGGAUUUCCUAGUGGAGUUUUAUAAAUUAAAAGGUCAAAm6ACUGAAGCUUUUUAUUUAGGCUUUUCCAAAUCAAGGAUAAAUAUCUUACGCACGAUAUCUAGUGACAGAGGAGAAAGUGGAAAAUGACCUCAAGGAAGCUACGGGCACAACUGGAAGCUUUGUAGAAAUUAAm6ACAUAUUCAAGGAGCAAGAAAUGAm6ACUUUCAGCAGUCUAAAUUUUCUAAAUAACCAAUAGUUGCCAAUCUAAAAUGGCAGAGAAGAUGAAAUUUGAUAAm6ACUGAAUUUUUUUUAAAAAUCCAUUUACCCUACAGGUUUGCAUUUGUUUGCUGAAAUUUACCUUUUUUUAGUUAUAUAUAUGmUGUGUGUGUGUGUGUAAUUUCUGCCAAUAAAUUCUAAAUUACAAAGGUAAGAGAAAACCUAGUACAUUACUAAAUAUAUAAAGUAUAUGUUCUGAUUAUGUAUACUUGUUCUAGUGUCAAGUCUUUUUAAGUGGGUUUUUAAAAGUUUGUUAUUGGACUUGAAUGGAUUUUUGAGACUAGGUUAAUUAUUUUUGAGGUCUUAUCCUAAAAGGCAUCUAAGGUACAUGAAUGGAGUAUGGUGAUUUUAUAACAUUUUUUAUCAGAAUGGAAAAAGAACUGUUUAAAAGUUUGAUACUUUUAAAUAGUUGGUUUUUUUGCUUACUCUGGUAAUGAUUUUCUACAAAUACAUAAUAAAUUGUUUUUUUGAGUCUAUAUUCUGUAUGCAGUUGAAUAUCCAUUACUUAUUCUGCUGUGCUYUAAUAGAAUGGAAUGUUUACAGGCCCUUAAAAUAUUAUUUUUAAAAAACCUUCUGAAGAUACAUACCAAAGUUUUUCCAAGAAGAUUUUAUAAUCAAUUUAAUAAUGUAAGGUUUAUCAGAUUCUAUAAUAGUAUAGUUAUUAAGGCAAUUUUAUGUUAGAGACUAUUUUGUAAUGUAGUGAGUGGUACCUYUAUAAGAAAAGUGACUGCCAAUAUAUUUUUAUAGCUGAUCUYUAUAAAUUCUAAUGUUGAGUUUUUAAUGAUUAUUUUAAAUGUUUAUAUAGUUUAGUAAAAUUUGCAUCUCAAAGUAUCAUUUUUAUAUUAUGGGACGUUUUCAGAUUGGCUAAUAUUUGCAUUGUAAAUUUUGUAUGCAGUUUAUCUAAAAUUCAAAAAUACUGUCAGUACACCAGCGUUUAACAUCUAUAUUCCAAUUUGUAUACAGUUUAAAAUUGUACUGCAAAACUAUUGUGUGCUCUUACACAGUAUGCAUCAUAUUGUUGUCUGUGAAAUUAAAGGACAUUUGAUAGUCUACUGAAUGUAAAAUAUAAUGCUUGGUAUAUGAAUGAUAA
Sequence (MODOMICS CODE ENCODING)	AGUAGCGGCCCUGACUGCCGAGGAAACGGUAGCUUAGGACAGUUGGCUGUUAAGUGACACUGAUUCUCCCCGCCCCGCCUGACCCCCGAGAAGGAGGCUUGUCCCCCGCUGCGUGAGGGGGUGGGGAAGUGGGUAGUGAAUUCGGAUCUACCUGGGAGGGGGGAGUGGAAGUUCCCGCCCCGGAGAGCGGCGAGGCGGCAGCCACAGUUGAUUAUGGAAGAUUCCCACAAGAGUACCACGUCAGAGACAGCACCUCAACCUGGUUCAGCAGUUCAGGGAGCUCACAUUUCUCAUAUUGCUCAACAGGUAUCAUCU2000000009UUAUCAGAAAGUGAGGAGUCCCAGGACUCAUCCGACAGCAUAGGCUCCUCACAGAAAGCCCACGGGAUCCUAGCACGGCGCCCAUCUUAC2000000006AGAAAAAUUUUGAAAGACUUAUCUUCUGAAGAUACACGGGGCAGAAAAGGAGACGGAGAAAAUUCUGGAGUUUCUGCUGCUGUCACUUCUAUGUCUGUUCCAACUCCCAUCUAUCAGACUAGCAGCGGACAGUACAUUGCCAUUGCCCCAAAUGGAGCCUUACAGUUGGCAAGUCCAGGCACAGAUGGAGUACAGGGACUUCA2000000090GACAUUAACCAUGACAAAUUCAGGCAGUACUCAGCAAGGUACAACUAUUCUUCAGUAUGCACAGACCUCUGAUGGACAGCAGAUACUUGUGCCCAGCAAUCAGGUGGUCGUACAAACUGCAUCAGGAGAUAUGCAA2000000006ACAUAUCAGAUCCGAACUACACCUUCAGCUACUUCUCUGCCACAAACUGUGGUGAUGACAUCUCCUGUGACUCUCACCUCUCAGACAACUAAGACAGAUGACCCCCAAUUGAAAAGAGAAAUAAGGUUAAUGAAAAACAGAGAAGCUGCUCGAGAAUGUCGCAGAAAGAAGAAAGAAUAUGUGAAAUGCCUGGAAAACCGAGUUGCAGUCCUGGAAAAUCAAAAUAAA2000000006ACUCUAAUAGAAGAGUUAAAA2000000006ACUUUGAAGGAUCU2000000009UUAUUCCAAUAAAAGUGUUUGAUUCCUAAGAAAGAAAAUAUUUUUGUGG2000000006ACAUGCAUAAAAAUUAAAUGGAUUUCCUAGUGGAGUUUUAUAAAUUAAAAGGUCAAA2000000006ACUGAAGCUUUUUAUUUAGGCUUUUCCAAAUCAAGGAUAAAUAUCUUACGCACGAUAUCUAGUGACAGAGGAGAAAGUGGAAAAUGACCUCAAGGAAGCUACGGGCACAACUGGAAGCUUUGUAGAAAUUAA2000000006ACAUAUUCAAGGAGCAAGAAAUGA2000000006ACUUUCAGCAGUCUAAAUUUUCUAAAUAACCAAUAGUUGCCAAUCUAAAAUGGCAGAGAAGAUGAAAUUUGAUAA2000000006ACUGAAUUUUUUUUAAAAAUCCAUUUACCCUACAGGUUUGCAUUUGUUUGCUGAAAUUUACCUUUUUUUAGUUAUAUAUAU2000000090GUGUGUGUGUGUGUGUAAUUUCUGCCAAUAAAUUCUAAAUUACAAAGGUAAGAGAAAACCUAGUACAUUACUAAAUAUAUAAAGUAUAUGUUCUGAUUAUGUAUACUUGUUCUAGUGUCAAGUCUUUUUAAGUGGGUUUUUAAAAGUUUGUUAUUGGACUUGAAUGGAUUUUUGAGACUAGGUUAAUUAUUUUUGAGGUCUUAUCCUAAAAGGCAUCUAAGGUACAUGAAUGGAGUAUGGUGAUUUUAUAACAUUUUUUAUCAGAAUGGAAAAAGAACUGUUUAAAAGUUUGAUACUUUUAAAUAGUUGGUUUUUUUGCUUACUCUGGUAAUGAUUUUCUACAAAUACAUAAUAAAUUGUUUUUUUGAGUCUAUAUUCUGUAUGCAGUUGAAUAUCCAUUACUUAUUCUGCUGUGCU2000000009UUAAUAGAAUGGAAUGUUUACAGGCCCUUAAAAUAUUAUUUUUAAAAAACCUUCUGAAGAUACAUACCAAAGUUUUUCCAAGAAGAUUUUAUAAUCAAUUUAAUAAUGUAAGGUUUAUCAGAUUCUAUAAUAGUAUAGUUAUUAAGGCAAUUUUAUGUUAGAGACUAUUUUGUAAUGUAGUGAGUGGUACCU2000000009UUAUAAGAAAAGUGACUGCCAAUAUAUUUUUAUAGCUGAUCU2000000009UUAUAAAUUCUAAUGUUGAGUUUUUAAUGAUUAUUUUAAAUGUUUAUAUAGUUUAGUAAAAUUUGCAUCUCAAAGUAUCAUUUUUAUAUUAUGGGACGUUUUCAGAUUGGCUAAUAUUUGCAUUGUAAAUUUUGUAUGCAGUUUAUCUAAAAUUCAAAAAUACUGUCAGUACACCAGCGUUUAACAUCUAUAUUCCAAUUUGUAUACAGUUUAAAAUUGUACUGCAAAACUAUUGUGUGCUCUUACACAGUAUGCAUCAUAUUGUUGUCUGUGAAAUUAAAGGACAUUUGAUAGUCUACUGAAUGUAAAAUAUAAUGCUUGGUAUAUGAAUGAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	316	406	609	745	973	994	1008	1057	1114	1246	1270	1345	1426	1843	2035	2077
Modification Positions	Y	m6A	Gm	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	Gm	Y	Y	Y
Genomic Coordinates	12:50795918:+	12:50796008:+	12:50814077:+	12:50814300:+	12:50819723:+	12:50819744:+	12:50819758:+	12:50819807:+	12:50819864:+	12:50819996:+	12:50820020:+	12:50820095:+	12:50820176:+	12:50820593:+	12:50820785:+	12:50820827:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ Yfn77uLS5tv8	aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	8cMbzB4aD5Se WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	jNkxUQNx8GRd WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 Yfn77uLS5tv8