Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000397196
Gene ID: ENSG00000111186
Gene Name: WNT5B
Sequence (UNICHARACTER ENCODING) AGUCACAGCCACAGUGACCAUUAGCAGGCACCCAGGCCUGUCUUUGGCUCGGAAACGGUGGCCCCCAAUGUAGCCUAGUUUGAACCUAGGAACUGCAGGACCAGAGAGAUUCCACUGGAGCCUGAUGGACGGGUGACAGAGGGAACCCUACUCUGGAAACUGUCAGUCCCAGGGCACUGGGGAGGGCUGAGGCCGACCAUGCCCAGCCUGCUGCUGCUGUUCACGGCUGCUCUGCUGUCCAGCUGGGCUCAGCUUCUGACAGACGCCAACUCCUGGUGGUCAUUAGCUUUGAACCCGGUGCAGAGACCCGAGAUGUUUAUCAUCGGUGCCCAGCCCGUGUGCAGUCAGCUUCCCGGGCUCUCCCCUGGCCAGAGGAAGCUGUGCCAAUUGUACCAGGAGCACAUGGCCUACAUAGGGGAGGGAGCCAAGACUGGCAUCAAGGAAUGCCAGCACCAGUUCCGGCAGCGGCGGUGGAAUUGCAGCACAGCGGACAACGCAUCUGUCUUUGGGAGAGUCAUGCAGAUAGGCAGCCGAGAGACCGCCUUCACCCACGCGGUGAGCGCCGCGGGCGUGGUCAACGCCAUCAGCCGGGCCUGCCGCGAGGGCGAGCUCUCCACCUGCGGCUGCAGCCGGACGGCGCGGCCCAAGGACCUGCCCCGGGЖCUGGCUGUGGGGCGGCUGUGGGGACAACGUGGAGUACGGCUACCGCUUCGCCAAGGAGUUUGUGGAUGCCCGGGAGCGAGAGAAGAACUUUGCCAAAGGAUCAGAGGAGCAGGGCCGGGUGCUCAUGAACCUGCAAAACAACGAGGCCGGUCGCAGGGCUGUGUAUAAGAUGGCAGACGUAGCCUGCAAAUGCCACGGCGUCUCGGGGUCCUGCAGCCUCAAGACCUGCUGGCUGCAGCUGGCCGAGUUCCGCAAGGUCGGGGACCGGCUGAAGGAGAAGUACGACAGCGCGGCCGCCAUGCGCGUCACCCGCAAGGGCCGGCUGGAGCUGGUCAACAGCCGCUUCACCCAGCCCACCCCGGAGGЖCCUGGUCUAUGUGGACCCCAGCCCCGACUACUGCCUGCGCAACGAGAGCACGGGCUCCCUGGGCACGCAGGGCCGCCUCUGCAACAAGACCUCGGAGGGCAUGGAUGGCUGUGAGCUCAUGUGCUGCGGGCGUGGCUACAACCAGUUCAAGAGCGUGCAGGUGGAGCGCUGCCACUGCAAGUUCCACUGGUGCUGCUUCGUCAGGUGUAAGAAGUGCACGGAGAUCGUGGЖCCAGUACAUCUGUAAAUAGCCCGGAGGGCCUGCUCCCGGCCCCCCUGCACUCUGCCUCACAAAGGUCUAUAUUAUAUAAAUCUAUAUAAAUCUAUUUUAUAUUUGUAUAAGUAAAUGGGUGGGUGCUAUACAAUGGAAAGAUGAAAAUGGAAAGGAAGAGCUUAUUUAAGAGЖCGCUGGAGAUCUCUGAGGAGUGGЖCUUUGCUGGUUCUCUCCUCUUGGUGGGUGGGAGACAGGGCUUUUUCUCUCCCUCUGGCGAGGЖCUCUCAGGAUGUAGGGЖCUUGGAAAUAUUUACUGUCUGUCCACCACGGCCUGGAGGAGGGAGGUUGUGGUUGGAUGGAGGAGAUGAUCUUGUCUGGAAGUCUAGAGUCUUUGUUGGUUAGAGGЖCUGCCUGUGAUCCUGGCCACUAGGCCAAGAGGCCCUAUGAAGGUGGCGGGAACUCAGCUUCAACCUCGAUGUCUUCAGGGUCUUGUCCAGAAUGUAGAUGGGUUCCGUAAGAGGCCUGGUGCUCUCUUACUCUUUCAUCCACGUGCACUUGUGCGGCAUCUGCAGUUUACAGGAACGGCUCCUUCCCUAAAAUGAGAAGUCCAAGGUCAUCUCUGGCCCAGUGACCACAGAGAGAUCUGCACCUCCCGGЖCUUCAGGCCUGCCUUUCCAGCGAGAAUUCUUCAUCCUCCACGGUUCACUAGCUCCUACCUGAAGAGGAAAGGGGGCCAUUUGACCUGACAUGUCAGGAAAGCCCUAAЖCUGAAUGUUUGCGCCUGGGCUGCAGAAGCCAGGGUGCAUGACCAGGCUGCGUGGЖCGUUAUACUGUCUUCCCCCACCCCCGGGGAGGGGAAGCUUGAGCUGCUGCUGUCACUCCUCCACCGAGGGAGGCCUCACAAACCACAGGЖCGCUGCAACGGGUCAGGCUGGCGGGCCCGGCGUGCUCAUCAUCUCUGCCCCAGGUGUACGGUUUCUCUCUGACAUUAAAUGCCCUUCAUGGA
Sequence (SHORT NAMES ENCODING) AGUCACAGCCACAGUGACCAUUAGCAGGCACCCAGGCCUGUCUUUGGCUCGGAAACGGUGGCCCCCAAUGUAGCCUAGUUUGAACCUAGGAACUGCAGGACCAGAGAGAUUCCACUGGAGCCUGAUGGACGGGUGACAGAGGGAACCCUACUCUGGAAACUGUCAGUCCCAGGGCACUGGGGAGGGCUGAGGCCGACCAUGCCCAGCCUGCUGCUGCUGUUCACGGCUGCUCUGCUGUCCAGCUGGGCUCAGCUUCUGACAGACGCCAACUCCUGGUGGUCAUUAGCUUUGAACCCGGUGCAGAGACCCGAGAUGUUUAUCAUCGGUGCCCAGCCCGUGUGCAGUCAGCUUCCCGGGCUCUCCCCUGGCCAGAGGAAGCUGUGCCAAUUGUACCAGGAGCACAUGGCCUACAUAGGGGAGGGAGCCAAGACUGGCAUCAAGGAAUGCCAGCACCAGUUCCGGCAGCGGCGGUGGAAUUGCAGCACAGCGGACAACGCAUCUGUCUUUGGGAGAGUCAUGCAGAUAGGCAGCCGAGAGACCGCCUUCACCCACGCGGUGAGCGCCGCGGGCGUGGUCAACGCCAUCAGCCGGGCCUGCCGCGAGGGCGAGCUCUCCACCUGCGGCUGCAGCCGGACGGCGCGGCCCAAGGACCUGCCCCGGGm6ACUGGCUGUGGGGCGGCUGUGGGGACAACGUGGAGUACGGCUACCGCUUCGCCAAGGAGUUUGUGGAUGCCCGGGAGCGAGAGAAGAACUUUGCCAAAGGAUCAGAGGAGCAGGGCCGGGUGCUCAUGAACCUGCAAAACAACGAGGCCGGUCGCAGGGCUGUGUAUAAGAUGGCAGACGUAGCCUGCAAAUGCCACGGCGUCUCGGGGUCCUGCAGCCUCAAGACCUGCUGGCUGCAGCUGGCCGAGUUCCGCAAGGUCGGGGACCGGCUGAAGGAGAAGUACGACAGCGCGGCCGCCAUGCGCGUCACCCGCAAGGGCCGGCUGGAGCUGGUCAACAGCCGCUUCACCCAGCCCACCCCGGAGGm6ACCUGGUCUAUGUGGACCCCAGCCCCGACUACUGCCUGCGCAACGAGAGCACGGGCUCCCUGGGCACGCAGGGCCGCCUCUGCAACAAGACCUCGGAGGGCAUGGAUGGCUGUGAGCUCAUGUGCUGCGGGCGUGGCUACAACCAGUUCAAGAGCGUGCAGGUGGAGCGCUGCCACUGCAAGUUCCACUGGUGCUGCUUCGUCAGGUGUAAGAAGUGCACGGAGAUCGUGGm6ACCAGUACAUCUGUAAAUAGCCCGGAGGGCCUGCUCCCGGCCCCCCUGCACUCUGCCUCACAAAGGUCUAUAUUAUAUAAAUCUAUAUAAAUCUAUUUUAUAUUUGUAUAAGUAAAUGGGUGGGUGCUAUACAAUGGAAAGAUGAAAAUGGAAAGGAAGAGCUUAUUUAAGAGm6ACGCUGGAGAUCUCUGAGGAGUGGm6ACUUUGCUGGUUCUCUCCUCUUGGUGGGUGGGAGACAGGGCUUUUUCUCUCCCUCUGGCGAGGm6ACUCUCAGGAUGUAGGGm6ACUUGGAAAUAUUUACUGUCUGUCCACCACGGCCUGGAGGAGGGAGGUUGUGGUUGGAUGGAGGAGAUGAUCUUGUCUGGAAGUCUAGAGUCUUUGUUGGUUAGAGGm6ACUGCCUGUGAUCCUGGCCACUAGGCCAAGAGGCCCUAUGAAGGUGGCGGGAACUCAGCUUCAACCUCGAUGUCUUCAGGGUCUUGUCCAGAAUGUAGAUGGGUUCCGUAAGAGGCCUGGUGCUCUCUUACUCUUUCAUCCACGUGCACUUGUGCGGCAUCUGCAGUUUACAGGAACGGCUCCUUCCCUAAAAUGAGAAGUCCAAGGUCAUCUCUGGCCCAGUGACCACAGAGAGAUCUGCACCUCCCGGm6ACUUCAGGCCUGCCUUUCCAGCGAGAAUUCUUCAUCCUCCACGGUUCACUAGCUCCUACCUGAAGAGGAAAGGGGGCCAUUUGACCUGACAUGUCAGGAAAGCCCUAAm6ACUGAAUGUUUGCGCCUGGGCUGCAGAAGCCAGGGUGCAUGACCAGGCUGCGUGGm6ACGUUAUACUGUCUUCCCCCACCCCCGGGGAGGGGAAGCUUGAGCUGCUGCUGUCACUCCUCCACCGAGGGAGGCCUCACAAACCACAGGm6ACGCUGCAACGGGUCAGGCUGGCGGGCCCGGCGUGCUCAUCAUCUCUGCCCCAGGUGUACGGUUUCUCUCUGACAUUAAAUGCCCUUCAUGGA
Sequence (MODOMICS CODE ENCODING) AGUCACAGCCACAGUGACCAUUAGCAGGCACCCAGGCCUGUCUUUGGCUCGGAAACGGUGGCCCCCAAUGUAGCCUAGUUUGAACCUAGGAACUGCAGGACCAGAGAGAUUCCACUGGAGCCUGAUGGACGGGUGACAGAGGGAACCCUACUCUGGAAACUGUCAGUCCCAGGGCACUGGGGAGGGCUGAGGCCGACCAUGCCCAGCCUGCUGCUGCUGUUCACGGCUGCUCUGCUGUCCAGCUGGGCUCAGCUUCUGACAGACGCCAACUCCUGGUGGUCAUUAGCUUUGAACCCGGUGCAGAGACCCGAGAUGUUUAUCAUCGGUGCCCAGCCCGUGUGCAGUCAGCUUCCCGGGCUCUCCCCUGGCCAGAGGAAGCUGUGCCAAUUGUACCAGGAGCACAUGGCCUACAUAGGGGAGGGAGCCAAGACUGGCAUCAAGGAAUGCCAGCACCAGUUCCGGCAGCGGCGGUGGAAUUGCAGCACAGCGGACAACGCAUCUGUCUUUGGGAGAGUCAUGCAGAUAGGCAGCCGAGAGACCGCCUUCACCCACGCGGUGAGCGCCGCGGGCGUGGUCAACGCCAUCAGCCGGGCCUGCCGCGAGGGCGAGCUCUCCACCUGCGGCUGCAGCCGGACGGCGCGGCCCAAGGACCUGCCCCGGG2000000006ACUGGCUGUGGGGCGGCUGUGGGGACAACGUGGAGUACGGCUACCGCUUCGCCAAGGAGUUUGUGGAUGCCCGGGAGCGAGAGAAGAACUUUGCCAAAGGAUCAGAGGAGCAGGGCCGGGUGCUCAUGAACCUGCAAAACAACGAGGCCGGUCGCAGGGCUGUGUAUAAGAUGGCAGACGUAGCCUGCAAAUGCCACGGCGUCUCGGGGUCCUGCAGCCUCAAGACCUGCUGGCUGCAGCUGGCCGAGUUCCGCAAGGUCGGGGACCGGCUGAAGGAGAAGUACGACAGCGCGGCCGCCAUGCGCGUCACCCGCAAGGGCCGGCUGGAGCUGGUCAACAGCCGCUUCACCCAGCCCACCCCGGAGG2000000006ACCUGGUCUAUGUGGACCCCAGCCCCGACUACUGCCUGCGCAACGAGAGCACGGGCUCCCUGGGCACGCAGGGCCGCCUCUGCAACAAGACCUCGGAGGGCAUGGAUGGCUGUGAGCUCAUGUGCUGCGGGCGUGGCUACAACCAGUUCAAGAGCGUGCAGGUGGAGCGCUGCCACUGCAAGUUCCACUGGUGCUGCUUCGUCAGGUGUAAGAAGUGCACGGAGAUCGUGG2000000006ACCAGUACAUCUGUAAAUAGCCCGGAGGGCCUGCUCCCGGCCCCCCUGCACUCUGCCUCACAAAGGUCUAUAUUAUAUAAAUCUAUAUAAAUCUAUUUUAUAUUUGUAUAAGUAAAUGGGUGGGUGCUAUACAAUGGAAAGAUGAAAAUGGAAAGGAAGAGCUUAUUUAAGAG2000000006ACGCUGGAGAUCUCUGAGGAGUGG2000000006ACUUUGCUGGUUCUCUCCUCUUGGUGGGUGGGAGACAGGGCUUUUUCUCUCCCUCUGGCGAGG2000000006ACUCUCAGGAUGUAGGG2000000006ACUUGGAAAUAUUUACUGUCUGUCCACCACGGCCUGGAGGAGGGAGGUUGUGGUUGGAUGGAGGAGAUGAUCUUGUCUGGAAGUCUAGAGUCUUUGUUGGUUAGAGG2000000006ACUGCCUGUGAUCCUGGCCACUAGGCCAAGAGGCCCUAUGAAGGUGGCGGGAACUCAGCUUCAACCUCGAUGUCUUCAGGGUCUUGUCCAGAAUGUAGAUGGGUUCCGUAAGAGGCCUGGUGCUCUCUUACUCUUUCAUCCACGUGCACUUGUGCGGCAUCUGCAGUUUACAGGAACGGCUCCUUCCCUAAAAUGAGAAGUCCAAGGUCAUCUCUGGCCCAGUGACCACAGAGAGAUCUGCACCUCCCGG2000000006ACUUCAGGCCUGCCUUUCCAGCGAGAAUUCUUCAUCCUCCACGGUUCACUAGCUCCUACCUGAAGAGGAAAGGGGGCCAUUUGACCUGACAUGUCAGGAAAGCCCUAA2000000006ACUGAAUGUUUGCGCCUGGGCUGCAGAAGCCAGGGUGCAUGACCAGGCUGCGUGG2000000006ACGUUAUACUGUCUUCCCCCACCCCCGGGGAGGGGAAGCUUGAGCUGCUGCUGUCACUCCUCCACCGAGGGAGGCCUCACAAACCACAGG2000000006ACGCUGCAACGGGUCAGGCUGGCGGGCCCGGCGUGCUCAUCAUCUCUGCCCCAGGUGUACGGUUUCUCUCUGACAUUAAAUGCCCUUCAUGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 662 1028 1259 1432 1456 1519 1536 1643 1893 2001 2056 2146
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 12:1639819:+ 12:1646002:+ 12:1646233:+ 12:1646406:+ 12:1646430:+ 12:1646493:+ 12:1646510:+ 12:1646617:+ 12:1646867:+ 12:1646975:+ 12:1647030:+ 12:1647120:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
aHkqKEJkRYyb
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
msuJfBpJvM5H
VyCX26p5UBRL