Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000675868
Gene ID: ENSG00000089127
Gene Name: OAS1
Sequence (UNICHARACTER ENCODING) AGUCCAAGCUCAGUCAGCAGAAGAGAUAAAAGCAAACAGGUCUGGGAGGCAGUUCUGUUGCCACUCUCUCUCCUGUCAAUGAUGGAUCUCAGAAAUACCCCAGCCAAAUCUCUGGACAAGUUCAUUGAAGACUAUCUCUUGCCAGACACGUGUUUCCGCAUGCAAAUCAACCAUGCCAUUGACAUCAUCUGUGGGUUCCUGAAGGAAAGGUGCUUCCGAGGUAGCUCCUACCCUGUGUGUGUGUCCAAGGUGGUAAAGGGUGGCUCCUCAGGCAAGGGCACCACCCUCAGAGGCCGAUCUGACGCUGACCUGGUUGUCUUCCUCAGUCCUCUCACCACUUUUCAGGAUCAGUUAAAUCGCCGGGGAGAGUUCAPCCAGGAAAUUAGGAGACAGCUGGAAGCCUGUCAAAGAGAGAGAGCAUUUUCCGUGAAGUUUGAGGUCCAGGCUCCACGCUGGGGCAACCCCCGUGCGCUCAGCUUCGUACUGAGUUCGCUCCAGCUCGGGGAGGGGGUGGAGUUCGAUGUGCUGCCUGCCUUUGAUGCCCUGGCUCAUCGAGGAGUGCACCGACCUGCAGAAAGAGGGCGAGUUCUCCACCUGCUUCACAGAACUACAGAGAGACUUCCUGAAGCAGCGCCCCACCAAGCUCAAGAGCCUCAPCCGCCUAGUCAAGCACUGGUACCAAAAUGUAUGGCCCUCCCACCAGGCCUGUGUAAGAAGAAGCUUGGGAAGCUGCCACCUCAGUAUGCCCUGGAGCUCCUGACGGUCUAUGCUUGGGAGCGAGGGAGCAUGAAAACACAUUUCAACACAGCCCAGGGAUUUCGGACGGUCUUGGAAUUAGUCAUAAACUACCAGCAACUCUGCAUCUACUGGACAAAGUAUUAUGACUUUAAAAACCCCAUUAUUGAAAAGUACCUGAGAAGGCAGCUCACGAAACCCAGGCCUGUGAUCCUGGACCCGGCGGACCCUACAGGAAACUUGGGUGGUGGAGACCCAAAGGGUUGGAGGCAGCUGGCACAAGAGGCUGAGGCCUGGCUGAAUUACCCAUGCUPUAAGAAUUGGGAUGGGUCCCCAGUGAGCUCCUGGAUUCUGCUGGUGAGACCUCCUGCUUCCUCCCUGCCAUUCAPCCCUGCCCCUCUCCAUGAAGCUUGAGACAUAUAGCUGGAGACCAUUCUUUCCAAAGAЖCUUACCUCUUGCCAAAGGCCAUUUAUAUUCAUAUAGUGACAGGCUGUGCUCCAUAUUUUACAGUCAUUUUGGUCACAAUCGAGGGUUUCUGGAAUUUUCACAPCCCUUGUCCAGAAUUCAUUCCCCUAAGAGUAAUAAUAAAUAAUCUCUAACACCAU
Sequence (SHORT NAMES ENCODING) AGUCCAAGCUCAGUCAGCAGAAGAGAUAAAAGCAAACAGGUCUGGGAGGCAGUUCUGUUGCCACUCUCUCUCCUGUCAAUGAUGGAUCUCAGAAAUACCCCAGCCAAAUCUCUGGACAAGUUCAUUGAAGACUAUCUCUUGCCAGACACGUGUUUCCGCAUGCAAAUCAACCAUGCCAUUGACAUCAUCUGUGGGUUCCUGAAGGAAAGGUGCUUCCGAGGUAGCUCCUACCCUGUGUGUGUGUCCAAGGUGGUAAAGGGUGGCUCCUCAGGCAAGGGCACCACCCUCAGAGGCCGAUCUGACGCUGACCUGGUUGUCUUCCUCAGUCCUCUCACCACUUUUCAGGAUCAGUUAAAUCGCCGGGGAGAGUUCAYCCAGGAAAUUAGGAGACAGCUGGAAGCCUGUCAAAGAGAGAGAGCAUUUUCCGUGAAGUUUGAGGUCCAGGCUCCACGCUGGGGCAACCCCCGUGCGCUCAGCUUCGUACUGAGUUCGCUCCAGCUCGGGGAGGGGGUGGAGUUCGAUGUGCUGCCUGCCUUUGAUGCCCUGGCUCAUCGAGGAGUGCACCGACCUGCAGAAAGAGGGCGAGUUCUCCACCUGCUUCACAGAACUACAGAGAGACUUCCUGAAGCAGCGCCCCACCAAGCUCAAGAGCCUCAYCCGCCUAGUCAAGCACUGGUACCAAAAUGUAUGGCCCUCCCACCAGGCCUGUGUAAGAAGAAGCUUGGGAAGCUGCCACCUCAGUAUGCCCUGGAGCUCCUGACGGUCUAUGCUUGGGAGCGAGGGAGCAUGAAAACACAUUUCAACACAGCCCAGGGAUUUCGGACGGUCUUGGAAUUAGUCAUAAACUACCAGCAACUCUGCAUCUACUGGACAAAGUAUUAUGACUUUAAAAACCCCAUUAUUGAAAAGUACCUGAGAAGGCAGCUCACGAAACCCAGGCCUGUGAUCCUGGACCCGGCGGACCCUACAGGAAACUUGGGUGGUGGAGACCCAAAGGGUUGGAGGCAGCUGGCACAAGAGGCUGAGGCCUGGCUGAAUUACCCAUGCUYUAAGAAUUGGGAUGGGUCCCCAGUGAGCUCCUGGAUUCUGCUGGUGAGACCUCCUGCUUCCUCCCUGCCAUUCAYCCCUGCCCCUCUCCAUGAAGCUUGAGACAUAUAGCUGGAGACCAUUCUUUCCAAAGAm6ACUUACCUCUUGCCAAAGGCCAUUUAUAUUCAUAUAGUGACAGGCUGUGCUCCAUAUUUUACAGUCAUUUUGGUCACAAUCGAGGGUUUCUGGAAUUUUCACAYCCCUUGUCCAGAAUUCAUUCCCCUAAGAGUAAUAAUAAAUAAUCUCUAACACCAU
Sequence (MODOMICS CODE ENCODING) AGUCCAAGCUCAGUCAGCAGAAGAGAUAAAAGCAAACAGGUCUGGGAGGCAGUUCUGUUGCCACUCUCUCUCCUGUCAAUGAUGGAUCUCAGAAAUACCCCAGCCAAAUCUCUGGACAAGUUCAUUGAAGACUAUCUCUUGCCAGACACGUGUUUCCGCAUGCAAAUCAACCAUGCCAUUGACAUCAUCUGUGGGUUCCUGAAGGAAAGGUGCUUCCGAGGUAGCUCCUACCCUGUGUGUGUGUCCAAGGUGGUAAAGGGUGGCUCCUCAGGCAAGGGCACCACCCUCAGAGGCCGAUCUGACGCUGACCUGGUUGUCUUCCUCAGUCCUCUCACCACUUUUCAGGAUCAGUUAAAUCGCCGGGGAGAGUUCA2000000009UCCAGGAAAUUAGGAGACAGCUGGAAGCCUGUCAAAGAGAGAGAGCAUUUUCCGUGAAGUUUGAGGUCCAGGCUCCACGCUGGGGCAACCCCCGUGCGCUCAGCUUCGUACUGAGUUCGCUCCAGCUCGGGGAGGGGGUGGAGUUCGAUGUGCUGCCUGCCUUUGAUGCCCUGGCUCAUCGAGGAGUGCACCGACCUGCAGAAAGAGGGCGAGUUCUCCACCUGCUUCACAGAACUACAGAGAGACUUCCUGAAGCAGCGCCCCACCAAGCUCAAGAGCCUCA2000000009UCCGCCUAGUCAAGCACUGGUACCAAAAUGUAUGGCCCUCCCACCAGGCCUGUGUAAGAAGAAGCUUGGGAAGCUGCCACCUCAGUAUGCCCUGGAGCUCCUGACGGUCUAUGCUUGGGAGCGAGGGAGCAUGAAAACACAUUUCAACACAGCCCAGGGAUUUCGGACGGUCUUGGAAUUAGUCAUAAACUACCAGCAACUCUGCAUCUACUGGACAAAGUAUUAUGACUUUAAAAACCCCAUUAUUGAAAAGUACCUGAGAAGGCAGCUCACGAAACCCAGGCCUGUGAUCCUGGACCCGGCGGACCCUACAGGAAACUUGGGUGGUGGAGACCCAAAGGGUUGGAGGCAGCUGGCACAAGAGGCUGAGGCCUGGCUGAAUUACCCAUGCU2000000009UUAAGAAUUGGGAUGGGUCCCCAGUGAGCUCCUGGAUUCUGCUGGUGAGACCUCCUGCUUCCUCCCUGCCAUUCA2000000009UCCCUGCCCCUCUCCAUGAAGCUUGAGACAUAUAGCUGGAGACCAUUCUUUCCAAAGA2000000006ACUUACCUCUUGCCAAAGGCCAUUUAUAUUCAUAUAGUGACAGGCUGUGCUCCAUAUUUUACAGUCAUUUUGGUCACAAUCGAGGGUUUCUGGAAUUUUCACA2000000009UCCCUUGUCCAGAAUUCAUUCCCCUAAGAGUAAUAAUAAAUAAUCUCUAACACCAU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 374 657 1049 1124 1182 1285
Modification Positions Y Y Y Y m6A Y
Genomic Coordinates 12:112908651:+ 12:112911207:+ 12:112917657:+ 12:112917732:+ 12:112917790:+ 12:112917893:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
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UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
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bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr