General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000256151
Gene ID:	ENSG00000133773
Gene Name:	CCDC59
Sequence (UNICHARACTER ENCODING)	AGUCGGCUGCAAUGGCGCCGGUGAGGCGGUCCGCGAAGUGGCGGCCUGGUGGUAUUGAGGCGCGUGGUGAAGGGGUUUCCACUGUCGGGUACAGGAAUAAGAAUGUGAGACAGAAGACAUGGCGGCCUAЖCCACCCGCAAGCCUUCGUGGGGAGCGUUCGCGAGGGACAAGGCUUUGCUUUUCGAAGAAAACUGAAAAUACAGCAAAGUUACAAGAAAUUGCUACGGAAGGAAAAGAAGGCUCAAACGUCACUGGAAUCUCAAUUCACAGAUCGAUACCCAGAUAAUCUGAAACAUCUCUAUUUAGCUGAAGAGGAAAGACAUAGGAAGCAAGCAAGAAAAGUCGACCAPCCUUUGUCAGAACAAGUUCACCAGCCGUUGCUUGAAGAACAGUGUAGCAUUGACGAGCCUPUAUUUGAAGAUCAGUGUAGCUUUGACCAGCCUCAGCCAGAAGAACAAUGUAUUAAAACAGUAAACUCCUPUACAAUUCCAAAGAAAAAUAAAAAGAAAACAUCAAAUCAAAAAGCACAAGAAGAAUAUGAACAGAUACAAGCCAAACGUGCUGCUAAGAAACAAGAAUUCGAGAGGAGAAAACAGGAGAGAGAAGAAGCCCAAAGGCAGUACAAAAAGAAGAAAAUGGAAGUGUUUAAAAUACUGAACAAAAAGЖCUAAAAAGGGCCAACCAAACUUGAAUGUACAAAUGGAGUACCUUCUUCAAAAAAUACAAGAAAAAUGUUAAЖCAUUUUGUUCCUACAGGUUAAAAUAUCUGCUGCCUAUUAGGUUCUUCUGUGACAUGUGCCUCCCAGCAGUGAACUAAAUUUGUCGACAUAAЖCUGGAUUGCUAAACUAUGCUAAAUAUAAGAUGUUCACAUAUUUUUAUUAUGGUAAAAAAUUUUCUAAAUAUGUUCUACAUGUUUCUUAUUUAUUUGCCUCUGAAGGAAGGUUGGCCUGAAGAЖCUGAAAGAACCUCUUAUUUUGCAAGACAGGCCCAAGCAUGUAAUACUUUUGUACCAUAUGAGAUUUAUAUGAAAUAAAUUUUUUAAAAAUAAGGAAUCAGAGCUAUCAAUGAAGCAUUUCAAUGAAAUAUUUCAAUUUAGUAAACAGUUACGUUGUUUUAAAAUUUAUUUUAAUGAUGAGGGAGGCAAAGACUCCUCUUGGACUUUUUAUUUAUUUUAAGUACAUGUUACAGGGUGAUGGGUGCUGAAAUAAACUGCCCUCACCAUAUAACAAAGCGACCUUCACAAAGCAGUGAACUCAAAGUCUGAUAUUUAUAAACAUUCCCUUAAAUGGAUGUACAUGGCUUGUUAGUCUAAGGUCUUUUAAAUAAUGAUGGAAACCCCACAGUGUCACAGCAAGAAUUAAGCUUUCCAGUUCCUAUGGACCCUAUACUUUAAGAACAUUAUCUCUGUCUCCCUUGUUGGUACCCUUGUGAGCUGAGAUAAGCCACUGGGAUAACUGCUUCUCAUGCUUUGCAAAUUGCAGAAGAAUGAGAAAGGCUUGAAAUAUAUAUAUAGUCAUUGUAAGCAAAAAGGGCUGACCAAUAAUACUUGCCAAAUAUUGAAUAAUAAAAUUUUAUAAAUGAUAGCAAA
Sequence (SHORT NAMES ENCODING)	AGUCGGCUGCAAUGGCGCCGGUGAGGCGGUCCGCGAAGUGGCGGCCUGGUGGUAUUGAGGCGCGUGGUGAAGGGGUUUCCACUGUCGGGUACAGGAAUAAGAAUGUGAGACAGAAGACAUGGCGGCCUAm6ACCACCCGCAAGCCUUCGUGGGGAGCGUUCGCGAGGGACAAGGCUUUGCUUUUCGAAGAAAACUGAAAAUACAGCAAAGUUACAAGAAAUUGCUACGGAAGGAAAAGAAGGCUCAAACGUCACUGGAAUCUCAAUUCACAGAUCGAUACCCAGAUAAUCUGAAACAUCUCUAUUUAGCUGAAGAGGAAAGACAUAGGAAGCAAGCAAGAAAAGUCGACCAYCCUUUGUCAGAACAAGUUCACCAGCCGUUGCUUGAAGAACAGUGUAGCAUUGACGAGCCUYUAUUUGAAGAUCAGUGUAGCUUUGACCAGCCUCAGCCAGAAGAACAAUGUAUUAAAACAGUAAACUCCUYUACAAUUCCAAAGAAAAAUAAAAAGAAAACAUCAAAUCAAAAAGCACAAGAAGAAUAUGAACAGAUACAAGCCAAACGUGCUGCUAAGAAACAAGAAUUCGAGAGGAGAAAACAGGAGAGAGAAGAAGCCCAAAGGCAGUACAAAAAGAAGAAAAUGGAAGUGUUUAAAAUACUGAACAAAAAGm6ACUAAAAAGGGCCAACCAAACUUGAAUGUACAAAUGGAGUACCUUCUUCAAAAAAUACAAGAAAAAUGUUAAm6ACAUUUUGUUCCUACAGGUUAAAAUAUCUGCUGCCUAUUAGGUUCUUCUGUGACAUGUGCCUCCCAGCAGUGAACUAAAUUUGUCGACAUAAm6ACUGGAUUGCUAAACUAUGCUAAAUAUAAGAUGUUCACAUAUUUUUAUUAUGGUAAAAAAUUUUCUAAAUAUGUUCUACAUGUUUCUUAUUUAUUUGCCUCUGAAGGAAGGUUGGCCUGAAGAm6ACUGAAAGAACCUCUUAUUUUGCAAGACAGGCCCAAGCAUGUAAUACUUUUGUACCAUAUGAGAUUUAUAUGAAAUAAAUUUUUUAAAAAUAAGGAAUCAGAGCUAUCAAUGAAGCAUUUCAAUGAAAUAUUUCAAUUUAGUAAACAGUUACGUUGUUUUAAAAUUUAUUUUAAUGAUGAGGGAGGCAAAGACUCCUCUUGGACUUUUUAUUUAUUUUAAGUACAUGUUACAGGGUGAUGGGUGCUGAAAUAAACUGCCCUCACCAUAUAACAAAGCGACCUUCACAAAGCAGUGAACUCAAAGUCUGAUAUUUAUAAACAUUCCCUUAAAUGGAUGUACAUGGCUUGUUAGUCUAAGGUCUUUUAAAUAAUGAUGGAAACCCCACAGUGUCACAGCAAGAAUUAAGCUUUCCAGUUCCUAUGGACCCUAUACUUUAAGAACAUUAUCUCUGUCUCCCUUGUUGGUACCCUUGUGAGCUGAGAUAAGCCACUGGGAUAACUGCUUCUCAUGCUUUGCAAAUUGCAGAAGAAUGAGAAAGGCUUGAAAUAUAUAUAUAGUCAUUGUAAGCAAAAAGGGCUGACCAAUAAUACUUGCCAAAUAUUGAAUAAUAAAAUUUUAUAAAUGAUAGCAAA
Sequence (MODOMICS CODE ENCODING)	AGUCGGCUGCAAUGGCGCCGGUGAGGCGGUCCGCGAAGUGGCGGCCUGGUGGUAUUGAGGCGCGUGGUGAAGGGGUUUCCACUGUCGGGUACAGGAAUAAGAAUGUGAGACAGAAGACAUGGCGGCCUA2000000006ACCACCCGCAAGCCUUCGUGGGGAGCGUUCGCGAGGGACAAGGCUUUGCUUUUCGAAGAAAACUGAAAAUACAGCAAAGUUACAAGAAAUUGCUACGGAAGGAAAAGAAGGCUCAAACGUCACUGGAAUCUCAAUUCACAGAUCGAUACCCAGAUAAUCUGAAACAUCUCUAUUUAGCUGAAGAGGAAAGACAUAGGAAGCAAGCAAGAAAAGUCGACCA2000000009UCCUUUGUCAGAACAAGUUCACCAGCCGUUGCUUGAAGAACAGUGUAGCAUUGACGAGCCU2000000009UUAUUUGAAGAUCAGUGUAGCUUUGACCAGCCUCAGCCAGAAGAACAAUGUAUUAAAACAGUAAACUCCU2000000009UUACAAUUCCAAAGAAAAAUAAAAAGAAAACAUCAAAUCAAAAAGCACAAGAAGAAUAUGAACAGAUACAAGCCAAACGUGCUGCUAAGAAACAAGAAUUCGAGAGGAGAAAACAGGAGAGAGAAGAAGCCCAAAGGCAGUACAAAAAGAAGAAAAUGGAAGUGUUUAAAAUACUGAACAAAAAG2000000006ACUAAAAAGGGCCAACCAAACUUGAAUGUACAAAUGGAGUACCUUCUUCAAAAAAUACAAGAAAAAUGUUAA2000000006ACAUUUUGUUCCUACAGGUUAAAAUAUCUGCUGCCUAUUAGGUUCUUCUGUGACAUGUGCCUCCCAGCAGUGAACUAAAUUUGUCGACAUAA2000000006ACUGGAUUGCUAAACUAUGCUAAAUAUAAGAUGUUCACAUAUUUUUAUUAUGGUAAAAAAUUUUCUAAAUAUGUUCUACAUGUUUCUUAUUUAUUUGCCUCUGAAGGAAGGUUGGCCUGAAGA2000000006ACUGAAAGAACCUCUUAUUUUGCAAGACAGGCCCAAGCAUGUAAUACUUUUGUACCAUAUGAGAUUUAUAUGAAAUAAAUUUUUUAAAAAUAAGGAAUCAGAGCUAUCAAUGAAGCAUUUCAAUGAAAUAUUUCAAUUUAGUAAACAGUUACGUUGUUUUAAAAUUUAUUUUAAUGAUGAGGGAGGCAAAGACUCCUCUUGGACUUUUUAUUUAUUUUAAGUACAUGUUACAGGGUGAUGGGUGCUGAAAUAAACUGCCCUCACCAUAUAACAAAGCGACCUUCACAAAGCAGUGAACUCAAAGUCUGAUAUUUAUAAACAUUCCCUUAAAUGGAUGUACAUGGCUUGUUAGUCUAAGGUCUUUUAAAUAAUGAUGGAAACCCCACAGUGUCACAGCAAGAAUUAAGCUUUCCAGUUCCUAUGGACCCUAUACUUUAAGAACAUUAUCUCUGUCUCCCUUGUUGGUACCCUUGUGAGCUGAGAUAAGCCACUGGGAUAACUGCUUCUCAUGCUUUGCAAAUUGCAGAAGAAUGAGAAAGGCUUGAAAUAUAUAUAUAGUCAUUGUAAGCAAAAAGGGCUGACCAAUAAUACUUGCCAAAUAUUGAAUAAUAAAAUUUUAUAAAUGAUAGCAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	130	350	411	481	666	738	830	953
Modification Positions	m6A	Y	Y	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	12:82358258:-	12:82357085:-	12:82357024:-	12:82354589:-	12:82353222:-	12:82353150:-	12:82353058:-	12:82352935:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB dA7YoLwHrzgR JASnTTw2HeNE BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	6UuHp6YApVKv aivdrAsbdKEU jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8