Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000229395
Gene ID: ENSG00000111790
Gene Name: FGFR1OP2
Sequence (UNICHARACTER ENCODING) AGUUCUCCGGGAGCGCCGGUCGGAGGCGGUCGGCGGAGGUGUCUACCCCGCCGGUGAUGGCGUUGAACGCCACUGGCUUCCCGGCCUUCCGUCCGCUGCCUCCGUCCGAUUCUGCGUCUGCUUGCUGAGGAGGCGGAUUAGGGGGGCGCGGAGUCUCUUCCCUUGAGUGCAUAGGUCCCGGUUGGUAGAGGGUUUGAGUCCGCAUCGCCACAGCUGAAGGCUGCGAGGGACUAAGAGCAGAAUAUAUCUPUAGAAAUGAGUUGCACAAUUGAGAAGGCACUUGCCGACGCUAAAGCUCUUGUUGAAAGAUUAAGAGAUCAUGACGAUGCAGCAGAAUCUCUGAUUGAGCAAACCACAGCUCUCAACAAGCGAGUAGAAGCCAUGAAACAGUAUCAGGAAGAAAUUCAAGAACUUAAUGAAGUCGCGAGACAUCGGCCACGGUCCACGUUAGUUAUGGGAAUCCAGCAAGAAAACAGACAAAUCAGAGAGUUGCAACAAGAAAACAAAGAAUUACGUACAUCUCUGGAAGAACAUCAGUCGGCCUUGGAACUUAUAAUGAGCAAGUACCGAGAACAAAUGUUUAGAUUGCUAAUGGCUAGCAAAAAAGAUGAUCCGGGUAUAAUAAUGAAGUUAAAAGAGCAGCACUCCAAGAUUGACAUGGUACAUCGUAACAAGUCCGAAGGAUUCUUCCUUGAUGCAUCUCGACACAPCCUUGAAGCACCUCAACAUGGACUGGAGAGAAGGCACUUGGAAGCAAAUCAGAAUGAACUGCAAGCACAUGUUGACCAGAUAACUGAAAUGGCAGCAGUAAUGAGGAAAGCCAUUGAAAUUGACGAGCAACAGGGUUGCAAGGAACAAGAACGAAUAUUUCAACUUGAACAAGAAAACAAAGGCUUGAGAGAGAUCCUUCAAAUAACUCGAGAAUCAUUUUUGAACCUAAGGAAAGAUGAUGCGUCGGAAAGUACUUCUUUGUCAGCAUUAGUGACCAACAGUGAUUUGAGUCUGAGGAAGAGCUGAAGAGUUUCUGAGUCUGUGAGCUUCUUACAUGGCUCCAAAUGGUCAAAUAAGUGAAUGAAUGAAUGGЖCAGAAAAUUCAAUCCUUUAUUUUUUUCUCUGUAAAUAUGUACAGUGCACGGGCUAUGAGAUAGCAACAAAAAAUGCAUAGUUAAUGGUCAUAGЖCUPUAUUCCAAAACAUAAUUGGAAAAUAGAAACUGAGCCAUUGCCAAAUGGUAAAGAAAUGAAAAGUUUUCACAGUGACUACUGAAUAUACCAAGAGCUUUUGGCAGUACUGCUGGCUUUCUGGGUGAUUAAUUAGGUAAACUUGAAUAUUCCCAGUAAAUGUUUGAGAAUGCAUAAAAUUAUACCAAUUUAAAAAUAUAAAUUUUUGCCACUGUUUUGUGAACGGAGGAUUUGUACGCUAAAUUUCAPCCUUAUUUGGCGUCAAAGUUGAUGCAAAGUUUAUGUACCAUGAGACUUCUAGUGAUUGCCUACUUUCACAUUUAUUUAAAUUUUUGUGAAAGAAAAUACAGUUUUAAAGGCUAUAGGAAUGUGUUAUAUGUACCUUAAACAGAUAAUUUAAUUUUAGCAAUUUAUCAUAACUGAUACUUAGCUAACAAUUGUCCAUAACUUGUUUAAGUGUAAGAAAUACCAUUUCAGGAAUGAAAAAGAAGGAAUACUACUUUCUAAGAAAGAAGAUCUUAUAAUAGACAUAUUUAGUAGGUUAAACUACUCCUUUGAAAGAAUAAGUUUUGGUUCAAAGUCAAUAAUGAAGACGAGAUUUGUUUUUCUCUUCUCUGGCUGAUUUUUAAGGAUAUUAUGUAGUUCAUUUAGUUAACAGAAUUGAAAUGUUUGAUAUGGCAAGAUAGGUAUGGUAAUUUCAAAGUGAAUUGGGAAUUCCUCUGGCUCAUAGAACCCUUUUUUUUUUCCUPUAAGUAUUCUUGAGAUACAAAAAAAAAAAGUAAAUACAAUUUCAAAAAAAAAGUUCCGGAUCUGUUUUUAAGCUCCAUCUGGUCCUCAUAACCUGCAAGAUUUUUCUUAAAACCUUUCAGCUGAAAGUGGGGGUAAAGGUGGAGUAAUCUGUGGAUUUGUUUCUGUUGUCUUUUAAAAUGUCAAAUAUAUAAUAUGUAAUUUUUUUAAAAACCACCAGAUACAGAAAUGUGCUPUAЖCAUCAGUUGAAACCUAAAUUUUCUUAUGUUGUGGUGAUUGUAUUAAAAAGGGAUAAAAGAAGAGUGUCAAACAUGGUUAAAUAUAUUGUACUCAUUUAUGUUGAAUACGUAUUAAAAUUAAGACAAAUGGAAAAUUAUACUUUGAGUAUAUAAUUUGUUAAAUAUUACUPUAUAUGGUAAUUUUAUGUAUAAUUUCAUAUAUUGGUAAAAUUCAAAACUACACUUGAGAAUUUUUUUAUCUUAAGUUUGGGGUGAAUGGGGUGGAUGAGACUGAUUGAAUAGAAAAGGGCUAAUGGCCCAAACAUUAUAUAGAUUUCUUUUUUUCAGUCAGAGGCCUUAUUUGAUAUUUUAUAAAUAAAUGACAGUUUUUAUUUUUAAACUUUUUAUUGUUUUUGGGAAAGUAUUCCUUAAUUUAAUGACACAUUCAUUCAGAUACUUCUUAUCCCUGCUAAUAAAGGAAAUCUAUUUCAAGCUACACCAUUGAGAUUAAGUCUGAGGCAGUUCAUUGAGGCAGCUCUACUAUAAAAGCUUACUUGAUAAAUAAUUAUUUUUGUAAЖCAAGUUGGGUUAЖCUUAUUCUUCGUCUUUUUGCUUGGAUAUGAAUUUAAGGUCUUCAUGUUUAAAGACAUUUACUUUGUUAUUUAGUGACACAUUUCCAUCCUAUUUUUUUUUUUUUUUUGGUUGUUGUUAAЖCAGAACCUUAAGUUUAUGUUUGAGGUAUGUACUGCAUAGGAACCUAUUUUAUUAUUAAAGAUGAAUGAUUAAAAUUGG
Sequence (SHORT NAMES ENCODING) AGUUCUCCGGGAGCGCCGGUCGGAGGCGGUCGGCGGAGGUGUCUACCCCGCCGGUGAUGGCGUUGAACGCCACUGGCUUCCCGGCCUUCCGUCCGCUGCCUCCGUCCGAUUCUGCGUCUGCUUGCUGAGGAGGCGGAUUAGGGGGGCGCGGAGUCUCUUCCCUUGAGUGCAUAGGUCCCGGUUGGUAGAGGGUUUGAGUCCGCAUCGCCACAGCUGAAGGCUGCGAGGGACUAAGAGCAGAAUAUAUCUYUAGAAAUGAGUUGCACAAUUGAGAAGGCACUUGCCGACGCUAAAGCUCUUGUUGAAAGAUUAAGAGAUCAUGACGAUGCAGCAGAAUCUCUGAUUGAGCAAACCACAGCUCUCAACAAGCGAGUAGAAGCCAUGAAACAGUAUCAGGAAGAAAUUCAAGAACUUAAUGAAGUCGCGAGACAUCGGCCACGGUCCACGUUAGUUAUGGGAAUCCAGCAAGAAAACAGACAAAUCAGAGAGUUGCAACAAGAAAACAAAGAAUUACGUACAUCUCUGGAAGAACAUCAGUCGGCCUUGGAACUUAUAAUGAGCAAGUACCGAGAACAAAUGUUUAGAUUGCUAAUGGCUAGCAAAAAAGAUGAUCCGGGUAUAAUAAUGAAGUUAAAAGAGCAGCACUCCAAGAUUGACAUGGUACAUCGUAACAAGUCCGAAGGAUUCUUCCUUGAUGCAUCUCGACACAYCCUUGAAGCACCUCAACAUGGACUGGAGAGAAGGCACUUGGAAGCAAAUCAGAAUGAACUGCAAGCACAUGUUGACCAGAUAACUGAAAUGGCAGCAGUAAUGAGGAAAGCCAUUGAAAUUGACGAGCAACAGGGUUGCAAGGAACAAGAACGAAUAUUUCAACUUGAACAAGAAAACAAAGGCUUGAGAGAGAUCCUUCAAAUAACUCGAGAAUCAUUUUUGAACCUAAGGAAAGAUGAUGCGUCGGAAAGUACUUCUUUGUCAGCAUUAGUGACCAACAGUGAUUUGAGUCUGAGGAAGAGCUGAAGAGUUUCUGAGUCUGUGAGCUUCUUACAUGGCUCCAAAUGGUCAAAUAAGUGAAUGAAUGAAUGGm6ACAGAAAAUUCAAUCCUUUAUUUUUUUCUCUGUAAAUAUGUACAGUGCACGGGCUAUGAGAUAGCAACAAAAAAUGCAUAGUUAAUGGUCAUAGm6ACUYUAUUCCAAAACAUAAUUGGAAAAUAGAAACUGAGCCAUUGCCAAAUGGUAAAGAAAUGAAAAGUUUUCACAGUGACUACUGAAUAUACCAAGAGCUUUUGGCAGUACUGCUGGCUUUCUGGGUGAUUAAUUAGGUAAACUUGAAUAUUCCCAGUAAAUGUUUGAGAAUGCAUAAAAUUAUACCAAUUUAAAAAUAUAAAUUUUUGCCACUGUUUUGUGAACGGAGGAUUUGUACGCUAAAUUUCAYCCUUAUUUGGCGUCAAAGUUGAUGCAAAGUUUAUGUACCAUGAGACUUCUAGUGAUUGCCUACUUUCACAUUUAUUUAAAUUUUUGUGAAAGAAAAUACAGUUUUAAAGGCUAUAGGAAUGUGUUAUAUGUACCUUAAACAGAUAAUUUAAUUUUAGCAAUUUAUCAUAACUGAUACUUAGCUAACAAUUGUCCAUAACUUGUUUAAGUGUAAGAAAUACCAUUUCAGGAAUGAAAAAGAAGGAAUACUACUUUCUAAGAAAGAAGAUCUUAUAAUAGACAUAUUUAGUAGGUUAAACUACUCCUUUGAAAGAAUAAGUUUUGGUUCAAAGUCAAUAAUGAAGACGAGAUUUGUUUUUCUCUUCUCUGGCUGAUUUUUAAGGAUAUUAUGUAGUUCAUUUAGUUAACAGAAUUGAAAUGUUUGAUAUGGCAAGAUAGGUAUGGUAAUUUCAAAGUGAAUUGGGAAUUCCUCUGGCUCAUAGAACCCUUUUUUUUUUCCUYUAAGUAUUCUUGAGAUACAAAAAAAAAAAGUAAAUACAAUUUCAAAAAAAAAGUUCCGGAUCUGUUUUUAAGCUCCAUCUGGUCCUCAUAACCUGCAAGAUUUUUCUUAAAACCUUUCAGCUGAAAGUGGGGGUAAAGGUGGAGUAAUCUGUGGAUUUGUUUCUGUUGUCUUUUAAAAUGUCAAAUAUAUAAUAUGUAAUUUUUUUAAAAACCACCAGAUACAGAAAUGUGCUYUAm6ACAUCAGUUGAAACCUAAAUUUUCUUAUGUUGUGGUGAUUGUAUUAAAAAGGGAUAAAAGAAGAGUGUCAAACAUGGUUAAAUAUAUUGUACUCAUUUAUGUUGAAUACGUAUUAAAAUUAAGACAAAUGGAAAAUUAUACUUUGAGUAUAUAAUUUGUUAAAUAUUACUYUAUAUGGUAAUUUUAUGUAUAAUUUCAUAUAUUGGUAAAAUUCAAAACUACACUUGAGAAUUUUUUUAUCUUAAGUUUGGGGUGAAUGGGGUGGAUGAGACUGAUUGAAUAGAAAAGGGCUAAUGGCCCAAACAUUAUAUAGAUUUCUUUUUUUCAGUCAGAGGCCUUAUUUGAUAUUUUAUAAAUAAAUGACAGUUUUUAUUUUUAAACUUUUUAUUGUUUUUGGGAAAGUAUUCCUUAAUUUAAUGACACAUUCAUUCAGAUACUUCUUAUCCCUGCUAAUAAAGGAAAUCUAUUUCAAGCUACACCAUUGAGAUUAAGUCUGAGGCAGUUCAUUGAGGCAGCUCUACUAUAAAAGCUUACUUGAUAAAUAAUUAUUUUUGUAAm6ACAAGUUGGGUUAm6ACUUAUUCUUCGUCUUUUUGCUUGGAUAUGAAUUUAAGGUCUUCAUGUUUAAAGACAUUUACUUUGUUAUUUAGUGACACAUUUCCAUCCUAUUUUUUUUUUUUUUUUGGUUGUUGUUAAm6ACAGAACCUUAAGUUUAUGUUUGAGGUAUGUACUGCAUAGGAACCUAUUUUAUUAUUAAAGAUGAAUGAUUAAAAUUGG
Sequence (MODOMICS CODE ENCODING) AGUUCUCCGGGAGCGCCGGUCGGAGGCGGUCGGCGGAGGUGUCUACCCCGCCGGUGAUGGCGUUGAACGCCACUGGCUUCCCGGCCUUCCGUCCGCUGCCUCCGUCCGAUUCUGCGUCUGCUUGCUGAGGAGGCGGAUUAGGGGGGCGCGGAGUCUCUUCCCUUGAGUGCAUAGGUCCCGGUUGGUAGAGGGUUUGAGUCCGCAUCGCCACAGCUGAAGGCUGCGAGGGACUAAGAGCAGAAUAUAUCU2000000009UUAGAAAUGAGUUGCACAAUUGAGAAGGCACUUGCCGACGCUAAAGCUCUUGUUGAAAGAUUAAGAGAUCAUGACGAUGCAGCAGAAUCUCUGAUUGAGCAAACCACAGCUCUCAACAAGCGAGUAGAAGCCAUGAAACAGUAUCAGGAAGAAAUUCAAGAACUUAAUGAAGUCGCGAGACAUCGGCCACGGUCCACGUUAGUUAUGGGAAUCCAGCAAGAAAACAGACAAAUCAGAGAGUUGCAACAAGAAAACAAAGAAUUACGUACAUCUCUGGAAGAACAUCAGUCGGCCUUGGAACUUAUAAUGAGCAAGUACCGAGAACAAAUGUUUAGAUUGCUAAUGGCUAGCAAAAAAGAUGAUCCGGGUAUAAUAAUGAAGUUAAAAGAGCAGCACUCCAAGAUUGACAUGGUACAUCGUAACAAGUCCGAAGGAUUCUUCCUUGAUGCAUCUCGACACA2000000009UCCUUGAAGCACCUCAACAUGGACUGGAGAGAAGGCACUUGGAAGCAAAUCAGAAUGAACUGCAAGCACAUGUUGACCAGAUAACUGAAAUGGCAGCAGUAAUGAGGAAAGCCAUUGAAAUUGACGAGCAACAGGGUUGCAAGGAACAAGAACGAAUAUUUCAACUUGAACAAGAAAACAAAGGCUUGAGAGAGAUCCUUCAAAUAACUCGAGAAUCAUUUUUGAACCUAAGGAAAGAUGAUGCGUCGGAAAGUACUUCUUUGUCAGCAUUAGUGACCAACAGUGAUUUGAGUCUGAGGAAGAGCUGAAGAGUUUCUGAGUCUGUGAGCUUCUUACAUGGCUCCAAAUGGUCAAAUAAGUGAAUGAAUGAAUGG2000000006ACAGAAAAUUCAAUCCUUUAUUUUUUUCUCUGUAAAUAUGUACAGUGCACGGGCUAUGAGAUAGCAACAAAAAAUGCAUAGUUAAUGGUCAUAG2000000006ACU2000000009UUAUUCCAAAACAUAAUUGGAAAAUAGAAACUGAGCCAUUGCCAAAUGGUAAAGAAAUGAAAAGUUUUCACAGUGACUACUGAAUAUACCAAGAGCUUUUGGCAGUACUGCUGGCUUUCUGGGUGAUUAAUUAGGUAAACUUGAAUAUUCCCAGUAAAUGUUUGAGAAUGCAUAAAAUUAUACCAAUUUAAAAAUAUAAAUUUUUGCCACUGUUUUGUGAACGGAGGAUUUGUACGCUAAAUUUCA2000000009UCCUUAUUUGGCGUCAAAGUUGAUGCAAAGUUUAUGUACCAUGAGACUUCUAGUGAUUGCCUACUUUCACAUUUAUUUAAAUUUUUGUGAAAGAAAAUACAGUUUUAAAGGCUAUAGGAAUGUGUUAUAUGUACCUUAAACAGAUAAUUUAAUUUUAGCAAUUUAUCAUAACUGAUACUUAGCUAACAAUUGUCCAUAACUUGUUUAAGUGUAAGAAAUACCAUUUCAGGAAUGAAAAAGAAGGAAUACUACUUUCUAAGAAAGAAGAUCUUAUAAUAGACAUAUUUAGUAGGUUAAACUACUCCUUUGAAAGAAUAAGUUUUGGUUCAAAGUCAAUAAUGAAGACGAGAUUUGUUUUUCUCUUCUCUGGCUGAUUUUUAAGGAUAUUAUGUAGUUCAUUUAGUUAACAGAAUUGAAAUGUUUGAUAUGGCAAGAUAGGUAUGGUAAUUUCAAAGUGAAUUGGGAAUUCCUCUGGCUCAUAGAACCCUUUUUUUUUUCCU2000000009UUAAGUAUUCUUGAGAUACAAAAAAAAAAAGUAAAUACAAUUUCAAAAAAAAAGUUCCGGAUCUGUUUUUAAGCUCCAUCUGGUCCUCAUAACCUGCAAGAUUUUUCUUAAAACCUUUCAGCUGAAAGUGGGGGUAAAGGUGGAGUAAUCUGUGGAUUUGUUUCUGUUGUCUUUUAAAAUGUCAAAUAUAUAAUAUGUAAUUUUUUUAAAAACCACCAGAUACAGAAAUGUGCU2000000009UUA2000000006ACAUCAGUUGAAACCUAAAUUUUCUUAUGUUGUGGUGAUUGUAUUAAAAAGGGAUAAAAGAAGAGUGUCAAACAUGGUUAAAUAUAUUGUACUCAUUUAUGUUGAAUACGUAUUAAAAUUAAGACAAAUGGAAAAUUAUACUUUGAGUAUAUAAUUUGUUAAAUAUUACU2000000009UUAUAUGGUAAUUUUAUGUAUAAUUUCAUAUAUUGGUAAAAUUCAAAACUACACUUGAGAAUUUUUUUAUCUUAAGUUUGGGGUGAAUGGGGUGGAUGAGACUGAUUGAAUAGAAAAGGGCUAAUGGCCCAAACAUUAUAUAGAUUUCUUUUUUUCAGUCAGAGGCCUUAUUUGAUAUUUUAUAAAUAAAUGACAGUUUUUAUUUUUAAACUUUUUAUUGUUUUUGGGAAAGUAUUCCUUAAUUUAAUGACACAUUCAUUCAGAUACUUCUUAUCCCUGCUAAUAAAGGAAAUCUAUUUCAAGCUACACCAUUGAGAUUAAGUCUGAGGCAGUUCAUUGAGGCAGCUCUACUAUAAAAGCUUACUUGAUAAAUAAUUAUUUUUGUAA2000000006ACAAGUUGGGUUA2000000006ACUUAUUCUUCGUCUUUUUGCUUGGAUAUGAAUUUAAGGUCUUCAUGUUUAAAGACAUUUACUUUGUUAUUUAGUGACACAUUUCCAUCCUAUUUUUUUUUUUUUUUUGGUUGUUGUUAA2000000006ACAGAACCUUAAGUUUAUGUUUGAGGUAUGUACUGCAUAGGAACCUAUUUUAUUAUUAAAGAUGAAUGAUUAAAAUUGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 250 710 1084 1178 1181 1427 1927 2161 2164 2334 2721 2734 2854
Modification Positions Y Y m6A m6A Y Y Y Y m6A Y m6A m6A m6A
Genomic Coordinates 12:26954153:+ 12:26960573:+ 12:26964800:+ 12:26964894:+ 12:26964897:+ 12:26965143:+ 12:26965643:+ 12:26965877:+ 12:26965880:+ 12:26966050:+ 12:26966437:+ 12:26966450:+ 12:26966570:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
VyCX26p5UBRL
8cMbzB4aD5Se
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
VyCX26p5UBRL
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP
BtsJQJ3DteUq
dknfVe6BK8aP