Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000668253
Gene ID: ENSG00000248008
Gene Name: NRAV
Sequence (UNICHARACTER ENCODING) AUUUUGUUGCAGACCACAAUGCACCGCUCACGGCGUCGGUUGCCCGGGCAAUGGGCCGCACGCUACGAGGCCCACACACCCAGAAGGUGGAGCCCCGGCCGGGUUACGAGGACCACCCAGCUGUCUGGAGAGAUGAAGAAAAUGAGGUUCAAAGAGAUGAAGUCUCUUGCCUAAAGUCAGUGACAGAAAGUGACAGAGCUGGGAUGUGAAUCCUGGUCUGACUCUACAGUCCCACAUGGUAGAUGGAACCUCCGAGCAACACCUAAACAAAAGGAGUUGAUGCCUCCGAACAGAGUAAUGUCGCUGGAGACACUAAGCAUCGUCGGCCCCUGGCAGGAGCUCCCUAAAUAUGUGUUGGAUGGAUGGAAGAAAGGAUGGAUAGUUCAGAGUACUUCAGCCUUGAUUCCUCCGCAACAGACACCUGAAACUUGACCCUACAUUGGUUCUUGGCCAUCGUGAUCUUCCUUGGЖCAGAAUCACCUUUCAGCUCCGGUCAUCAGЖCUUUCCCAGGGCCCUCAGAAAGCCCUUCAGAGUUGUUACUCACAGGCAGGCUGAGGGAUUCCUUACGGGGUCUGCAGCUCUCCUCACCUCAPCCACAAGUAGGЖCCGUGGCCUGUUCCUCACUACUGCCCCAGGAUCACUCUGUUCCCAGCCCAGUCCAGCAAUCACUUGUCUAGCUUUCUGGAЖCCUUGAGUЖCUUUCUUGAЖCCAUGAGUCCUGUGACCACCCUAGCAGCUCUAACCCUCCCUUAUCUGAAAGGAAGUGUGAGGUGACCUUGCAGGUCCCAGAGUUGAUUGAAGACCCCAUCCAGAAAGAAGGCACCCUGUGGGAGAGAUUGCAAGGCCUAGGUCUGAAUCCGGAAGCUUCCACCCCAUGGAGAAGGGCUGGCACCAGCCUGGGGCUGGCAGUGGAGCUGAGCUUUGGAGCCAAGGЖCUGUACUGCAGUGCAGGGAGAGUGAGGCCAGAAAGGCUGAGACAACUCAGGGAAAGAAAACCUCCCUUCUGGCUAAUAGUCAAGCACCGCCUGAGUAGACCAACACUCUCCUGUCCACAGGGGCAGCAGAUGAAGACACAACCAGAGAGGЖCUAЖCAGGCCCCCUCAGCUCUCAGUCAGAGGGCAGAGCAACACAGAAUAGЖCAUUAAAGGAЖCAGЖCUUUGAGGCCAGGCAGCCUUGGGUGUGCAUCUGUCCCUACUAAGCCAUGUGЖCAUUAAACAAGUGAGUCCACCUCUCUGA
Sequence (SHORT NAMES ENCODING) AUUUUGUUGCAGACCACAAUGCACCGCUCACGGCGUCGGUUGCCCGGGCAAUGGGCCGCACGCUACGAGGCCCACACACCCAGAAGGUGGAGCCCCGGCCGGGUUACGAGGACCACCCAGCUGUCUGGAGAGAUGAAGAAAAUGAGGUUCAAAGAGAUGAAGUCUCUUGCCUAAAGUCAGUGACAGAAAGUGACAGAGCUGGGAUGUGAAUCCUGGUCUGACUCUACAGUCCCACAUGGUAGAUGGAACCUCCGAGCAACACCUAAACAAAAGGAGUUGAUGCCUCCGAACAGAGUAAUGUCGCUGGAGACACUAAGCAUCGUCGGCCCCUGGCAGGAGCUCCCUAAAUAUGUGUUGGAUGGAUGGAAGAAAGGAUGGAUAGUUCAGAGUACUUCAGCCUUGAUUCCUCCGCAACAGACACCUGAAACUUGACCCUACAUUGGUUCUUGGCCAUCGUGAUCUUCCUUGGm6ACAGAAUCACCUUUCAGCUCCGGUCAUCAGm6ACUUUCCCAGGGCCCUCAGAAAGCCCUUCAGAGUUGUUACUCACAGGCAGGCUGAGGGAUUCCUUACGGGGUCUGCAGCUCUCCUCACCUCAYCCACAAGUAGGm6ACCGUGGCCUGUUCCUCACUACUGCCCCAGGAUCACUCUGUUCCCAGCCCAGUCCAGCAAUCACUUGUCUAGCUUUCUGGAm6ACCUUGAGUm6ACUUUCUUGAm6ACCAUGAGUCCUGUGACCACCCUAGCAGCUCUAACCCUCCCUUAUCUGAAAGGAAGUGUGAGGUGACCUUGCAGGUCCCAGAGUUGAUUGAAGACCCCAUCCAGAAAGAAGGCACCCUGUGGGAGAGAUUGCAAGGCCUAGGUCUGAAUCCGGAAGCUUCCACCCCAUGGAGAAGGGCUGGCACCAGCCUGGGGCUGGCAGUGGAGCUGAGCUUUGGAGCCAAGGm6ACUGUACUGCAGUGCAGGGAGAGUGAGGCCAGAAAGGCUGAGACAACUCAGGGAAAGAAAACCUCCCUUCUGGCUAAUAGUCAAGCACCGCCUGAGUAGACCAACACUCUCCUGUCCACAGGGGCAGCAGAUGAAGACACAACCAGAGAGGm6ACUAm6ACAGGCCCCCUCAGCUCUCAGUCAGAGGGCAGAGCAACACAGAAUAGm6ACAUUAAAGGAm6ACAGm6ACUUUGAGGCCAGGCAGCCUUGGGUGUGCAUCUGUCCCUACUAAGCCAUGUGm6ACAUUAAACAAGUGAGUCCACCUCUCUGA
Sequence (MODOMICS CODE ENCODING) AUUUUGUUGCAGACCACAAUGCACCGCUCACGGCGUCGGUUGCCCGGGCAAUGGGCCGCACGCUACGAGGCCCACACACCCAGAAGGUGGAGCCCCGGCCGGGUUACGAGGACCACCCAGCUGUCUGGAGAGAUGAAGAAAAUGAGGUUCAAAGAGAUGAAGUCUCUUGCCUAAAGUCAGUGACAGAAAGUGACAGAGCUGGGAUGUGAAUCCUGGUCUGACUCUACAGUCCCACAUGGUAGAUGGAACCUCCGAGCAACACCUAAACAAAAGGAGUUGAUGCCUCCGAACAGAGUAAUGUCGCUGGAGACACUAAGCAUCGUCGGCCCCUGGCAGGAGCUCCCUAAAUAUGUGUUGGAUGGAUGGAAGAAAGGAUGGAUAGUUCAGAGUACUUCAGCCUUGAUUCCUCCGCAACAGACACCUGAAACUUGACCCUACAUUGGUUCUUGGCCAUCGUGAUCUUCCUUGG2000000006ACAGAAUCACCUUUCAGCUCCGGUCAUCAG2000000006ACUUUCCCAGGGCCCUCAGAAAGCCCUUCAGAGUUGUUACUCACAGGCAGGCUGAGGGAUUCCUUACGGGGUCUGCAGCUCUCCUCACCUCA2000000009UCCACAAGUAGG2000000006ACCGUGGCCUGUUCCUCACUACUGCCCCAGGAUCACUCUGUUCCCAGCCCAGUCCAGCAAUCACUUGUCUAGCUUUCUGGA2000000006ACCUUGAGU2000000006ACUUUCUUGA2000000006ACCAUGAGUCCUGUGACCACCCUAGCAGCUCUAACCCUCCCUUAUCUGAAAGGAAGUGUGAGGUGACCUUGCAGGUCCCAGAGUUGAUUGAAGACCCCAUCCAGAAAGAAGGCACCCUGUGGGAGAGAUUGCAAGGCCUAGGUCUGAAUCCGGAAGCUUCCACCCCAUGGAGAAGGGCUGGCACCAGCCUGGGGCUGGCAGUGGAGCUGAGCUUUGGAGCCAAGG2000000006ACUGUACUGCAGUGCAGGGAGAGUGAGGCCAGAAAGGCUGAGACAACUCAGGGAAAGAAAACCUCCCUUCUGGCUAAUAGUCAAGCACCGCCUGAGUAGACCAACACUCUCCUGUCCACAGGGGCAGCAGAUGAAGACACAACCAGAGAGG2000000006ACUA2000000006ACAGGCCCCCUCAGCUCUCAGUCAGAGGGCAGAGCAACACAGAAUAG2000000006ACAUUAAAGGA2000000006ACAG2000000006ACUUUGAGGCCAGGCAGCCUUGGGUGUGCAUCUGUCCCUACUAAGCCAUGUG2000000006ACAUUAAACAAGUGAGUCCACCUCUCUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 470 500 592 604 685 694 704 929 1080 1084 1131 1142 1146 1198
Modification Positions m6A m6A Y m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 12:120491773:- 12:120491743:- 12:120491651:- 12:120491639:- 12:120491558:- 12:120491549:- 12:120491539:- 12:120491314:- 12:120491163:- 12:120491159:- 12:120491112:- 12:120491101:- 12:120491097:- 12:120491045:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
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6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
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Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
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Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
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UKen6WEino9G
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dknfVe6BK8aP
3TeAZFYFxgvp
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aJksAshEgQ8U
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KENzb7mwdBd9
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PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
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gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
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msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
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UN3tNpbCPHYf
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VL7zkHvkfkoB
VyCX26p5UBRL
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5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
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VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
bXBqJigD9oV3
dknfVe6BK8aP
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
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nGifePrmgHfe
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Q36pf44ZRvxu
QmcpiJ88DBDn
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UN3tNpbCPHYf
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VL7zkHvkfkoB
WdHxkJGRmFxn
bXBqJigD9oV3
dknfVe6BK8aP
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3TeAZFYFxgvp
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V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
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Lny8GcCeVGc9
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dknfVe6BK8aP