Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000541507
Gene ID: ENSG00000003056
Gene Name: M6PR
Sequence (UNICHARACTER ENCODING) CACAGCGAGGCGCUAGGGGGAACGCUGGCCUCUGAAACUAGCUCUGGGACCGGGGUCUGCGGCCGGCCCCUAGCUGGCCCCGUCUCCCAPCCCCAGAAGGGUAUUCACUGGGGAUUCUGAGCUUUGGCUACUCCAGUUUCCCACGACACGAUGUUCCCUUUCUACAGCUGCUGGAGGACUGGACUGCUACUACUACUCCUGGCUGUGGCAGUGAGAGAAUCCUGGCAGACAGAAGAAAAAACUUGCGACUUGGUAGGAGAAAAGGGUAAAGAGUCAGAGAAAGAGUUGGCUCUAGUGAAGAGGCUGAAACCACUGUUUAAUAAAAGCUUUGAGAGCACUGUGGGCCAGGGUPCAGЖCACAUACЖUCUACAUCUUCAGGGUGUGCCGGGAAGCUGGCAACCACACUUCUG#GGCAGGCCUGGUGCAAAUCAACAAAAGUAAUGGGAAGGAGACAGUGGUAGGGAGACUCAACGAGACUCACAUCUUCAACGGAAGUUUGCAUCACUGGUUGCUGUUUAUGUUGUUGGGGGGUUCCUAUACCAGCGACUGGUAGUGGGAGCCAAAGGAAUGGAGCAGUUUCCCCACUUAGCCUUCUGGCAGGAUCUUGGCAACCUGGUAGCAGAUGGCUGUGACUUUGUCUGCCGUUCUAAACCUCGAAAUGUGCCUGCAGCAUAUCGUGGUGUGGGGGAUGACCAGCUGGGGGAGGAGUCAGAAGAAAGGGAUGACCAUUUAUUACCAAUGUAGAUUGCACUPUAUAUGUCCAGCCUCUUCCUCAGUCCCCCAAACCAAAGCUACACAGCCAGAUUUCUCAAGCAGUCUCAACUCCAGUCCCUCAUCUCACCCUUACUAUUGCUCUUGCUUUCCAGUUUGCUUUUGAUUUGCAUCUUCUCACUAGUAAAACUGCCUUCCCUUUGUUCCUUAUUUUCUGUUUUUUCUCUAGAGAGGUACAGUUGUAAGUCAGAGUUAAUAUAAUAGGGCCUGUGAAAACAGAGGCUUUUGCAUUGUCUCUUGACAUCAGAAGUUACAAUAGGCAUAUGGGCAAAAUGGUGUAGCAGGCUCACUGGCCGUUUGUUUUUUAAЖCACAUUUUCACAAGUUUUUGAGACACUGGAUUUCUPUAAUUAAAAAAAAAAUGCCAAGAAACAUUAUUUAUACAGGGUUGAUUGCUUUCAUGUUGUUAUUCUGUACCCUAUAGUAGCCUCCAUGAGAAUCUGGUAUUUCUUGCUGCUUGGAACUACUUUGCAGUGAUUACUUGGUPGCAGUCCAAGUACUCUCGUUUAGUCUGAGCCUGGAGAUGUUCUAGACUUGCUUCUCCCACCUCUGAGAUUAGGACAGGAAAAAUGUGAAAUUUCCCAAUUACAGGAUUAUACGGUACCAUCACAUCAUUUGUGGAAAUUGGGGUGACUGUAUAGCUGGGAUUGGGCUAAGGACUGUGGUCUUAUCUGUCCACAUACAGCCAAAAUGCCUAUCCAGAAAUCCAGUUCGUUGGAAAGGAAAAUUGGUACUCCUGUGCCACAGGGGUUCCAGAAAAGGGAAGUCACUPUACCUUGCGGUGGUGGGAUCCUGAUGUCUUUCAPCCAUUUGUAGUAAAAGCUGGUAAAGCUUUUCUUACUCCUGGUUCCCUACCAGUAUUUCUAAACAUGUCGCACUUUCUCCACAGGCAUGUGGUUUUGACCUUUUUUUCAAUCUUCUAGAAAGGGAACGGAAGCAGAAGUGGGACAUCGAGGGCUCUGCUGUCCUCUGCGCUGGGUGUGGAAUGCUGCUGCACCUGUCCCUUCUGCUGGCUCAGGGAAGUGUCUUCUUGCCCACAUUUCUGUGGGGAAAGGUUUUUAAUCCUCUGAUGCUUCCAUCUUCCUGUUUAGGCCAUGUGCCCAGAAACCUGGЖCUGAUCUUUCUPUAAUAGUGAACCCCUGGGCCACUGAAGAGUAACAUGGCUCCACUGGЖCACAAAAGAGGGAUGGAAUCAACAGGCAGGGGGCCUUUUAUAAGCCUUAGGAAAAGAAAAUGAAACUAUUUCAUCUUUGGЖCUUUUCAAUACUAUUGGAGUGAUUUUUUUCUUUCUAAЖCAGGGAAAAUAAUGUUACAAAAGCAUCUUUUUUGUUAUUUGUUUGCAUCCCUCCCCCACACCCUGGUGUUUUAAAAUGAAGAAAAAAAACCAUCACCUUUUGUACAAAAACUCUUAAUGAUUAAAAAACAAACAAAACA
Sequence (SHORT NAMES ENCODING) CACAGCGAGGCGCUAGGGGGAACGCUGGCCUCUGAAACUAGCUCUGGGACCGGGGUCUGCGGCCGGCCCCUAGCUGGCCCCGUCUCCCAYCCCCAGAAGGGUAUUCACUGGGGAUUCUGAGCUUUGGCUACUCCAGUUUCCCACGACACGAUGUUCCCUUUCUACAGCUGCUGGAGGACUGGACUGCUACUACUACUCCUGGCUGUGGCAGUGAGAGAAUCCUGGCAGACAGAAGAAAAAACUUGCGACUUGGUAGGAGAAAAGGGUAAAGAGUCAGAGAAAGAGUUGGCUCUAGUGAAGAGGCUGAAACCACUGUUUAAUAAAAGCUUUGAGAGCACUGUGGGCCAGGGUYCAGm6ACACAUACm6AUCUACAUCUUCAGGGUGUGCCGGGAAGCUGGCAACCACACUUCUGGmGGCAGGCCUGGUGCAAAUCAACAAAAGUAAUGGGAAGGAGACAGUGGUAGGGAGACUCAACGAGACUCACAUCUUCAACGGAAGUUUGCAUCACUGGUUGCUGUUUAUGUUGUUGGGGGGUUCCUAUACCAGCGACUGGUAGUGGGAGCCAAAGGAAUGGAGCAGUUUCCCCACUUAGCCUUCUGGCAGGAUCUUGGCAACCUGGUAGCAGAUGGCUGUGACUUUGUCUGCCGUUCUAAACCUCGAAAUGUGCCUGCAGCAUAUCGUGGUGUGGGGGAUGACCAGCUGGGGGAGGAGUCAGAAGAAAGGGAUGACCAUUUAUUACCAAUGUAGAUUGCACUYUAUAUGUCCAGCCUCUUCCUCAGUCCCCCAAACCAAAGCUACACAGCCAGAUUUCUCAAGCAGUCUCAACUCCAGUCCCUCAUCUCACCCUUACUAUUGCUCUUGCUUUCCAGUUUGCUUUUGAUUUGCAUCUUCUCACUAGUAAAACUGCCUUCCCUUUGUUCCUUAUUUUCUGUUUUUUCUCUAGAGAGGUACAGUUGUAAGUCAGAGUUAAUAUAAUAGGGCCUGUGAAAACAGAGGCUUUUGCAUUGUCUCUUGACAUCAGAAGUUACAAUAGGCAUAUGGGCAAAAUGGUGUAGCAGGCUCACUGGCCGUUUGUUUUUUAAm6ACACAUUUUCACAAGUUUUUGAGACACUGGAUUUCUYUAAUUAAAAAAAAAAUGCCAAGAAACAUUAUUUAUACAGGGUUGAUUGCUUUCAUGUUGUUAUUCUGUACCCUAUAGUAGCCUCCAUGAGAAUCUGGUAUUUCUUGCUGCUUGGAACUACUUUGCAGUGAUUACUUGGUYGCAGUCCAAGUACUCUCGUUUAGUCUGAGCCUGGAGAUGUUCUAGACUUGCUUCUCCCACCUCUGAGAUUAGGACAGGAAAAAUGUGAAAUUUCCCAAUUACAGGAUUAUACGGUACCAUCACAUCAUUUGUGGAAAUUGGGGUGACUGUAUAGCUGGGAUUGGGCUAAGGACUGUGGUCUUAUCUGUCCACAUACAGCCAAAAUGCCUAUCCAGAAAUCCAGUUCGUUGGAAAGGAAAAUUGGUACUCCUGUGCCACAGGGGUUCCAGAAAAGGGAAGUCACUYUACCUUGCGGUGGUGGGAUCCUGAUGUCUUUCAYCCAUUUGUAGUAAAAGCUGGUAAAGCUUUUCUUACUCCUGGUUCCCUACCAGUAUUUCUAAACAUGUCGCACUUUCUCCACAGGCAUGUGGUUUUGACCUUUUUUUCAAUCUUCUAGAAAGGGAACGGAAGCAGAAGUGGGACAUCGAGGGCUCUGCUGUCCUCUGCGCUGGGUGUGGAAUGCUGCUGCACCUGUCCCUUCUGCUGGCUCAGGGAAGUGUCUUCUUGCCCACAUUUCUGUGGGGAAAGGUUUUUAAUCCUCUGAUGCUUCCAUCUUCCUGUUUAGGCCAUGUGCCCAGAAACCUGGm6ACUGAUCUUUCUYUAAUAGUGAACCCCUGGGCCACUGAAGAGUAACAUGGCUCCACUGGm6ACACAAAAGAGGGAUGGAAUCAACAGGCAGGGGGCCUUUUAUAAGCCUUAGGAAAAGAAAAUGAAACUAUUUCAUCUUUGGm6ACUUUUCAAUACUAUUGGAGUGAUUUUUUUCUUUCUAAm6ACAGGGAAAAUAAUGUUACAAAAGCAUCUUUUUUGUUAUUUGUUUGCAUCCCUCCCCCACACCCUGGUGUUUUAAAAUGAAGAAAAAAAACCAUCACCUUUUGUACAAAAACUCUUAAUGAUUAAAAAACAAACAAAACA
Sequence (MODOMICS CODE ENCODING) CACAGCGAGGCGCUAGGGGGAACGCUGGCCUCUGAAACUAGCUCUGGGACCGGGGUCUGCGGCCGGCCCCUAGCUGGCCCCGUCUCCCA2000000009UCCCCAGAAGGGUAUUCACUGGGGAUUCUGAGCUUUGGCUACUCCAGUUUCCCACGACACGAUGUUCCCUUUCUACAGCUGCUGGAGGACUGGACUGCUACUACUACUCCUGGCUGUGGCAGUGAGAGAAUCCUGGCAGACAGAAGAAAAAACUUGCGACUUGGUAGGAGAAAAGGGUAAAGAGUCAGAGAAAGAGUUGGCUCUAGUGAAGAGGCUGAAACCACUGUUUAAUAAAAGCUUUGAGAGCACUGUGGGCCAGGGU2000000009UCAG2000000006ACACAUAC2000000006AUCUACAUCUUCAGGGUGUGCCGGGAAGCUGGCAACCACACUUCUG2000000090GGGCAGGCCUGGUGCAAAUCAACAAAAGUAAUGGGAAGGAGACAGUGGUAGGGAGACUCAACGAGACUCACAUCUUCAACGGAAGUUUGCAUCACUGGUUGCUGUUUAUGUUGUUGGGGGGUUCCUAUACCAGCGACUGGUAGUGGGAGCCAAAGGAAUGGAGCAGUUUCCCCACUUAGCCUUCUGGCAGGAUCUUGGCAACCUGGUAGCAGAUGGCUGUGACUUUGUCUGCCGUUCUAAACCUCGAAAUGUGCCUGCAGCAUAUCGUGGUGUGGGGGAUGACCAGCUGGGGGAGGAGUCAGAAGAAAGGGAUGACCAUUUAUUACCAAUGUAGAUUGCACU2000000009UUAUAUGUCCAGCCUCUUCCUCAGUCCCCCAAACCAAAGCUACACAGCCAGAUUUCUCAAGCAGUCUCAACUCCAGUCCCUCAUCUCACCCUUACUAUUGCUCUUGCUUUCCAGUUUGCUUUUGAUUUGCAUCUUCUCACUAGUAAAACUGCCUUCCCUUUGUUCCUUAUUUUCUGUUUUUUCUCUAGAGAGGUACAGUUGUAAGUCAGAGUUAAUAUAAUAGGGCCUGUGAAAACAGAGGCUUUUGCAUUGUCUCUUGACAUCAGAAGUUACAAUAGGCAUAUGGGCAAAAUGGUGUAGCAGGCUCACUGGCCGUUUGUUUUUUAA2000000006ACACAUUUUCACAAGUUUUUGAGACACUGGAUUUCU2000000009UUAAUUAAAAAAAAAAUGCCAAGAAACAUUAUUUAUACAGGGUUGAUUGCUUUCAUGUUGUUAUUCUGUACCCUAUAGUAGCCUCCAUGAGAAUCUGGUAUUUCUUGCUGCUUGGAACUACUUUGCAGUGAUUACUUGGU2000000009UGCAGUCCAAGUACUCUCGUUUAGUCUGAGCCUGGAGAUGUUCUAGACUUGCUUCUCCCACCUCUGAGAUUAGGACAGGAAAAAUGUGAAAUUUCCCAAUUACAGGAUUAUACGGUACCAUCACAUCAUUUGUGGAAAUUGGGGUGACUGUAUAGCUGGGAUUGGGCUAAGGACUGUGGUCUUAUCUGUCCACAUACAGCCAAAAUGCCUAUCCAGAAAUCCAGUUCGUUGGAAAGGAAAAUUGGUACUCCUGUGCCACAGGGGUUCCAGAAAAGGGAAGUCACU2000000009UUACCUUGCGGUGGUGGGAUCCUGAUGUCUUUCA2000000009UCCAUUUGUAGUAAAAGCUGGUAAAGCUUUUCUUACUCCUGGUUCCCUACCAGUAUUUCUAAACAUGUCGCACUUUCUCCACAGGCAUGUGGUUUUGACCUUUUUUUCAAUCUUCUAGAAAGGGAACGGAAGCAGAAGUGGGACAUCGAGGGCUCUGCUGUCCUCUGCGCUGGGUGUGGAAUGCUGCUGCACCUGUCCCUUCUGCUGGCUCAGGGAAGUGUCUUCUUGCCCACAUUUCUGUGGGGAAAGGUUUUUAAUCCUCUGAUGCUUCCAUCUUCCUGUUUAGGCCAUGUGCCCAGAAACCUGG2000000006ACUGAUCUUUCU2000000009UUAAUAGUGAACCCCUGGGCCACUGAAGAGUAACAUGGCUCCACUGG2000000006ACACAAAAGAGGGAUGGAAUCAACAGGCAGGGGGCCUUUUAUAAGCCUUAGGAAAAGAAAAUGAAACUAUUUCAUCUUUGG2000000006ACUUUUCAAUACUAUUGGAGUGAUUUUUUUCUUUCUAA2000000006ACAGGGAAAAUAAUGUUACAAAAGCAUCUUUUUUGUUAUUUGUUUGCAUCCCUCCCCCACACCCUGGUGUUUUAAAAUGAAGAAAAAAAACCAUCACCUUUUGUACAAAAACUCUUAAUGAUUAAAAAACAAACAAAACA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 90 352 356 364 410 752 1079 1115 1255 1540 1574 1881 1893 1940 2021 2059
Modification Positions Y Um m6A m6A Gm Y m6A Y Y Y Y m6A Y m6A m6A m6A
Genomic Coordinates 12:8949547:- 12:8945559:- 12:8945555:- 12:8945547:- 12:8945501:- 12:8941809:- 12:8941482:- 12:8941446:- 12:8941306:- 12:8941021:- 12:8940987:- 12:8940680:- 12:8940668:- 12:8940621:- 12:8940540:- 12:8940502:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
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