Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000705786
Gene ID: ENSG00000070961
Gene Name: ATP2B1
Sequence (UNICHARACTER ENCODING) CAUGUUGUGAUGGAGUGGGCUACAGUUCAACACAUCCCUGUUGCCCAUAUUCUUUGCACUUUGCUUAUGGUUCAAGAGUACCUACUAUGUUCCAGACAGUGCUGGGGUUAAAAAUGAAUGGCACAGAUUCUCCCAUGAGUUACAGUUCACUGGGAAGGACAGAGAGAUGUGUAUAUCUCAUGAUUGAUAUGGAGAAACUAGUCAUGGGCCAAAGGUCAAGAUACUUCUCUGGGAAAUGUUGCUGCUGAUGCUGCUUUACAAAGUCAUACAAUGAGUGUUUGGUUUAAGAAAGAUUUUCAUACUUAAAAGAUUUUCAUCUUGGAAAUACAUCAAGUGAAAAUUAAAUUCUUUUGGGAAЖCAUUUUCCUUCUGAUAUAUUAUACUUGUAAUGGGCGACAUGGCAAACAACUCAGUUGCUUACAGUGGUGUGAAAAЖCUCUUUGAAGGAAGCUAAUCAUGAUGGAGЖCUUUGGAAUUACGCUCGCAGAGCUGCGGGCUCUCAUGGAGCUCAGGUCCACAGAUGCAUUACGAAAAAUACAGGAAAGCUAUGGAGAUGUCUAUGGAAUUUGCACCAAAUUGAAAACAUCUCCCAAUGAAGGUUUAAGUGGAAACCCUGCAGAUUUAGAAAGAAGAGAAGCAGUGUUUGGAAAGAAUUUUAUACCUCCUAAAAAGCCAAAAACCUUUCUUCAAUUAGUAUGGGAAGCAUUACAAGAUGUCACUUUAAUUAUAUUAGAAAUUGCAGCCAUAGUAUCAUUGGGCCUUUCUUUUUAUCAGCCUCCAGAAGGGGAUAAUGCACUUUGUGGAGAAGUUUCUGUUGGGGAGGAAGAAGGUGAAGGUGAAACUGGUUGGAUUGAAGGAGCUGCAAUCCUCUUGUCUGUAGUGUGUGUGGUGUUAGUAACAGCUUUCAAUGACUGGAGUAAGGAAAAACAGUUUAGAGGUUUGCAGAGCCGAAUUGAACAAGAACAGAAGUUCACUGUCAUCAGGGGUGGUCAGGUCAUUCAGAUACCUGUAGCUGACAUUACUGUUGGAGAUAUUGCUCAAGUGAAAUAUGGUGAUCUUCUUCCAGCUGACGGCAUACUUAUUCAAGGCAACGAUCUUAAAAUUGAUGAAAGCUCAUUGACUGGUGAAUCAGAUCAUGUUAAAAAGUCUUUAGAUAAGGAUCCCUUACUUCUAUCAGGUACUCAUGUAAUGGAAGGCUCUGGAAGAAUGGUAGUUACAGCUGUAGGUGUAAAUUCUCAAACUGGAAUUAUCUUUACCUUACUUGGAGCUGGAGGUGAAGAGGAAGAGAAGAAAGAUGAGAAGAAAAA
Sequence (SHORT NAMES ENCODING) CAUGUUGUGAUGGAGUGGGCUACAGUUCAACACAUCCCUGUUGCCCAUAUUCUUUGCACUUUGCUUAUGGUUCAAGAGUACCUACUAUGUUCCAGACAGUGCUGGGGUUAAAAAUGAAUGGCACAGAUUCUCCCAUGAGUUACAGUUCACUGGGAAGGACAGAGAGAUGUGUAUAUCUCAUGAUUGAUAUGGAGAAACUAGUCAUGGGCCAAAGGUCAAGAUACUUCUCUGGGAAAUGUUGCUGCUGAUGCUGCUUUACAAAGUCAUACAAUGAGUGUUUGGUUUAAGAAAGAUUUUCAUACUUAAAAGAUUUUCAUCUUGGAAAUACAUCAAGUGAAAAUUAAAUUCUUUUGGGAAm6ACAUUUUCCUUCUGAUAUAUUAUACUUGUAAUGGGCGACAUGGCAAACAACUCAGUUGCUUACAGUGGUGUGAAAAm6ACUCUUUGAAGGAAGCUAAUCAUGAUGGAGm6ACUUUGGAAUUACGCUCGCAGAGCUGCGGGCUCUCAUGGAGCUCAGGUCCACAGAUGCAUUACGAAAAAUACAGGAAAGCUAUGGAGAUGUCUAUGGAAUUUGCACCAAAUUGAAAACAUCUCCCAAUGAAGGUUUAAGUGGAAACCCUGCAGAUUUAGAAAGAAGAGAAGCAGUGUUUGGAAAGAAUUUUAUACCUCCUAAAAAGCCAAAAACCUUUCUUCAAUUAGUAUGGGAAGCAUUACAAGAUGUCACUUUAAUUAUAUUAGAAAUUGCAGCCAUAGUAUCAUUGGGCCUUUCUUUUUAUCAGCCUCCAGAAGGGGAUAAUGCACUUUGUGGAGAAGUUUCUGUUGGGGAGGAAGAAGGUGAAGGUGAAACUGGUUGGAUUGAAGGAGCUGCAAUCCUCUUGUCUGUAGUGUGUGUGGUGUUAGUAACAGCUUUCAAUGACUGGAGUAAGGAAAAACAGUUUAGAGGUUUGCAGAGCCGAAUUGAACAAGAACAGAAGUUCACUGUCAUCAGGGGUGGUCAGGUCAUUCAGAUACCUGUAGCUGACAUUACUGUUGGAGAUAUUGCUCAAGUGAAAUAUGGUGAUCUUCUUCCAGCUGACGGCAUACUUAUUCAAGGCAACGAUCUUAAAAUUGAUGAAAGCUCAUUGACUGGUGAAUCAGAUCAUGUUAAAAAGUCUUUAGAUAAGGAUCCCUUACUUCUAUCAGGUACUCAUGUAAUGGAAGGCUCUGGAAGAAUGGUAGUUACAGCUGUAGGUGUAAAUUCUCAAACUGGAAUUAUCUUUACCUUACUUGGAGCUGGAGGUGAAGAGGAAGAGAAGAAAGAUGAGAAGAAAAA
Sequence (MODOMICS CODE ENCODING) CAUGUUGUGAUGGAGUGGGCUACAGUUCAACACAUCCCUGUUGCCCAUAUUCUUUGCACUUUGCUUAUGGUUCAAGAGUACCUACUAUGUUCCAGACAGUGCUGGGGUUAAAAAUGAAUGGCACAGAUUCUCCCAUGAGUUACAGUUCACUGGGAAGGACAGAGAGAUGUGUAUAUCUCAUGAUUGAUAUGGAGAAACUAGUCAUGGGCCAAAGGUCAAGAUACUUCUCUGGGAAAUGUUGCUGCUGAUGCUGCUUUACAAAGUCAUACAAUGAGUGUUUGGUUUAAGAAAGAUUUUCAUACUUAAAAGAUUUUCAUCUUGGAAAUACAUCAAGUGAAAAUUAAAUUCUUUUGGGAA2000000006ACAUUUUCCUUCUGAUAUAUUAUACUUGUAAUGGGCGACAUGGCAAACAACUCAGUUGCUUACAGUGGUGUGAAAA2000000006ACUCUUUGAAGGAAGCUAAUCAUGAUGGAG2000000006ACUUUGGAAUUACGCUCGCAGAGCUGCGGGCUCUCAUGGAGCUCAGGUCCACAGAUGCAUUACGAAAAAUACAGGAAAGCUAUGGAGAUGUCUAUGGAAUUUGCACCAAAUUGAAAACAUCUCCCAAUGAAGGUUUAAGUGGAAACCCUGCAGAUUUAGAAAGAAGAGAAGCAGUGUUUGGAAAGAAUUUUAUACCUCCUAAAAAGCCAAAAACCUUUCUUCAAUUAGUAUGGGAAGCAUUACAAGAUGUCACUUUAAUUAUAUUAGAAAUUGCAGCCAUAGUAUCAUUGGGCCUUUCUUUUUAUCAGCCUCCAGAAGGGGAUAAUGCACUUUGUGGAGAAGUUUCUGUUGGGGAGGAAGAAGGUGAAGGUGAAACUGGUUGGAUUGAAGGAGCUGCAAUCCUCUUGUCUGUAGUGUGUGUGGUGUUAGUAACAGCUUUCAAUGACUGGAGUAAGGAAAAACAGUUUAGAGGUUUGCAGAGCCGAAUUGAACAAGAACAGAAGUUCACUGUCAUCAGGGGUGGUCAGGUCAUUCAGAUACCUGUAGCUGACAUUACUGUUGGAGAUAUUGCUCAAGUGAAAUAUGGUGAUCUUCUUCCAGCUGACGGCAUACUUAUUCAAGGCAACGAUCUUAAAAUUGAUGAAAGCUCAUUGACUGGUGAAUCAGAUCAUGUUAAAAAGUCUUUAGAUAAGGAUCCCUUACUUCUAUCAGGUACUCAUGUAAUGGAAGGCUCUGGAAGAAUGGUAGUUACAGCUGUAGGUGUAAAUUCUCAAACUGGAAUUAUCUUUACCUUACUUGGAGCUGGAGGUGAAGAGGAAGAGAAGAAAGAUGAGAAGAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 358 434 464
Modification Positions m6A m6A m6A
Genomic Coordinates 12:89655916:- 12:89655840:- 12:89655810:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
bXBqJigD9oV3
4HMi5ykupT9V
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
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jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
WiQcrNTGZHPT
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
bXBqJigD9oV3