Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000546709
Gene ID: ENSG00000166896
Gene Name: ATP23
Sequence (UNICHARACTER ENCODING) CAUUUCAGCCUCCCAAAGUGCUGGGAUUACAAGUGAGAGCCACUGCUCCCCACCUACUUAAGGGUCUUAAGGACACUUCAGACUUGAAAUGUUUUUGUGCCAGAAUAAUAUCCAUAAUCAGGCCCAUAUGAACAGAGUGGUCACACACGAGCUUAUUCAUGCAUUUGAUCAUUGUCGUGCCCAUGUCGACUGGUUCACCAACAUCAGACAUUUGGCGUGCUCAGAGGUUCGAGCUGCUAACCUUAGUGGAGACUGCUCACUUGUCAAUGAAAUAUUCAGGUUACAUUUUGGAUUAAAACAACACCACCAGACUUGUGUGCGAGACAGAGCCACUCUUUCUAUCCUGGCUGUUAGGAAUAUCAGCAAAGAAGUAGCUAAAAAGGCUGUUGAUGAAGUUUUUGAAUCUUGUUUCAAUGACCAUGAACCUUUUGGAAGGAUCCCACAUAACAAGACUUAUGCAAGAUAUGCUCACAGAGЖCUUUGAAAACCGUGAUCGGUAUUAUUCAAAUAUAUGAGCACAAUGЖCAUUUUUAUAUUACAGAGCUUCCAUCAUCAUGAAGAAAAAA
Sequence (SHORT NAMES ENCODING) CAUUUCAGCCUCCCAAAGUGCUGGGAUUACAAGUGAGAGCCACUGCUCCCCACCUACUUAAGGGUCUUAAGGACACUUCAGACUUGAAAUGUUUUUGUGCCAGAAUAAUAUCCAUAAUCAGGCCCAUAUGAACAGAGUGGUCACACACGAGCUUAUUCAUGCAUUUGAUCAUUGUCGUGCCCAUGUCGACUGGUUCACCAACAUCAGACAUUUGGCGUGCUCAGAGGUUCGAGCUGCUAACCUUAGUGGAGACUGCUCACUUGUCAAUGAAAUAUUCAGGUUACAUUUUGGAUUAAAACAACACCACCAGACUUGUGUGCGAGACAGAGCCACUCUUUCUAUCCUGGCUGUUAGGAAUAUCAGCAAAGAAGUAGCUAAAAAGGCUGUUGAUGAAGUUUUUGAAUCUUGUUUCAAUGACCAUGAACCUUUUGGAAGGAUCCCACAUAACAAGACUUAUGCAAGAUAUGCUCACAGAGm6ACUUUGAAAACCGUGAUCGGUAUUAUUCAAAUAUAUGAGCACAAUGm6ACAUUUUUAUAUUACAGAGCUUCCAUCAUCAUGAAGAAAAAA
Sequence (MODOMICS CODE ENCODING) CAUUUCAGCCUCCCAAAGUGCUGGGAUUACAAGUGAGAGCCACUGCUCCCCACCUACUUAAGGGUCUUAAGGACACUUCAGACUUGAAAUGUUUUUGUGCCAGAAUAAUAUCCAUAAUCAGGCCCAUAUGAACAGAGUGGUCACACACGAGCUUAUUCAUGCAUUUGAUCAUUGUCGUGCCCAUGUCGACUGGUUCACCAACAUCAGACAUUUGGCGUGCUCAGAGGUUCGAGCUGCUAACCUUAGUGGAGACUGCUCACUUGUCAAUGAAAUAUUCAGGUUACAUUUUGGAUUAAAACAACACCACCAGACUUGUGUGCGAGACAGAGCCACUCUUUCUAUCCUGGCUGUUAGGAAUAUCAGCAAAGAAGUAGCUAAAAAGGCUGUUGAUGAAGUUUUUGAAUCUUGUUUCAAUGACCAUGAACCUUUUGGAAGGAUCCCACAUAACAAGACUUAUGCAAGAUAUGCUCACAGAG2000000006ACUUUGAAAACCGUGAUCGGUAUUAUUCAAAUAUAUGAGCACAAUG2000000006ACAUUUUUAUAUUACAGAGCUUCCAUCAUCAUGAAGAAAAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 477 523
Modification Positions m6A m6A
Genomic Coordinates 12:57956853:+ 12:57956899:+
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
aivdrAsbdKEU
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
iezFbUdmY3A6
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6