General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000424518
Gene ID:	ENSG00000228630
Gene Name:	HOTAIR
Sequence (UNICHARACTER ENCODING)	CCAGUUCUCAGGCGAGAGCCGCGGCUGACAGGGUCUGGGACAGAAGGAAAGCCCUCCAGCCUCCAGGCCCUGCCUUCUGCCUGCACAUUCUGCCCUGAUUUCCGGAACCUGGAAGCCUAGGCAGGCAGUGGGGAACUCUGACUCGCCUGUGCUCUGGAGCUUGAUCCGAAAGCUUCCACAGUGAGGACUGCUCCGUGGGGGUAAGAGAGCACCAGGCACUGAGGCCUGGGAGUUCCACAGACCAACACCCCUGCUCCUGGCGGCUCCCACCCGGGACUUAGACCCUCAGGUCCCUAAUAUCCCGGAGGUGCUCUCAAUCAGAAAGGUCCUGCUCCGCUUCGCAGUGGAAUGGAACGGAUUUAGAAGCCUGCAGUAGGGGAGUGGGGAGUGGAGAGAGGGAGCCCAGAGUUACAGACGGCGGCGAGAGGAAGGAGGGGCGUCUUUAUUUUUUUAAGGCCCCAAAGAGUCUGAUGUUUACAAGACCAGAAAUGCCACGGCCGCGUCCUGGCAGAGAAAAGGCUGAAAUGGAGGACCGGCGCCUUCCUUAUAAGUAUGCACAUUGGCGAGAGAAGUGCUGCAACCUAAACCAGCAAUUACACCCAAGCUCGUUGGGGCCUAAGCCAGUACCGACCUGGUAGAAAAAGCAACCACGAAGCUAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGUGAAAGCGAACCACGCAGAGAAAUGCAGGCAAGGGAGCAAGGCGGCAGUUCCCGGAACAAACGUGGCAGAGGGCAAGACGGGCACUCACAGЖCAGAGGUUUAUGUAUUUUUAUUUUUUAAAAUCUGAUUUGGUGUUCCAUGAGGAAAAGGGAAAAUCUAGGGAACGGGAGUACAGAGAGAAUAAUCCGGGUCCUAGCUCGCCACAUGAACGCCCAGAGAACGCUGGAAAAACCUGAGCGGGUGCCGGGGCAGCACCCGGCUCGGGUCAGCCACUGCCCCACACCGGGCCCACCAAGCCCCGCCCCUCGCGGCCACCGGGGCUUCCUUGCUCUUCUUAUCAUCUCCAUCUUUAUGAUGAGGCUUGUUAACAAGACCAGAGAGCUGGCCAAGCACCUCUAUCUCAGCCGCGCCCGCUCAGCCGAGCAGCGGUCGGUGGGGGGACUGGGAGGCGCUAAUUAAUUGAUUCCUUUGGЖCUGUAAAAUAUGGCGGCGUCUACACGGAACCCAUGGЖCUCAUAAACAAUAUAUCUGUUGGGCGUGAGUGCACUGUCUCUCAAAUAAUUUUUCCAUAGGCAAAUGUCAGAGGGUUCUGGAUUUUUAGUUGCUAAGGAAAGAUCCAAAUGGGACCAAUUUUAGGAGGCCCAAACAGAGUCCGUUCAGUGUCAGAAAAUGCUUCCCCAAAGGGGUUGGGAGUGUGUUUUGUUGGAAAAAAGCUUGGGUUAUAGGAAAGCCUUUCCCUGCUACUUGUGUAGACCCAGCCCAAUUUAAGAAUUACAAGGAAGCGAAGGGGUUGUGUAGGCCGGAAGCCUCUCUGUCCCGGCUGGAUGCAGGGGACUUGAGCUGCUCCGGAAUUUGAGAGGAACAUAGAAGCAAAGGUCCAGCCUUUGCUUCGUGCUGAUUCCUAGACUUAAGAUUCAAAAACAAAUUUUUAAAAGUGAAACCAGCCCUAGCCUUUGGAAGCUCUUGAAGGUUCAGCACCCACCCAGGAAUCCACCUGCCUGUUACACGCCUCUCCAAGACACAGUGGCACCGCUUUUCUAACUGGCAGCACAGAGCAACUCUAUAAUAUGCUUAUAUUAGGUCUAGAAGAAUGCAUCUUGAGACACAUGGGUAACCUAAUUAUAUAAUGCUUGUUCCAUACAGGAGUGAUUAUGCAGUGGGACCCUGCUGCAAACGGGЖCUUUGCACUCUAAAUAUAGACCCCAGCUUGGGACAAAAGUUGCAGUAGAAAAAUAGACAUAGGAGAACACUUAAAUAAGUGAUGCAUGUAGACACAGAAGGGGUAUUUAAAAGACAGAAAUAAUAGAAGUACAGAAGAACAGAAAAAAAAUCAGCAGAUGGAGAUUACCAUUCCCAAUGCCUGAACUUCCUCCUGCUAUUAAGAUUGCUAGAGAAUUGUGUCUUAAACAGUUCAUGAACCCAGAAGAAUGCAAUUUCAAUGUAUUUAGUACACACACAGUAUGUAUAUAAACACAACUCACAGAAUAUAUUUUCCAUACAUUGGGUAGGUAUGCACUUUGUGUAUAUAUAAUAAUGUAUUUUCCAUGCAGUUUUAAAAUGUAGAUAUAUUAAUAUCUGGAUGCAUUUUCUGUGCACUGGUUUUAUAUGCCUUAUGGAGUAUAUACUCACAUGUAGCUAAAUAGACUCAGGACUGCACAUUCCUUGUGUAGGUUGUGUGUGUGUGGUGGUUUUAUGCAUAAAUAAAGUUUUACAUGUGGUGAAUAUA
Sequence (SHORT NAMES ENCODING)	CCAGUUCUCAGGCGAGAGCCGCGGCUGACAGGGUCUGGGACAGAAGGAAAGCCCUCCAGCCUCCAGGCCCUGCCUUCUGCCUGCACAUUCUGCCCUGAUUUCCGGAACCUGGAAGCCUAGGCAGGCAGUGGGGAACUCUGACUCGCCUGUGCUCUGGAGCUUGAUCCGAAAGCUUCCACAGUGAGGACUGCUCCGUGGGGGUAAGAGAGCACCAGGCACUGAGGCCUGGGAGUUCCACAGACCAACACCCCUGCUCCUGGCGGCUCCCACCCGGGACUUAGACCCUCAGGUCCCUAAUAUCCCGGAGGUGCUCUCAAUCAGAAAGGUCCUGCUCCGCUUCGCAGUGGAAUGGAACGGAUUUAGAAGCCUGCAGUAGGGGAGUGGGGAGUGGAGAGAGGGAGCCCAGAGUUACAGACGGCGGCGAGAGGAAGGAGGGGCGUCUUUAUUUUUUUAAGGCCCCAAAGAGUCUGAUGUUUACAAGACCAGAAAUGCCACGGCCGCGUCCUGGCAGAGAAAAGGCUGAAAUGGAGGACCGGCGCCUUCCUUAUAAGUAUGCACAUUGGCGAGAGAAGUGCUGCAACCUAAACCAGCAAUUACACCCAAGCUCGUUGGGGCCUAAGCCAGUACCGACCUGGUAGAAAAAGCAACCACGAAGCUAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGUGAAAGCGAACCACGCAGAGAAAUGCAGGCAAGGGAGCAAGGCGGCAGUUCCCGGAACAAACGUGGCAGAGGGCAAGACGGGCACUCACAGm6ACAGAGGUUUAUGUAUUUUUAUUUUUUAAAAUCUGAUUUGGUGUUCCAUGAGGAAAAGGGAAAAUCUAGGGAACGGGAGUACAGAGAGAAUAAUCCGGGUCCUAGCUCGCCACAUGAACGCCCAGAGAACGCUGGAAAAACCUGAGCGGGUGCCGGGGCAGCACCCGGCUCGGGUCAGCCACUGCCCCACACCGGGCCCACCAAGCCCCGCCCCUCGCGGCCACCGGGGCUUCCUUGCUCUUCUUAUCAUCUCCAUCUUUAUGAUGAGGCUUGUUAACAAGACCAGAGAGCUGGCCAAGCACCUCUAUCUCAGCCGCGCCCGCUCAGCCGAGCAGCGGUCGGUGGGGGGACUGGGAGGCGCUAAUUAAUUGAUUCCUUUGGm6ACUGUAAAAUAUGGCGGCGUCUACACGGAACCCAUGGm6ACUCAUAAACAAUAUAUCUGUUGGGCGUGAGUGCACUGUCUCUCAAAUAAUUUUUCCAUAGGCAAAUGUCAGAGGGUUCUGGAUUUUUAGUUGCUAAGGAAAGAUCCAAAUGGGACCAAUUUUAGGAGGCCCAAACAGAGUCCGUUCAGUGUCAGAAAAUGCUUCCCCAAAGGGGUUGGGAGUGUGUUUUGUUGGAAAAAAGCUUGGGUUAUAGGAAAGCCUUUCCCUGCUACUUGUGUAGACCCAGCCCAAUUUAAGAAUUACAAGGAAGCGAAGGGGUUGUGUAGGCCGGAAGCCUCUCUGUCCCGGCUGGAUGCAGGGGACUUGAGCUGCUCCGGAAUUUGAGAGGAACAUAGAAGCAAAGGUCCAGCCUUUGCUUCGUGCUGAUUCCUAGACUUAAGAUUCAAAAACAAAUUUUUAAAAGUGAAACCAGCCCUAGCCUUUGGAAGCUCUUGAAGGUUCAGCACCCACCCAGGAAUCCACCUGCCUGUUACACGCCUCUCCAAGACACAGUGGCACCGCUUUUCUAACUGGCAGCACAGAGCAACUCUAUAAUAUGCUUAUAUUAGGUCUAGAAGAAUGCAUCUUGAGACACAUGGGUAACCUAAUUAUAUAAUGCUUGUUCCAUACAGGAGUGAUUAUGCAGUGGGACCCUGCUGCAAACGGGm6ACUUUGCACUCUAAAUAUAGACCCCAGCUUGGGACAAAAGUUGCAGUAGAAAAAUAGACAUAGGAGAACACUUAAAUAAGUGAUGCAUGUAGACACAGAAGGGGUAUUUAAAAGACAGAAAUAAUAGAAGUACAGAAGAACAGAAAAAAAAUCAGCAGAUGGAGAUUACCAUUCCCAAUGCCUGAACUUCCUCCUGCUAUUAAGAUUGCUAGAGAAUUGUGUCUUAAACAGUUCAUGAACCCAGAAGAAUGCAAUUUCAAUGUAUUUAGUACACACACAGUAUGUAUAUAAACACAACUCACAGAAUAUAUUUUCCAUACAUUGGGUAGGUAUGCACUUUGUGUAUAUAUAAUAAUGUAUUUUCCAUGCAGUUUUAAAAUGUAGAUAUAUUAAUAUCUGGAUGCAUUUUCUGUGCACUGGUUUUAUAUGCCUUAUGGAGUAUAUACUCACAUGUAGCUAAAUAGACUCAGGACUGCACAUUCCUUGUGUAGGUUGUGUGUGUGUGGUGGUUUUAUGCAUAAAUAAAGUUUUACAUGUGGUGAAUAUA
Sequence (MODOMICS CODE ENCODING)	CCAGUUCUCAGGCGAGAGCCGCGGCUGACAGGGUCUGGGACAGAAGGAAAGCCCUCCAGCCUCCAGGCCCUGCCUUCUGCCUGCACAUUCUGCCCUGAUUUCCGGAACCUGGAAGCCUAGGCAGGCAGUGGGGAACUCUGACUCGCCUGUGCUCUGGAGCUUGAUCCGAAAGCUUCCACAGUGAGGACUGCUCCGUGGGGGUAAGAGAGCACCAGGCACUGAGGCCUGGGAGUUCCACAGACCAACACCCCUGCUCCUGGCGGCUCCCACCCGGGACUUAGACCCUCAGGUCCCUAAUAUCCCGGAGGUGCUCUCAAUCAGAAAGGUCCUGCUCCGCUUCGCAGUGGAAUGGAACGGAUUUAGAAGCCUGCAGUAGGGGAGUGGGGAGUGGAGAGAGGGAGCCCAGAGUUACAGACGGCGGCGAGAGGAAGGAGGGGCGUCUUUAUUUUUUUAAGGCCCCAAAGAGUCUGAUGUUUACAAGACCAGAAAUGCCACGGCCGCGUCCUGGCAGAGAAAAGGCUGAAAUGGAGGACCGGCGCCUUCCUUAUAAGUAUGCACAUUGGCGAGAGAAGUGCUGCAACCUAAACCAGCAAUUACACCCAAGCUCGUUGGGGCCUAAGCCAGUACCGACCUGGUAGAAAAAGCAACCACGAAGCUAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGUGAAAGCGAACCACGCAGAGAAAUGCAGGCAAGGGAGCAAGGCGGCAGUUCCCGGAACAAACGUGGCAGAGGGCAAGACGGGCACUCACAG2000000006ACAGAGGUUUAUGUAUUUUUAUUUUUUAAAAUCUGAUUUGGUGUUCCAUGAGGAAAAGGGAAAAUCUAGGGAACGGGAGUACAGAGAGAAUAAUCCGGGUCCUAGCUCGCCACAUGAACGCCCAGAGAACGCUGGAAAAACCUGAGCGGGUGCCGGGGCAGCACCCGGCUCGGGUCAGCCACUGCCCCACACCGGGCCCACCAAGCCCCGCCCCUCGCGGCCACCGGGGCUUCCUUGCUCUUCUUAUCAUCUCCAUCUUUAUGAUGAGGCUUGUUAACAAGACCAGAGAGCUGGCCAAGCACCUCUAUCUCAGCCGCGCCCGCUCAGCCGAGCAGCGGUCGGUGGGGGGACUGGGAGGCGCUAAUUAAUUGAUUCCUUUGG2000000006ACUGUAAAAUAUGGCGGCGUCUACACGGAACCCAUGG2000000006ACUCAUAAACAAUAUAUCUGUUGGGCGUGAGUGCACUGUCUCUCAAAUAAUUUUUCCAUAGGCAAAUGUCAGAGGGUUCUGGAUUUUUAGUUGCUAAGGAAAGAUCCAAAUGGGACCAAUUUUAGGAGGCCCAAACAGAGUCCGUUCAGUGUCAGAAAAUGCUUCCCCAAAGGGGUUGGGAGUGUGUUUUGUUGGAAAAAAGCUUGGGUUAUAGGAAAGCCUUUCCCUGCUACUUGUGUAGACCCAGCCCAAUUUAAGAAUUACAAGGAAGCGAAGGGGUUGUGUAGGCCGGAAGCCUCUCUGUCCCGGCUGGAUGCAGGGGACUUGAGCUGCUCCGGAAUUUGAGAGGAACAUAGAAGCAAAGGUCCAGCCUUUGCUUCGUGCUGAUUCCUAGACUUAAGAUUCAAAAACAAAUUUUUAAAAGUGAAACCAGCCCUAGCCUUUGGAAGCUCUUGAAGGUUCAGCACCCACCCAGGAAUCCACCUGCCUGUUACACGCCUCUCCAAGACACAGUGGCACCGCUUUUCUAACUGGCAGCACAGAGCAACUCUAUAAUAUGCUUAUAUUAGGUCUAGAAGAAUGCAUCUUGAGACACAUGGGUAACCUAAUUAUAUAAUGCUUGUUCCAUACAGGAGUGAUUAUGCAGUGGGACCCUGCUGCAAACGGG2000000006ACUUUGCACUCUAAAUAUAGACCCCAGCUUGGGACAAAAGUUGCAGUAGAAAAAUAGACAUAGGAGAACACUUAAAUAAGUGAUGCAUGUAGACACAGAAGGGGUAUUUAAAAGACAGAAAUAAUAGAAGUACAGAAGAACAGAAAAAAAAUCAGCAGAUGGAGAUUACCAUUCCCAAUGCCUGAACUUCCUCCUGCUAUUAAGAUUGCUAGAGAAUUGUGUCUUAAACAGUUCAUGAACCCAGAAGAAUGCAAUUUCAAUGUAUUUAGUACACACACAGUAUGUAUAUAAACACAACUCACAGAAUAUAUUUUCCAUACAUUGGGUAGGUAUGCACUUUGUGUAUAUAUAAUAAUGUAUUUUCCAUGCAGUUUUAAAAUGUAGAUAUAUUAAUAUCUGGAUGCAUUUUCUGUGCACUGGUUUUAUAUGCCUUAUGGAGUAUAUACUCACAUGUAGCUAAAUAGACUCAGGACUGCACAUUCCUUGUGUAGGUUGUGUGUGUGUGGUGGUUUUAUGCAUAAAUAAAGUUUUACAUGUGGUGAAUAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	790	1171	1208	1875
Modification Positions	m6A	m6A	m6A	m6A
Genomic Coordinates	12:53963939:-	12:53963558:-	12:53963521:-	12:53962854:-
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv jNkxUQNx8GRd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9